Wall clock time and date at job start Tue Mar 31 2020 17:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 N 1.46497 * 109.47703 * 120.00427 * 2 1 3 5 5 C 1.46500 * 119.99753 * 304.91716 * 4 2 1 6 6 C 1.50704 * 109.47407 * 270.00154 * 5 4 2 7 7 H 1.07994 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00234 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99744 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47379 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47344 * 119.99991 * 10 8 6 13 13 H 1.48501 * 109.47051 * 239.99710 * 10 8 6 14 14 C 1.34773 * 120.00642 * 124.91973 * 4 2 1 15 15 O 1.21591 * 120.00565 * 185.63213 * 14 4 2 16 16 C 1.47547 * 119.99683 * 5.62227 * 14 4 2 17 17 C 1.39885 * 120.23429 * 54.37981 * 16 14 4 18 18 C 1.37776 * 120.09793 * 180.24285 * 17 16 14 19 19 C 1.38573 * 120.41671 * 0.03162 * 18 17 16 20 20 C 1.38397 * 120.15708 * 359.96053 * 19 18 17 21 21 C 1.39413 * 120.06999 * 0.04648 * 20 19 18 22 22 O 1.35695 * 119.55095 * 179.88066 * 21 20 19 23 23 C 1.42997 * 116.73530 * 327.21583 * 22 21 20 24 24 H 1.09000 * 109.42203 * 166.43123 * 23 22 21 25 25 C 1.52997 * 109.44729 * 286.35045 * 23 22 21 26 26 C 1.50756 * 109.62329 * 46.39922 * 23 22 21 27 27 O 1.21299 * 120.13567 * 148.71906 * 26 23 22 28 28 N 1.35092 * 119.72375 * 328.69788 * 26 23 22 29 29 H 1.08998 * 109.46982 * 299.99124 * 1 2 3 30 30 H 1.08997 * 109.47652 * 59.99940 * 1 2 3 31 31 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47253 * 240.00550 * 2 1 3 33 33 H 1.09004 * 109.47041 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46912 * 300.00513 * 3 2 1 35 35 H 1.08998 * 109.46483 * 60.00570 * 3 2 1 36 36 H 1.09005 * 109.47074 * 30.00058 * 5 4 2 37 37 H 1.08999 * 109.47368 * 150.00049 * 5 4 2 38 38 H 0.96997 * 120.00027 * 179.97438 * 9 8 6 39 39 H 1.08001 * 119.95095 * 0.24469 * 17 16 14 40 40 H 1.07999 * 119.79053 * 179.97438 * 18 17 16 41 41 H 1.07996 * 119.92295 * 179.97438 * 19 18 17 42 42 H 1.09002 * 109.47549 * 180.15528 * 25 23 22 43 43 H 1.09001 * 109.47798 * 300.15503 * 25 23 22 44 44 H 1.09001 * 109.46976 * 60.15825 * 25 23 22 45 45 H 0.96992 * 120.52391 * 181.63906 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.5779 -0.2561 2.5240 6 6 2.5252 0.7915 3.0497 7 1 3.3710 1.1021 2.4543 8 6 2.3127 1.3525 4.2911 9 7 1.2830 0.9738 5.0163 10 14 3.4874 2.6504 4.9429 11 1 4.5565 2.8978 3.9423 12 1 2.7428 3.9105 5.1942 13 1 4.0970 2.1745 6.2106 14 6 2.8730 -1.7257 1.0749 15 8 3.1984 -2.3638 2.0574 16 6 3.4135 -2.0848 -0.2502 17 6 4.0627 -1.1223 -1.0305 18 6 4.5620 -1.4594 -2.2696 19 6 4.4256 -2.7508 -2.7533 20 6 3.7860 -3.7141 -1.9929 21 6 3.2755 -3.3877 -0.7373 22 8 2.6482 -4.3398 -0.0017 23 6 1.9179 -5.3341 -0.7248 24 1 1.6702 -6.1591 -0.0570 25 6 0.6293 -4.7199 -1.2753 26 6 2.7570 -5.8477 -1.8671 27 8 2.6370 -6.9946 -2.2433 28 7 3.6427 -5.0251 -2.4703 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9562 0.8901 36 1 0.5743 0.1636 2.4546 37 1 1.5686 -1.1101 3.2012 38 1 1.1338 1.3682 5.8898 39 1 4.1727 -0.1134 -0.6611 40 1 5.0619 -0.7122 -2.8681 41 1 4.8197 -3.0062 -3.7258 42 1 0.0709 -5.4782 -1.8243 43 1 0.0222 -4.3484 -0.4497 44 1 0.8765 -3.8956 -1.9441 45 1 4.1715 -5.3363 -3.2216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519099500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:51 Heat of formation + Delta-G solvation = -72.512631 kcal Electronic energy + Delta-G solvation = -29950.905344 eV Core-core repulsion = 25934.044615 eV Total energy + Delta-G solvation = -4016.860728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80306 -39.68826 -38.45707 -37.66315 -35.93413 -35.23908 -32.83808 -32.14190 -30.95976 -30.64671 -29.23921 -27.35878 -26.77566 -25.09061 -24.26182 -23.57623 -22.55497 -21.27295 -19.71225 -19.41988 -18.64624 -17.52616 -16.90858 -16.48472 -16.23287 -16.11256 -15.58613 -15.53075 -15.08675 -14.86666 -14.54471 -14.33933 -13.86145 -13.55090 -13.37066 -13.23311 -13.05526 -12.70049 -12.55699 -12.37266 -12.30749 -12.07788 -11.89296 -11.66666 -11.47831 -11.32726 -11.29741 -10.99797 -10.91343 -10.80733 -10.56117 -10.36309 -10.21304 -10.01229 -9.53393 -9.08706 -8.67607 -8.41561 -8.13716 -7.64838 -6.03438 -4.07033 0.81907 0.97253 2.05225 2.48889 3.09853 3.21651 3.29457 3.38015 3.40612 3.62991 3.73437 3.90184 4.40949 4.47174 4.53878 4.67510 4.80140 4.95651 5.02651 5.11839 5.28005 5.30726 5.33571 5.41814 5.43665 5.57510 5.65903 5.73135 5.77828 5.96451 6.00157 6.12772 6.20367 6.24392 6.27452 6.33486 6.46825 6.55177 6.59734 6.92864 7.08246 7.18027 7.49125 7.51326 7.56668 7.93557 8.24886 8.41057 8.90264 9.07220 9.57245 11.04656 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.003745 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.043572 B = 7474.274727 C = 7802.208229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 C -0.160 4.160 4 N -0.584 5.584 5 C 0.245 3.755 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.894 3.106 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.554 3.446 15 O -0.521 6.521 16 C -0.101 4.101 17 C -0.079 4.079 18 C -0.117 4.117 19 C -0.113 4.113 20 C 0.081 3.919 21 C 0.121 3.879 22 O -0.278 6.278 23 C 0.074 3.926 24 H 0.152 0.848 25 C -0.176 4.176 26 C 0.498 3.502 27 O -0.515 6.515 28 N -0.657 5.657 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -5.042 -19.357 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 C -0.218 4.218 4 N -0.315 5.315 5 C 0.126 3.874 6 C -0.560 4.560 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.722 3.278 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.210 1.210 14 C 0.339 3.661 15 O -0.398 6.398 16 C -0.106 4.106 17 C -0.098 4.098 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.014 4.014 21 C 0.073 3.927 22 O -0.191 6.191 23 C 0.015 3.985 24 H 0.169 0.831 25 C -0.234 4.234 26 C 0.285 3.715 27 O -0.389 6.389 28 N -0.304 5.304 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.860 -6.014 -18.477 19.451 hybrid contribution 0.974 0.611 -0.157 1.160 sum 1.834 -5.403 -18.634 19.488 Atomic orbital electron populations 1.22135 0.95410 1.01803 1.02523 1.21077 0.94316 0.93917 0.88132 1.22219 1.01031 0.95946 1.02588 1.48234 1.44079 1.30290 1.08945 1.19310 0.95313 0.95834 0.76957 1.21474 1.11145 1.21275 1.02062 0.92235 1.24917 0.95493 0.97135 0.96530 1.69938 1.28411 1.43052 1.11884 0.86504 0.81007 0.81217 0.79056 1.19799 1.21064 1.20978 1.17777 0.80224 0.81106 0.86982 1.90798 1.58858 1.51585 1.38543 1.19734 1.03244 0.90185 0.97434 1.21360 0.95935 0.99263 0.93262 1.20873 1.00835 0.95710 0.96116 1.20666 1.00844 0.92331 0.99512 1.17883 1.03943 0.85303 0.94310 1.18445 0.96479 0.88608 0.89204 1.86484 1.63771 1.36438 1.32401 1.22957 0.91059 0.92032 0.92461 0.83071 1.22348 0.95964 1.01961 1.03123 1.21539 0.80247 0.85610 0.84069 1.90790 1.66433 1.17019 1.64684 1.43667 1.40748 1.10724 1.35246 0.91041 0.92303 0.92981 0.90568 0.92879 0.93127 0.89853 0.94485 0.93821 0.92835 0.83950 0.84551 0.84875 0.89968 0.89173 0.91550 0.74603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.07 37.15 0.34 -1.96 16 2 C 0.13 2.03 2.53 -67.93 -0.17 1.86 16 3 C -0.16 -2.41 8.47 37.16 0.31 -2.09 16 4 N -0.58 -11.92 2.39 -168.68 -0.40 -12.32 16 5 C 0.24 6.13 4.77 -5.19 -0.02 6.10 16 6 C -0.52 -13.99 7.85 -34.44 -0.27 -14.26 16 7 H 0.06 1.58 7.59 -52.49 -0.40 1.19 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 10 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.55 11.72 6.81 -12.47 -0.08 11.63 16 15 O -0.52 -13.51 16.35 3.56 0.06 -13.46 16 16 C -0.10 -1.66 4.57 -104.91 -0.48 -2.14 16 17 C -0.08 -1.01 7.73 -39.13 -0.30 -1.32 16 18 C -0.12 -1.10 10.02 -39.63 -0.40 -1.50 16 19 C -0.11 -1.02 9.94 -39.40 -0.39 -1.42 16 20 C 0.08 0.94 6.54 -83.50 -0.55 0.40 16 21 C 0.12 1.82 5.84 -38.57 -0.23 1.59 16 22 O -0.28 -4.47 9.43 -20.52 -0.19 -4.66 16 23 C 0.07 0.92 3.81 -27.86 -0.11 0.81 16 24 H 0.15 1.64 8.14 -51.93 -0.42 1.22 16 25 C -0.18 -1.80 9.30 37.16 0.35 -1.45 16 26 C 0.50 6.27 7.19 -10.82 -0.08 6.19 16 27 O -0.51 -7.60 17.95 5.54 0.10 -7.50 16 28 N -0.66 -7.00 5.48 -9.67 -0.05 -7.05 16 29 H 0.07 1.17 6.52 -51.93 -0.34 0.83 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.04 5.20 -51.93 -0.27 0.77 16 33 H 0.05 0.79 6.70 -51.93 -0.35 0.44 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16 36 H 0.04 0.93 6.18 -51.93 -0.32 0.61 16 37 H 0.04 1.27 7.35 -51.93 -0.38 0.89 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.14 1.80 6.22 -52.49 -0.33 1.48 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.68 7.81 -51.93 -0.41 0.27 16 45 H 0.41 3.36 8.89 -40.82 -0.36 2.99 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -34.48 368.30 -7.43 -41.91 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.03 Total: 2.38 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -2.18 Total: 4.04 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.28 Total: -44.53 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.04 Total: -25.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.48 -7.43 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519099500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.599 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds