Wall clock time and date at job start Tue Mar 31 2020 17:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.58088 * 2 1 4 4 O 1.45708 * 110.52284 * 237.29247 * 2 1 3 5 5 C 1.33764 * 109.47606 * 241.37046 * 4 2 1 6 6 O 1.21520 * 123.06726 * 179.97438 * 5 4 2 7 7 N 1.33997 * 113.86091 * 359.97438 * 5 4 2 8 8 C 1.47093 * 108.88325 * 359.97438 * 7 5 4 9 9 H 1.08995 * 110.56822 * 241.28033 * 8 7 5 10 10 C 1.50698 * 110.56726 * 118.57071 * 8 7 5 11 11 O 1.21286 * 120.00105 * 341.45836 * 10 8 7 12 12 N 1.34778 * 120.00459 * 161.45798 * 10 8 7 13 13 C 1.46495 * 120.00230 * 180.02562 * 12 10 8 14 14 H 1.09001 * 109.47245 * 324.99417 * 13 12 10 15 15 C 1.53001 * 109.46942 * 204.99884 * 13 12 10 16 16 C 1.53004 * 109.47388 * 64.99689 * 15 13 12 17 17 C 1.50697 * 109.47162 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00136 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99806 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99864 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00002 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47300 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47156 * 120.00361 * 21 19 17 24 24 H 1.48497 * 109.47219 * 240.00205 * 21 19 17 25 25 C 1.50693 * 109.47377 * 84.99609 * 13 12 10 26 26 C 1.38233 * 120.00207 * 219.99447 * 25 13 12 27 27 C 1.38234 * 120.00037 * 179.72405 * 26 25 13 28 28 C 1.38235 * 120.00220 * 0.28719 * 27 26 25 29 29 C 1.38237 * 119.99712 * 359.94731 * 28 27 26 30 30 C 1.38234 * 120.00048 * 0.02876 * 29 28 27 31 31 H 1.08997 * 109.46873 * 297.29844 * 1 2 3 32 32 H 1.08999 * 109.46938 * 57.29557 * 1 2 3 33 33 H 1.08999 * 109.47253 * 177.29407 * 1 2 3 34 34 H 0.97001 * 125.56130 * 179.97438 * 7 5 4 35 35 H 0.96996 * 119.99199 * 0.02562 * 12 10 8 36 36 H 1.08996 * 109.47156 * 184.99707 * 15 13 12 37 37 H 1.09004 * 109.46953 * 304.99835 * 15 13 12 38 38 H 1.09003 * 109.46863 * 300.00541 * 16 15 13 39 39 H 1.08995 * 109.46803 * 60.00005 * 16 15 13 40 40 H 0.96998 * 119.99574 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.00157 * 0.02562 * 26 25 13 42 42 H 1.07999 * 120.00009 * 180.25939 * 27 26 25 43 43 H 1.07996 * 120.00471 * 179.97438 * 28 27 26 44 44 H 1.08001 * 119.99657 * 180.02562 * 29 28 27 45 45 H 1.08004 * 119.99527 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0204 0.0000 4 8 2.0408 -0.7374 -1.1482 5 6 2.7630 -1.7800 -0.7233 6 8 3.3049 -2.5630 -1.4783 7 7 2.8345 -1.8822 0.6108 8 6 2.0715 -0.7789 1.2143 9 1 2.7234 -0.1478 1.8182 10 6 0.9356 -1.3143 2.0475 11 8 0.5486 -2.4523 1.8855 12 7 0.3496 -0.5287 2.9726 13 6 -0.7542 -1.0494 3.7829 14 1 -1.3572 -1.7295 3.1812 15 6 -1.6247 0.1125 4.2657 16 6 -2.2882 0.7868 3.0632 17 6 -3.1461 1.9308 3.5389 18 1 -3.2112 2.1549 4.5933 19 6 -3.8470 2.6921 2.6277 20 7 -3.7673 2.4195 1.3436 21 14 -4.9098 4.1106 3.2172 22 1 -4.8291 4.2081 4.6969 23 1 -4.4259 5.3770 2.6110 24 1 -6.3190 3.8749 2.8124 25 6 -0.1988 -1.7891 4.9725 26 6 -0.7891 -2.9668 5.3914 27 6 -0.2760 -3.6483 6.4791 28 6 0.8237 -3.1491 7.1516 29 6 1.4110 -1.9689 6.7357 30 6 0.8983 -1.2876 5.6476 31 1 -0.3633 0.4713 0.9132 32 1 -0.3633 0.5553 -0.8647 33 1 -0.3634 -1.0265 -0.0485 34 1 3.3115 -2.5713 1.0991 35 1 0.6589 0.3815 3.1019 36 1 -2.3931 -0.2651 4.9402 37 1 -1.0037 0.8375 4.7919 38 1 -1.5197 1.1643 2.3886 39 1 -2.9092 0.0618 2.5371 40 1 -4.2607 2.9549 0.7027 41 1 -1.6481 -3.3570 4.8658 42 1 -0.7347 -4.5706 6.8038 43 1 1.2243 -3.6813 8.0017 44 1 2.2705 -1.5791 7.2609 45 1 1.3570 -0.3653 5.3230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496706520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:58 Heat of formation + Delta-G solvation = -90.101320 kcal Electronic energy + Delta-G solvation = -29122.912902 eV Core-core repulsion = 25105.289471 eV Total energy + Delta-G solvation = -4017.623431 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01949 -40.00210 -38.77629 -37.25909 -35.97447 -34.71173 -33.37041 -32.47857 -31.30627 -30.79594 -30.46946 -27.41201 -26.33193 -23.94586 -23.23101 -22.54488 -22.40791 -21.27670 -20.59026 -20.17297 -18.33944 -17.75763 -17.07145 -16.73622 -16.37893 -16.27779 -15.75170 -15.41880 -15.07328 -14.76737 -14.57168 -14.50117 -14.20760 -13.81693 -13.52662 -13.37576 -13.29512 -13.08732 -12.71247 -12.70102 -12.22815 -11.97434 -11.87541 -11.60388 -11.26470 -11.07753 -11.06622 -10.90138 -10.78965 -10.75041 -10.62855 -10.37400 -10.04890 -9.72311 -9.35366 -9.27499 -8.99265 -8.85654 -8.56645 -8.47907 -6.13562 -4.16429 1.39702 1.45694 2.37632 2.46728 2.68487 3.01376 3.22161 3.31404 3.33952 3.48562 3.85995 3.88081 4.34962 4.40005 4.45136 4.76950 4.87971 4.92191 5.01283 5.02128 5.14481 5.16808 5.23061 5.45483 5.53203 5.64958 5.72239 5.79987 5.82866 5.98952 6.06680 6.15052 6.33479 6.40686 6.47542 6.53898 6.57417 6.59732 6.78472 6.81224 7.05084 7.12654 7.47752 7.49539 7.59825 7.84568 7.97288 8.15521 8.25777 8.90108 9.49011 10.96999 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007365 B = 0.004835 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3800.725639 B = 5789.998683 C = 9058.241679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.084 3.916 3 H 0.129 0.871 4 O -0.320 6.320 5 C 0.652 3.348 6 O -0.525 6.525 7 N -0.711 5.711 8 C 0.077 3.923 9 H 0.123 0.877 10 C 0.512 3.488 11 O -0.521 6.521 12 N -0.706 5.706 13 C 0.183 3.817 14 H 0.096 0.904 15 C -0.114 4.114 16 C 0.025 3.975 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.081 4.081 26 C -0.105 4.105 27 C -0.120 4.120 28 C -0.129 4.129 29 C -0.124 4.124 30 C -0.108 4.108 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.437 0.563 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.261 0.739 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.536 -5.042 7.316 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.028 3.972 3 H 0.146 0.854 4 O -0.230 6.230 5 C 0.405 3.595 6 O -0.410 6.410 7 N -0.383 5.383 8 C -0.034 4.034 9 H 0.141 0.859 10 C 0.295 3.705 11 O -0.396 6.396 12 N -0.358 5.358 13 C 0.079 3.921 14 H 0.114 0.886 15 C -0.152 4.152 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.073 0.927 19 C -0.141 4.141 20 N -0.530 5.530 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.138 4.138 28 C -0.147 4.147 29 C -0.142 4.142 30 C -0.127 4.127 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.281 0.719 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.317 -6.014 6.275 15.075 hybrid contribution -0.350 0.989 0.831 1.339 sum 11.967 -5.025 7.107 14.798 Atomic orbital electron populations 1.22423 0.90107 1.04768 1.06203 1.23917 0.97784 0.95826 0.79641 0.85373 1.87346 1.63566 1.39077 1.33033 1.18436 0.78030 0.80692 0.82385 1.91067 1.49658 1.42381 1.57910 1.45636 1.54843 1.31746 1.06056 1.22483 0.94177 0.90029 0.96699 0.85900 1.20264 0.83565 0.86361 0.80278 1.90758 1.63130 1.18198 1.67475 1.46034 1.35970 1.16358 1.37396 1.20173 0.86702 0.96761 0.88496 0.88639 1.22009 0.97597 0.94376 1.01209 1.19135 0.95282 0.95083 0.91738 1.21227 1.27694 1.14046 0.93284 0.92651 1.24979 0.96676 0.97556 0.94902 1.69947 1.42306 1.39882 1.00853 0.86589 0.80437 0.82356 0.78933 1.19779 1.21018 1.21018 1.20357 0.95731 0.95097 0.97032 1.21043 0.99935 0.94566 0.96855 1.21098 0.96788 0.99845 0.96108 1.21080 0.96831 0.96697 1.00085 1.21079 1.00072 0.95759 0.97273 1.20897 0.96472 0.99679 0.95629 0.87737 0.89734 0.90987 0.71946 0.76139 0.91315 0.92378 0.96221 0.96486 0.92959 0.85988 0.86325 0.86566 0.86480 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 8.47 37.16 0.31 -2.10 16 2 C 0.08 0.93 4.50 -26.16 -0.12 0.81 16 3 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 4 O -0.32 -4.62 10.80 -37.81 -0.41 -5.03 16 5 C 0.65 9.92 9.16 53.71 0.49 10.41 16 6 O -0.53 -9.82 18.04 -19.13 -0.35 -10.16 16 7 N -0.71 -8.31 5.66 -59.36 -0.34 -8.65 16 8 C 0.08 0.76 4.18 -68.19 -0.28 0.48 16 9 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 10 C 0.51 6.59 4.97 -10.99 -0.05 6.54 16 11 O -0.52 -8.83 16.03 5.55 0.09 -8.74 16 12 N -0.71 -8.48 2.81 -54.94 -0.15 -8.63 16 13 C 0.18 2.63 2.17 -69.09 -0.15 2.48 16 14 H 0.10 1.59 7.44 -51.93 -0.39 1.21 16 15 C -0.11 -1.90 4.67 -26.73 -0.12 -2.03 16 16 C 0.02 0.53 4.86 -27.88 -0.14 0.39 16 17 C -0.52 -13.18 9.11 -34.44 -0.31 -13.50 16 18 H 0.06 1.38 7.74 -52.49 -0.41 0.97 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 21 Si 0.89 20.15 29.54 -169.99 -5.02 15.13 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.08 -1.09 4.91 -104.63 -0.51 -1.60 16 26 C -0.11 -1.40 9.67 -39.58 -0.38 -1.78 16 27 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 28 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 29 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 30 C -0.11 -1.28 9.32 -39.58 -0.37 -1.65 16 31 H 0.10 1.49 5.31 -51.93 -0.28 1.22 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.14 7.39 -51.93 -0.38 0.75 16 34 H 0.44 4.43 8.96 -40.82 -0.37 4.07 16 35 H 0.40 3.92 8.60 -40.82 -0.35 3.56 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.42 6.24 -51.93 -0.32 0.10 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.12 1.56 8.04 -52.49 -0.42 1.13 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.18 7.73 -52.48 -0.41 0.78 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -33.28 377.85 -8.94 -42.22 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.26 Total: 7.15 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.93 Total: -5.37 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.25 Total: -40.88 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.66 Total: -23.94 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.28 -8.94 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496706520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.885 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds