Wall clock time and date at job start Tue Mar 31 2020 17:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 N 1.46501 * 109.46683 * 119.99348 * 2 1 3 5 5 C 1.46507 * 119.99749 * 141.33309 * 4 2 1 6 6 C 1.50697 * 109.46985 * 269.99893 * 5 4 2 7 7 H 1.07995 * 120.00061 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00076 * 179.72470 * 6 5 4 9 9 N 1.31515 * 119.99692 * 0.27700 * 8 6 5 10 10 Si 1.86793 * 120.00276 * 180.27635 * 8 6 5 11 11 H 1.48501 * 109.47143 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47262 * 119.99921 * 10 8 6 13 13 H 1.48499 * 109.47247 * 239.99826 * 10 8 6 14 14 C 1.34771 * 120.00369 * 321.33186 * 4 2 1 15 15 O 1.21588 * 120.00156 * 141.65621 * 14 4 2 16 16 C 1.47548 * 120.00196 * 321.65817 * 14 4 2 17 17 C 1.39888 * 120.23250 * 30.84672 * 16 14 4 18 18 C 1.37764 * 120.09466 * 179.72035 * 17 16 14 19 19 C 1.38581 * 120.41701 * 0.56673 * 18 17 16 20 20 C 1.38392 * 120.15704 * 359.68837 * 19 18 17 21 21 C 1.39418 * 120.07132 * 0.04710 * 20 19 18 22 22 O 1.35690 * 119.55171 * 179.89788 * 21 20 19 23 23 C 1.43003 * 116.73649 * 327.20959 * 22 21 20 24 24 H 1.08999 * 109.44682 * 286.34631 * 23 22 21 25 25 C 1.53001 * 109.42022 * 166.42356 * 23 22 21 26 26 C 1.50758 * 109.62425 * 46.39326 * 23 22 21 27 27 O 1.21300 * 120.13968 * 148.67540 * 26 23 22 28 28 N 1.35090 * 119.72453 * 328.70149 * 26 23 22 29 29 H 1.08998 * 109.47594 * 289.40516 * 1 2 3 30 30 H 1.09004 * 109.46731 * 49.40262 * 1 2 3 31 31 H 1.08994 * 109.47394 * 169.39756 * 1 2 3 32 32 H 1.08990 * 109.47609 * 239.99373 * 2 1 3 33 33 H 1.09001 * 109.47064 * 217.11800 * 3 2 1 34 34 H 1.09007 * 109.47001 * 337.11376 * 3 2 1 35 35 H 1.08994 * 109.47394 * 97.11713 * 3 2 1 36 36 H 1.08999 * 109.47063 * 149.99679 * 5 4 2 37 37 H 1.08994 * 109.46951 * 30.00124 * 5 4 2 38 38 H 0.96996 * 119.99918 * 180.02562 * 9 8 6 39 39 H 1.08003 * 119.95191 * 359.97438 * 17 16 14 40 40 H 1.08005 * 119.79717 * 180.26829 * 18 17 16 41 41 H 1.08005 * 119.92317 * 179.70495 * 19 18 17 42 42 H 1.08998 * 109.47216 * 299.86316 * 25 23 22 43 43 H 1.09002 * 109.46558 * 59.86135 * 25 23 22 44 44 H 1.08994 * 109.47002 * 179.85935 * 25 23 22 45 45 H 0.97000 * 120.52696 * 181.69064 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 3.1963 -1.5573 1.1122 6 6 2.7633 -2.9631 0.7850 7 1 1.7154 -3.1883 0.6526 8 6 3.7054 -3.9606 0.6487 9 7 4.9815 -3.6862 0.8095 10 14 3.1693 -5.7016 0.2355 11 1 1.6906 -5.7467 0.1065 12 1 3.7905 -6.1197 -1.0468 13 1 3.6006 -6.6224 1.3178 14 6 1.3836 -0.5284 2.3742 15 8 1.2549 -1.4718 3.1303 16 6 0.8450 0.7940 2.7462 17 6 0.3946 1.6747 1.7571 18 6 -0.1131 2.9064 2.1080 19 6 -0.1713 3.2879 3.4390 20 6 0.2754 2.4296 4.4285 21 6 0.7866 1.1778 4.0889 22 8 1.2236 0.3455 5.0674 23 6 1.8078 0.9582 6.2199 24 1 2.7985 1.3361 5.9671 25 6 1.9280 -0.0766 7.3404 26 6 0.9382 2.0997 6.6821 27 8 0.8826 2.3849 7.8598 28 7 0.2206 2.8033 5.7793 29 1 -0.3634 0.3414 0.9692 30 1 -0.3633 0.6688 -0.7804 31 1 -0.3634 -1.0100 -0.1891 32 1 1.8933 -0.5139 -0.8898 33 1 2.9337 1.5118 -0.6202 34 1 1.2684 2.1007 -0.3997 35 1 2.2812 1.7426 1.0197 36 1 3.7205 -1.5516 2.0678 37 1 3.8618 -1.1909 0.3306 38 1 5.6443 -4.3878 0.7133 39 1 0.4411 1.3870 0.7171 40 1 -0.4635 3.5809 1.3407 41 1 -0.5664 4.2573 3.7048 42 1 0.9375 -0.4540 7.5943 43 1 2.5568 -0.9021 7.0066 44 1 2.3755 0.3889 8.2184 45 1 -0.3236 3.5552 6.0606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519099499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:46 Heat of formation + Delta-G solvation = 10.864452 kcal Electronic energy + Delta-G solvation = -29997.601414 eV Core-core repulsion = 25984.356187 eV Total energy + Delta-G solvation = -4013.245227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78998 -40.40328 -38.46039 -37.65808 -36.39237 -35.10034 -33.20496 -32.16154 -31.50922 -30.35105 -28.83838 -27.27923 -26.97184 -25.12421 -23.96557 -23.49445 -22.31451 -21.91036 -19.87743 -19.16189 -18.69142 -17.47882 -17.03897 -16.51753 -16.39059 -16.03180 -15.38244 -15.36953 -14.91953 -14.69861 -14.61321 -14.44446 -13.90445 -13.76709 -13.45046 -13.27270 -13.00214 -12.75758 -12.40450 -12.26401 -12.19935 -12.15434 -11.99930 -11.65484 -11.40266 -11.19757 -11.13087 -11.07264 -10.80369 -10.59045 -10.55049 -10.13035 -10.06739 -9.83088 -9.56762 -9.05279 -8.64561 -8.39204 -7.99208 -7.51955 -5.99449 -4.02761 0.82397 1.01631 2.11036 2.55789 3.10751 3.14897 3.33513 3.41488 3.46677 3.69561 3.83476 3.93576 4.46353 4.51199 4.66103 4.75334 4.82502 4.93352 4.99017 5.05995 5.12682 5.30285 5.34552 5.46116 5.58773 5.63538 5.67989 5.70942 5.75534 5.82775 5.92038 6.01456 6.09063 6.18891 6.28372 6.30147 6.39563 6.49147 6.56635 6.63098 7.08742 7.25217 7.36222 7.59183 7.67628 7.98123 8.27566 8.43513 8.88352 9.05307 9.62080 11.08036 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004243 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.829181 B = 6597.078417 C = 8158.344035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.138 3.862 3 C -0.182 4.182 4 N -0.619 5.619 5 C 0.257 3.743 6 C -0.516 4.516 7 H 0.061 0.939 8 C 0.058 3.942 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.566 3.434 15 O -0.486 6.486 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.137 4.137 19 C -0.104 4.104 20 C 0.067 3.933 21 C 0.132 3.868 22 O -0.271 6.271 23 C 0.073 3.927 24 H 0.104 0.896 25 C -0.134 4.134 26 C 0.494 3.506 27 O -0.512 6.512 28 N -0.658 5.658 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.261 0.739 39 H 0.213 0.787 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 17.300 2.118 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C 0.033 3.967 3 C -0.240 4.240 4 N -0.354 5.354 5 C 0.138 3.862 6 C -0.555 4.555 7 H 0.079 0.921 8 C -0.143 4.143 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.352 3.648 15 O -0.359 6.359 16 C -0.133 4.133 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.125 4.125 20 C -0.028 4.028 21 C 0.083 3.917 22 O -0.184 6.184 23 C 0.013 3.987 24 H 0.122 0.878 25 C -0.191 4.191 26 C 0.281 3.719 27 O -0.387 6.387 28 N -0.306 5.306 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.228 0.772 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.657 16.445 3.241 18.865 hybrid contribution -0.453 -0.242 -0.067 0.518 sum -9.110 16.203 3.174 18.858 Atomic orbital electron populations 1.23309 0.96133 1.03799 1.03785 1.21017 0.92934 0.92359 0.90387 1.22962 1.01333 0.96738 1.03001 1.47874 1.32293 1.49390 1.05797 1.19232 0.80749 0.88366 0.97814 1.21550 0.93649 0.93435 1.46876 0.92113 1.24938 0.94808 0.99017 0.95520 1.69934 1.00221 1.33329 1.50485 0.86470 0.78789 0.84591 0.77745 1.19782 1.21144 1.21002 1.17709 0.78357 0.86199 0.82561 1.90789 1.51613 1.40603 1.52865 1.20037 1.05058 0.98301 0.89861 1.24088 0.94123 0.92347 1.04135 1.20914 1.02482 0.96987 0.95173 1.20716 1.01186 0.98483 0.92126 1.17874 1.05982 0.94889 0.84087 1.18580 0.96786 0.87944 0.88344 1.86505 1.74678 1.31529 1.25721 1.22717 0.95961 0.92755 0.87236 0.87818 1.21696 1.04393 0.97979 0.95021 1.21661 0.80497 0.83707 0.85996 1.90764 1.63795 1.68107 1.16021 1.43673 1.47284 1.34135 1.05486 0.88972 0.90886 0.91313 0.88329 0.92233 0.91763 0.90959 0.95103 0.94709 0.92921 0.77199 0.84810 0.85140 0.91083 0.89567 0.89261 0.74751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.76 7.74 37.15 0.29 -2.47 16 2 C 0.14 2.11 3.19 -67.93 -0.22 1.90 16 3 C -0.18 -2.17 8.07 37.16 0.30 -1.87 16 4 N -0.62 -12.71 2.34 -168.69 -0.39 -13.10 16 5 C 0.26 6.50 5.09 -5.19 -0.03 6.48 16 6 C -0.52 -14.49 9.26 -34.44 -0.32 -14.81 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 10 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.57 11.91 5.89 -12.47 -0.07 11.84 16 15 O -0.49 -12.42 16.12 -13.28 -0.21 -12.63 16 16 C -0.13 -2.10 5.00 -104.91 -0.52 -2.62 16 17 C -0.13 -1.58 4.23 -39.14 -0.17 -1.75 16 18 C -0.14 -1.29 10.02 -39.63 -0.40 -1.68 16 19 C -0.10 -1.00 9.94 -39.40 -0.39 -1.39 16 20 C 0.07 0.83 6.54 -83.50 -0.55 0.28 16 21 C 0.13 2.11 6.41 -38.57 -0.25 1.86 16 22 O -0.27 -4.73 8.66 -37.34 -0.32 -5.06 16 23 C 0.07 1.02 3.68 -27.85 -0.10 0.91 16 24 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 25 C -0.13 -1.68 9.14 37.16 0.34 -1.34 16 26 C 0.49 6.73 7.65 -10.82 -0.08 6.65 16 27 O -0.51 -7.87 17.01 5.54 0.09 -7.78 16 28 N -0.66 -7.59 5.48 -9.67 -0.05 -7.64 16 29 H 0.09 1.23 3.53 -66.75 -0.24 1.00 16 30 H 0.07 0.66 7.81 -51.93 -0.41 0.25 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.57 8.01 -51.93 -0.42 1.16 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.55 6.67 -51.93 -0.35 0.20 16 35 H 0.07 0.95 5.52 -51.93 -0.29 0.66 16 36 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 37 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.21 2.35 0.80 -102.78 -0.08 2.27 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 45 H 0.41 3.65 8.89 -40.82 -0.36 3.29 16 LS Contribution 359.21 15.07 5.41 5.41 Total: -1.00 -35.07 359.21 -7.91 -42.98 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.88 Total: 2.95 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -2.26 Total: 3.55 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.29 Total: -46.40 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.44 Total: -25.47 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.07 -7.91 -42.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519099499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.842 kcal (2) G-P(sol) polarization free energy of solvation -35.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds