Wall clock time and date at job start Tue Mar 31 2020 17:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.58088 * 2 1 4 4 O 1.45708 * 110.52284 * 237.29247 * 2 1 3 5 5 C 1.33764 * 109.47606 * 241.37046 * 4 2 1 6 6 O 1.21520 * 123.06726 * 179.97438 * 5 4 2 7 7 N 1.33997 * 113.86091 * 359.97438 * 5 4 2 8 8 C 1.47093 * 108.88325 * 359.97438 * 7 5 4 9 9 H 1.08995 * 110.56822 * 241.28033 * 8 7 5 10 10 C 1.50698 * 110.56726 * 118.57071 * 8 7 5 11 11 O 1.21286 * 120.00105 * 341.45836 * 10 8 7 12 12 N 1.34778 * 120.00459 * 161.45798 * 10 8 7 13 13 C 1.46495 * 120.00230 * 180.02562 * 12 10 8 14 14 H 1.09001 * 109.47245 * 324.99417 * 13 12 10 15 15 C 1.53001 * 109.46942 * 204.99884 * 13 12 10 16 16 C 1.53004 * 109.47388 * 64.99689 * 15 13 12 17 17 C 1.50697 * 109.47162 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00136 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99806 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99864 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00002 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47300 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47156 * 120.00361 * 21 19 17 24 24 H 1.48497 * 109.47219 * 240.00205 * 21 19 17 25 25 C 1.50693 * 109.47377 * 84.99609 * 13 12 10 26 26 C 1.38233 * 120.00207 * 219.99447 * 25 13 12 27 27 C 1.38234 * 120.00037 * 179.72405 * 26 25 13 28 28 C 1.38235 * 120.00220 * 0.28719 * 27 26 25 29 29 C 1.38237 * 119.99712 * 359.94731 * 28 27 26 30 30 C 1.38234 * 120.00048 * 0.02876 * 29 28 27 31 31 H 1.08997 * 109.46873 * 297.29844 * 1 2 3 32 32 H 1.08999 * 109.46938 * 57.29557 * 1 2 3 33 33 H 1.08999 * 109.47253 * 177.29407 * 1 2 3 34 34 H 0.97001 * 125.56130 * 179.97438 * 7 5 4 35 35 H 0.96996 * 119.99199 * 0.02562 * 12 10 8 36 36 H 1.08996 * 109.47156 * 184.99707 * 15 13 12 37 37 H 1.09004 * 109.46953 * 304.99835 * 15 13 12 38 38 H 1.09003 * 109.46863 * 300.00541 * 16 15 13 39 39 H 1.08995 * 109.46803 * 60.00005 * 16 15 13 40 40 H 0.96998 * 119.99574 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.00157 * 0.02562 * 26 25 13 42 42 H 1.07999 * 120.00009 * 180.25939 * 27 26 25 43 43 H 1.07996 * 120.00471 * 179.97438 * 28 27 26 44 44 H 1.08001 * 119.99657 * 180.02562 * 29 28 27 45 45 H 1.08004 * 119.99527 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9131 1.0204 0.0000 4 8 2.0408 -0.7374 -1.1482 5 6 2.7630 -1.7800 -0.7233 6 8 3.3049 -2.5630 -1.4783 7 7 2.8345 -1.8822 0.6108 8 6 2.0715 -0.7789 1.2143 9 1 2.7234 -0.1478 1.8182 10 6 0.9356 -1.3143 2.0475 11 8 0.5486 -2.4523 1.8855 12 7 0.3496 -0.5287 2.9726 13 6 -0.7542 -1.0494 3.7829 14 1 -1.3572 -1.7295 3.1812 15 6 -1.6247 0.1125 4.2657 16 6 -2.2882 0.7868 3.0632 17 6 -3.1461 1.9308 3.5389 18 1 -3.2112 2.1549 4.5933 19 6 -3.8470 2.6921 2.6277 20 7 -3.7673 2.4195 1.3436 21 14 -4.9098 4.1106 3.2172 22 1 -4.8291 4.2081 4.6969 23 1 -4.4259 5.3770 2.6110 24 1 -6.3190 3.8749 2.8124 25 6 -0.1988 -1.7891 4.9725 26 6 -0.7891 -2.9668 5.3914 27 6 -0.2760 -3.6483 6.4791 28 6 0.8237 -3.1491 7.1516 29 6 1.4110 -1.9689 6.7357 30 6 0.8983 -1.2876 5.6476 31 1 -0.3633 0.4713 0.9132 32 1 -0.3633 0.5553 -0.8647 33 1 -0.3634 -1.0265 -0.0485 34 1 3.3115 -2.5713 1.0991 35 1 0.6589 0.3815 3.1019 36 1 -2.3931 -0.2651 4.9402 37 1 -1.0037 0.8375 4.7919 38 1 -1.5197 1.1643 2.3886 39 1 -2.9092 0.0618 2.5371 40 1 -4.2607 2.9549 0.7027 41 1 -1.6481 -3.3570 4.8658 42 1 -0.7347 -4.5706 6.8038 43 1 1.2243 -3.6813 8.0017 44 1 2.2705 -1.5791 7.2609 45 1 1.3570 -0.3653 5.3230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496706520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:57 Heat of formation + Delta-G solvation = -112.650953 kcal Electronic energy + Delta-G solvation = -29123.890727 eV Core-core repulsion = 25105.289471 eV Total energy + Delta-G solvation = -4018.601256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.07717 -41.07683 -39.77188 -38.47194 -37.20284 -35.76762 -35.11875 -33.65735 -32.54710 -31.80269 -31.63800 -28.62958 -27.66434 -25.42188 -24.29645 -23.52544 -23.42480 -22.56372 -21.82844 -21.28871 -19.34817 -18.87550 -18.47384 -17.96418 -17.57618 -17.40959 -16.92442 -16.55866 -16.31542 -16.08998 -15.82567 -15.53506 -15.22908 -14.93785 -14.70592 -14.57392 -14.42884 -14.19360 -14.03836 -13.80985 -13.65724 -13.33561 -13.17875 -12.87000 -12.65865 -12.50109 -12.41279 -12.12304 -12.05388 -11.96392 -11.86268 -11.70770 -11.43493 -11.35880 -11.13072 -10.48687 -10.38298 -10.12741 -9.75000 -9.54612 -8.13423 -6.21909 0.48051 0.56739 1.32132 1.39949 1.42400 1.46326 1.55814 1.62197 1.98751 2.45404 2.51504 2.94535 2.96276 3.21319 3.39203 3.68817 3.79940 3.86104 4.01231 4.15199 4.19887 4.21566 4.28618 4.33790 4.40370 4.63456 4.69347 4.71728 4.72071 4.81388 5.03427 5.11993 5.16371 5.20518 5.27095 5.37427 5.60372 5.62989 5.63385 5.66878 5.74698 5.86249 5.93299 6.05649 6.17685 6.31711 6.48683 6.88424 6.94844 7.16153 7.47038 8.96811 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007365 B = 0.004835 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3800.725639 B = 5789.998683 C = 9058.241679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.178 0.822 4 O -0.335 6.335 5 C 0.649 3.351 6 O -0.570 6.570 7 N -0.696 5.696 8 C 0.086 3.914 9 H 0.185 0.815 10 C 0.512 3.488 11 O -0.567 6.567 12 N -0.695 5.695 13 C 0.197 3.803 14 H 0.061 0.939 15 C -0.097 4.097 16 C 0.031 3.969 17 C -0.536 4.536 18 H 0.057 0.943 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.949 3.051 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.289 1.289 25 C -0.098 4.098 26 C -0.131 4.131 27 C -0.128 4.128 28 C -0.129 4.129 29 C -0.124 4.124 30 C -0.112 4.112 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.445 0.555 35 H 0.418 0.582 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.022 0.978 39 H -0.022 1.022 40 H 0.260 0.740 41 H 0.110 0.890 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.720 -3.360 9.828 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.031 3.969 3 H 0.195 0.805 4 O -0.245 6.245 5 C 0.402 3.598 6 O -0.458 6.458 7 N -0.368 5.368 8 C -0.024 4.024 9 H 0.202 0.798 10 C 0.296 3.704 11 O -0.445 6.445 12 N -0.347 5.347 13 C 0.092 3.908 14 H 0.079 0.921 15 C -0.135 4.135 16 C -0.006 4.006 17 C -0.575 4.575 18 H 0.076 0.924 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.776 3.224 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.215 1.215 25 C -0.099 4.099 26 C -0.150 4.150 27 C -0.146 4.146 28 C -0.147 4.147 29 C -0.142 4.142 30 C -0.130 4.130 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.290 0.710 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.040 0.960 39 H -0.004 1.004 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 14.504 -4.292 8.841 17.520 hybrid contribution -1.117 0.430 0.108 1.202 sum 13.387 -3.862 8.949 16.559 Atomic orbital electron populations 1.22315 0.92682 1.02452 1.05621 1.24245 0.95720 0.97935 0.79019 0.80463 1.87323 1.63388 1.39134 1.34677 1.18570 0.77774 0.80434 0.83064 1.91025 1.51598 1.43947 1.59223 1.45585 1.54032 1.32252 1.04952 1.22766 0.93678 0.89678 0.96231 0.79780 1.20787 0.83838 0.85716 0.80013 1.90751 1.64614 1.20451 1.68724 1.45873 1.34984 1.16983 1.36831 1.19708 0.86913 0.95268 0.88928 0.92092 1.21739 0.97689 0.95193 0.98861 1.19004 0.94674 0.93574 0.93336 1.21675 1.27803 1.14590 0.93390 0.92427 1.25740 0.98045 1.00040 0.95038 1.70063 1.43429 1.41067 1.01882 0.85636 0.78371 0.79584 0.78852 1.18822 1.20429 1.21506 1.20234 0.97082 0.95537 0.97043 1.21164 1.00354 0.95436 0.98022 1.21347 0.97298 1.00384 0.95599 1.21472 0.96041 0.96796 1.00396 1.21466 1.00562 0.95404 0.96724 1.21149 0.95682 1.00465 0.95725 0.88384 0.90195 0.94194 0.71006 0.74342 0.92402 0.90420 0.95970 1.00404 0.93072 0.87210 0.84746 0.83875 0.83534 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.75 8.47 71.98 0.61 -4.14 16 2 C 0.09 1.70 4.50 30.96 0.14 1.84 16 3 H 0.18 1.87 8.14 -2.39 -0.02 1.85 16 4 O -0.34 -9.40 10.80 -47.25 -0.51 -9.91 16 5 C 0.65 19.42 9.16 129.91 1.19 20.61 16 6 O -0.57 -21.62 18.04 19.62 0.35 -21.27 16 7 N -0.70 -15.12 5.66 -573.43 -3.24 -18.36 16 8 C 0.09 1.47 4.18 44.50 0.19 1.65 16 9 H 0.19 1.06 8.14 -2.39 -0.02 1.04 16 10 C 0.51 12.68 4.97 87.66 0.44 13.12 16 11 O -0.57 -19.74 16.03 -3.05 -0.05 -19.79 16 12 N -0.69 -15.83 2.81 -446.11 -1.25 -17.08 16 13 C 0.20 5.75 2.17 44.24 0.10 5.84 16 14 H 0.06 2.20 7.44 -2.39 -0.02 2.19 16 15 C -0.10 -3.23 4.67 30.60 0.14 -3.09 16 16 C 0.03 1.37 4.86 29.85 0.15 1.52 16 17 C -0.54 -27.01 9.11 25.60 0.23 -26.78 16 18 H 0.06 2.82 7.74 -2.91 -0.02 2.80 16 19 C 0.01 0.52 5.46 84.65 0.46 0.98 16 20 N -0.92 -51.30 13.29 21.45 0.28 -51.02 16 21 Si 0.95 41.13 29.54 68.60 2.03 43.16 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 25 C -0.10 -2.56 4.91 -19.87 -0.10 -2.66 16 26 C -0.13 -3.53 9.67 22.27 0.22 -3.31 16 27 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 28 C -0.13 -2.41 10.05 22.27 0.22 -2.18 16 29 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 30 C -0.11 -2.34 9.32 22.27 0.21 -2.13 16 31 H 0.10 2.80 5.31 -2.39 -0.01 2.79 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.04 1.33 7.39 -2.39 -0.02 1.31 16 34 H 0.45 8.31 8.96 -92.71 -0.83 7.47 16 35 H 0.42 6.92 8.60 -92.71 -0.80 6.13 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.02 0.96 6.24 -2.39 -0.01 0.94 16 39 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 40 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.11 3.06 8.04 -2.91 -0.02 3.04 16 42 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.14 2.21 7.73 -2.91 -0.02 2.19 16 Total: -1.00 -76.43 377.85 1.65 -74.78 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.60 Total: 22.84 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 4.64 Total: -3.35 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -4.21 Total: -86.46 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.20 Total: -50.97 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -76.43 1.65 -74.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496706520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.874 kcal (2) G-P(sol) polarization free energy of solvation -76.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds