Wall clock time and date at job start Tue Mar 31 2020 17:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47286 * 2 1 4 4 N 1.46501 * 109.46683 * 119.99348 * 2 1 3 5 5 C 1.46507 * 119.99749 * 141.33309 * 4 2 1 6 6 C 1.50697 * 109.46985 * 269.99893 * 5 4 2 7 7 H 1.07995 * 120.00061 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00076 * 179.72470 * 6 5 4 9 9 N 1.31515 * 119.99692 * 0.27700 * 8 6 5 10 10 Si 1.86793 * 120.00276 * 180.27635 * 8 6 5 11 11 H 1.48501 * 109.47143 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47262 * 119.99921 * 10 8 6 13 13 H 1.48499 * 109.47247 * 239.99826 * 10 8 6 14 14 C 1.34771 * 120.00369 * 321.33186 * 4 2 1 15 15 O 1.21588 * 120.00156 * 141.65621 * 14 4 2 16 16 C 1.47548 * 120.00196 * 321.65817 * 14 4 2 17 17 C 1.39888 * 120.23250 * 30.84672 * 16 14 4 18 18 C 1.37764 * 120.09466 * 179.72035 * 17 16 14 19 19 C 1.38581 * 120.41701 * 0.56673 * 18 17 16 20 20 C 1.38392 * 120.15704 * 359.68837 * 19 18 17 21 21 C 1.39418 * 120.07132 * 0.04710 * 20 19 18 22 22 O 1.35690 * 119.55171 * 179.89788 * 21 20 19 23 23 C 1.43003 * 116.73649 * 327.20959 * 22 21 20 24 24 H 1.08999 * 109.44682 * 286.34631 * 23 22 21 25 25 C 1.53001 * 109.42022 * 166.42356 * 23 22 21 26 26 C 1.50758 * 109.62425 * 46.39326 * 23 22 21 27 27 O 1.21300 * 120.13968 * 148.67540 * 26 23 22 28 28 N 1.35090 * 119.72453 * 328.70149 * 26 23 22 29 29 H 1.08998 * 109.47594 * 289.40516 * 1 2 3 30 30 H 1.09004 * 109.46731 * 49.40262 * 1 2 3 31 31 H 1.08994 * 109.47394 * 169.39756 * 1 2 3 32 32 H 1.08990 * 109.47609 * 239.99373 * 2 1 3 33 33 H 1.09001 * 109.47064 * 217.11800 * 3 2 1 34 34 H 1.09007 * 109.47001 * 337.11376 * 3 2 1 35 35 H 1.08994 * 109.47394 * 97.11713 * 3 2 1 36 36 H 1.08999 * 109.47063 * 149.99679 * 5 4 2 37 37 H 1.08994 * 109.46951 * 30.00124 * 5 4 2 38 38 H 0.96996 * 119.99918 * 180.02562 * 9 8 6 39 39 H 1.08003 * 119.95191 * 359.97438 * 17 16 14 40 40 H 1.08005 * 119.79717 * 180.26829 * 18 17 16 41 41 H 1.08005 * 119.92317 * 179.70495 * 19 18 17 42 42 H 1.08998 * 109.47216 * 299.86316 * 25 23 22 43 43 H 1.09002 * 109.46558 * 59.86135 * 25 23 22 44 44 H 1.08994 * 109.47002 * 179.85935 * 25 23 22 45 45 H 0.97000 * 120.52696 * 181.69064 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 3.1963 -1.5573 1.1122 6 6 2.7633 -2.9631 0.7850 7 1 1.7154 -3.1883 0.6526 8 6 3.7054 -3.9606 0.6487 9 7 4.9815 -3.6862 0.8095 10 14 3.1693 -5.7016 0.2355 11 1 1.6906 -5.7467 0.1065 12 1 3.7905 -6.1197 -1.0468 13 1 3.6006 -6.6224 1.3178 14 6 1.3836 -0.5284 2.3742 15 8 1.2549 -1.4718 3.1303 16 6 0.8450 0.7940 2.7462 17 6 0.3946 1.6747 1.7571 18 6 -0.1131 2.9064 2.1080 19 6 -0.1713 3.2879 3.4390 20 6 0.2754 2.4296 4.4285 21 6 0.7866 1.1778 4.0889 22 8 1.2236 0.3455 5.0674 23 6 1.8078 0.9582 6.2199 24 1 2.7985 1.3361 5.9671 25 6 1.9280 -0.0766 7.3404 26 6 0.9382 2.0997 6.6821 27 8 0.8826 2.3849 7.8598 28 7 0.2206 2.8033 5.7793 29 1 -0.3634 0.3414 0.9692 30 1 -0.3633 0.6688 -0.7804 31 1 -0.3634 -1.0100 -0.1891 32 1 1.8933 -0.5139 -0.8898 33 1 2.9337 1.5118 -0.6202 34 1 1.2684 2.1007 -0.3997 35 1 2.2812 1.7426 1.0197 36 1 3.7205 -1.5516 2.0678 37 1 3.8618 -1.1909 0.3306 38 1 5.6443 -4.3878 0.7133 39 1 0.4411 1.3870 0.7171 40 1 -0.4635 3.5809 1.3407 41 1 -0.5664 4.2573 3.7048 42 1 0.9375 -0.4540 7.5943 43 1 2.5568 -0.9021 7.0066 44 1 2.3755 0.3889 8.2184 45 1 -0.3236 3.5552 6.0606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519099499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:45 Heat of formation + Delta-G solvation = -13.607210 kcal Electronic energy + Delta-G solvation = -29998.662585 eV Core-core repulsion = 25984.356187 eV Total energy + Delta-G solvation = -4014.306397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.87190 -41.64560 -39.63321 -38.88458 -37.74878 -36.28911 -35.10253 -33.31820 -33.10380 -31.46865 -29.85798 -29.03844 -28.14796 -26.24412 -25.44885 -24.56680 -23.94525 -23.14542 -20.91232 -20.29702 -19.86918 -18.72876 -18.52687 -18.14526 -17.60925 -17.30476 -16.92519 -16.60024 -16.27630 -15.94860 -15.84658 -15.68168 -15.41005 -14.92833 -14.63405 -14.45971 -14.18017 -13.96183 -13.84551 -13.66185 -13.41068 -13.25535 -13.20474 -13.04376 -12.96261 -12.76339 -12.53936 -12.39333 -12.24157 -12.16458 -12.00467 -11.64883 -11.54424 -11.19533 -10.82010 -10.72729 -10.57442 -9.72344 -9.22172 -8.95297 -8.18153 -6.31990 -0.18283 0.02008 1.08649 1.34757 1.37791 1.49697 1.58431 1.76084 2.12534 2.28323 2.44182 2.71751 2.82465 3.09191 3.45775 3.60967 3.73165 3.81900 3.84893 3.97334 4.12526 4.23991 4.26587 4.49158 4.57540 4.60771 4.65848 4.73582 4.79055 4.89746 4.94594 4.99900 5.05576 5.09758 5.15511 5.21924 5.32396 5.38316 5.41976 5.52124 5.65780 5.66546 5.69379 6.00834 6.11297 6.20052 6.63934 6.75684 6.86051 7.26988 7.42385 8.86832 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004243 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.829181 B = 6597.078417 C = 8158.344035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.124 3.876 3 C -0.174 4.174 4 N -0.625 5.625 5 C 0.274 3.726 6 C -0.532 4.532 7 H 0.045 0.955 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.961 3.039 11 H -0.273 1.273 12 H -0.266 1.266 13 H -0.283 1.283 14 C 0.561 3.439 15 O -0.555 6.555 16 C -0.158 4.158 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.078 4.078 20 C 0.059 3.941 21 C 0.101 3.899 22 O -0.309 6.309 23 C 0.063 3.937 24 H 0.112 0.888 25 C -0.130 4.130 26 C 0.498 3.502 27 O -0.533 6.533 28 N -0.643 5.643 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.116 0.884 35 H 0.060 0.940 36 H -0.013 1.013 37 H 0.031 0.969 38 H 0.266 0.734 39 H 0.222 0.778 40 H 0.189 0.811 41 H 0.178 0.822 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.106 21.000 0.199 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.021 3.979 3 C -0.231 4.231 4 N -0.359 5.359 5 C 0.153 3.847 6 C -0.570 4.570 7 H 0.063 0.937 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.786 3.214 11 H -0.198 1.198 12 H -0.191 1.191 13 H -0.209 1.209 14 C 0.351 3.649 15 O -0.433 6.433 16 C -0.163 4.163 17 C -0.138 4.138 18 C -0.134 4.134 19 C -0.098 4.098 20 C -0.036 4.036 21 C 0.053 3.947 22 O -0.223 6.223 23 C 0.004 3.996 24 H 0.129 0.871 25 C -0.187 4.187 26 C 0.285 3.715 27 O -0.410 6.410 28 N -0.292 5.292 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.005 0.995 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.238 0.762 40 H 0.206 0.794 41 H 0.195 0.805 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.125 0.875 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -10.912 20.210 1.265 23.003 hybrid contribution 0.223 -1.324 0.483 1.427 sum -10.688 18.886 1.748 21.771 Atomic orbital electron populations 1.23327 0.93866 1.03711 1.05542 1.21431 0.94876 0.94125 0.87480 1.22878 1.02971 0.94532 1.02732 1.47885 1.30938 1.49134 1.07976 1.18683 0.82558 0.88557 0.94950 1.21753 0.92936 0.95207 1.47146 0.93651 1.25765 0.94855 1.03081 0.95254 1.70032 1.01147 1.34737 1.51000 0.85469 0.78313 0.79494 0.78134 1.19808 1.19128 1.20890 1.18520 0.77195 0.87662 0.81549 1.90729 1.54828 1.43240 1.54483 1.19700 1.08481 0.96689 0.91424 1.24199 0.93360 0.92702 1.03490 1.21496 0.99769 0.95838 0.96343 1.21325 0.97950 0.99216 0.91355 1.17986 1.06476 0.94138 0.84982 1.18926 0.98295 0.89524 0.87936 1.86462 1.75361 1.33542 1.26918 1.22882 0.96512 0.93408 0.86785 0.87102 1.21686 1.03878 0.97734 0.95407 1.21447 0.80602 0.83569 0.85899 1.90751 1.64750 1.68774 1.16731 1.43471 1.46716 1.34031 1.04970 0.89110 0.85422 0.93966 0.89662 0.92153 0.86601 0.92080 0.99535 0.95081 0.92504 0.76222 0.79417 0.80451 0.91823 0.90519 0.87482 0.72831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.95 7.74 71.98 0.56 -4.40 16 2 C 0.12 3.74 3.19 44.99 0.14 3.88 16 3 C -0.17 -3.62 8.07 71.98 0.58 -3.04 16 4 N -0.62 -27.17 2.34 -805.89 -1.88 -29.06 16 5 C 0.27 14.91 5.09 85.63 0.44 15.35 16 6 C -0.53 -31.64 9.26 25.60 0.24 -31.40 16 7 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 8 C 0.01 0.52 5.46 84.66 0.46 0.99 16 9 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 10 Si 0.96 46.50 29.54 68.60 2.03 48.52 16 11 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 14 C 0.56 25.24 5.89 86.70 0.51 25.75 16 15 O -0.56 -31.12 16.12 13.76 0.22 -30.90 16 16 C -0.16 -5.23 5.00 -20.05 -0.10 -5.33 16 17 C -0.12 -2.52 4.23 22.56 0.10 -2.43 16 18 C -0.12 -1.42 10.02 22.24 0.22 -1.20 16 19 C -0.08 -1.04 9.94 22.39 0.22 -0.82 16 20 C 0.06 1.32 6.54 38.11 0.25 1.57 16 21 C 0.10 3.26 6.41 22.93 0.15 3.41 16 22 O -0.31 -11.58 8.66 -72.34 -0.63 -12.21 16 23 C 0.06 1.87 3.68 29.87 0.11 1.98 16 24 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 25 C -0.13 -3.53 9.14 71.98 0.66 -2.88 16 26 C 0.50 13.45 7.65 87.63 0.67 14.12 16 27 O -0.53 -16.22 17.01 -3.09 -0.05 -16.27 16 28 N -0.64 -13.50 5.48 -302.72 -1.66 -15.15 16 29 H 0.09 2.25 3.53 -16.31 -0.06 2.19 16 30 H 0.13 1.62 7.81 -2.39 -0.02 1.60 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 2.76 8.01 -2.39 -0.02 2.74 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.12 1.23 6.67 -2.38 -0.02 1.21 16 35 H 0.06 1.47 5.52 -2.39 -0.01 1.45 16 36 H -0.01 -0.84 8.03 -2.39 -0.02 -0.86 16 37 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.22 3.99 0.80 -50.15 -0.04 3.95 16 40 H 0.19 0.47 8.06 -2.91 -0.02 0.44 16 41 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.11 2.45 7.86 -2.39 -0.02 2.43 16 45 H 0.43 6.16 8.89 -92.71 -0.82 5.34 16 Total: -1.00 -86.63 359.21 3.65 -82.97 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.14 Total: 12.80 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.20 Total: 15.56 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.26 Total: -100.48 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: -0.46 Total: -59.37 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Total: -86.63 3.65 -82.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519099499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.366 kcal (2) G-P(sol) polarization free energy of solvation -86.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds