Wall clock time and date at job start Tue Mar 31 2020 17:55:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53005 * 109.47111 * 2 1
4 4 N 1.46497 * 109.47703 * 120.00427 * 2 1 3
5 5 C 1.46500 * 119.99753 * 304.91716 * 4 2 1
6 6 C 1.50704 * 109.47407 * 270.00154 * 5 4 2
7 7 H 1.07994 * 119.99761 * 359.97438 * 6 5 4
8 8 C 1.37874 * 120.00030 * 180.02562 * 6 5 4
9 9 N 1.31513 * 120.00234 * 359.97438 * 8 6 5
10 10 Si 1.86800 * 119.99744 * 179.97438 * 8 6 5
11 11 H 1.48500 * 109.47379 * 359.97438 * 10 8 6
12 12 H 1.48501 * 109.47344 * 119.99991 * 10 8 6
13 13 H 1.48501 * 109.47051 * 239.99710 * 10 8 6
14 14 C 1.34773 * 120.00642 * 124.91973 * 4 2 1
15 15 O 1.21591 * 120.00565 * 185.63213 * 14 4 2
16 16 C 1.47547 * 119.99683 * 5.62227 * 14 4 2
17 17 C 1.39885 * 120.23429 * 54.37981 * 16 14 4
18 18 C 1.37776 * 120.09793 * 180.24285 * 17 16 14
19 19 C 1.38573 * 120.41671 * 0.03162 * 18 17 16
20 20 C 1.38397 * 120.15708 * 359.96053 * 19 18 17
21 21 C 1.39413 * 120.06999 * 0.04648 * 20 19 18
22 22 O 1.35695 * 119.55095 * 179.88066 * 21 20 19
23 23 C 1.42997 * 116.73530 * 327.21583 * 22 21 20
24 24 H 1.09000 * 109.42203 * 166.43123 * 23 22 21
25 25 C 1.52997 * 109.44729 * 286.35045 * 23 22 21
26 26 C 1.50756 * 109.62329 * 46.39922 * 23 22 21
27 27 O 1.21299 * 120.13567 * 148.71906 * 26 23 22
28 28 N 1.35092 * 119.72375 * 328.69788 * 26 23 22
29 29 H 1.08998 * 109.46982 * 299.99124 * 1 2 3
30 30 H 1.08997 * 109.47652 * 59.99940 * 1 2 3
31 31 H 1.09003 * 109.46618 * 180.02562 * 1 2 3
32 32 H 1.09005 * 109.47253 * 240.00550 * 2 1 3
33 33 H 1.09004 * 109.47041 * 180.02562 * 3 2 1
34 34 H 1.08997 * 109.46912 * 300.00513 * 3 2 1
35 35 H 1.08998 * 109.46483 * 60.00570 * 3 2 1
36 36 H 1.09005 * 109.47074 * 30.00058 * 5 4 2
37 37 H 1.08999 * 109.47368 * 150.00049 * 5 4 2
38 38 H 0.96997 * 120.00027 * 179.97438 * 9 8 6
39 39 H 1.08001 * 119.95095 * 0.24469 * 17 16 14
40 40 H 1.07999 * 119.79053 * 179.97438 * 18 17 16
41 41 H 1.07996 * 119.92295 * 179.97438 * 19 18 17
42 42 H 1.09002 * 109.47549 * 180.15528 * 25 23 22
43 43 H 1.09001 * 109.47798 * 300.15503 * 25 23 22
44 44 H 1.09001 * 109.46976 * 60.15825 * 25 23 22
45 45 H 0.96992 * 120.52391 * 181.63906 * 28 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 7 2.0184 -0.6907 1.1960
5 6 1.5779 -0.2561 2.5240
6 6 2.5252 0.7915 3.0497
7 1 3.3710 1.1021 2.4543
8 6 2.3127 1.3525 4.2911
9 7 1.2830 0.9738 5.0163
10 14 3.4874 2.6504 4.9429
11 1 4.5565 2.8978 3.9423
12 1 2.7428 3.9105 5.1942
13 1 4.0970 2.1745 6.2106
14 6 2.8730 -1.7257 1.0749
15 8 3.1984 -2.3638 2.0574
16 6 3.4135 -2.0848 -0.2502
17 6 4.0627 -1.1223 -1.0305
18 6 4.5620 -1.4594 -2.2696
19 6 4.4256 -2.7508 -2.7533
20 6 3.7860 -3.7141 -1.9929
21 6 3.2755 -3.3877 -0.7373
22 8 2.6482 -4.3398 -0.0017
23 6 1.9179 -5.3341 -0.7248
24 1 1.6702 -6.1591 -0.0570
25 6 0.6293 -4.7199 -1.2753
26 6 2.7570 -5.8477 -1.8671
27 8 2.6370 -6.9946 -2.2433
28 7 3.6427 -5.0251 -2.4703
29 1 -0.3633 0.5137 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8901
33 1 3.1300 1.4425 -0.0005
34 1 1.6765 1.9564 -0.8899
35 1 1.6766 1.9562 0.8901
36 1 0.5743 0.1636 2.4546
37 1 1.5686 -1.1101 3.2012
38 1 1.1338 1.3682 5.8898
39 1 4.1727 -0.1134 -0.6611
40 1 5.0619 -0.7122 -2.8681
41 1 4.8197 -3.0062 -3.7258
42 1 0.0709 -5.4782 -1.8243
43 1 0.0222 -4.3484 -0.4497
44 1 0.8765 -3.8956 -1.9441
45 1 4.1715 -5.3363 -3.2216
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000519099500.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:55:51
Heat of formation + Delta-G solvation = -72.512631 kcal
Electronic energy + Delta-G solvation = -29950.905344 eV
Core-core repulsion = 25934.044615 eV
Total energy + Delta-G solvation = -4016.860728 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 332.157 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.80306 -39.68826 -38.45707 -37.66315 -35.93413 -35.23908 -32.83808 -32.14190
-30.95976 -30.64671 -29.23921 -27.35878 -26.77566 -25.09061 -24.26182 -23.57623
-22.55497 -21.27295 -19.71225 -19.41988 -18.64624 -17.52616 -16.90858 -16.48472
-16.23287 -16.11256 -15.58613 -15.53075 -15.08675 -14.86666 -14.54471 -14.33933
-13.86145 -13.55090 -13.37066 -13.23311 -13.05526 -12.70049 -12.55699 -12.37266
-12.30749 -12.07788 -11.89296 -11.66666 -11.47831 -11.32726 -11.29741 -10.99797
-10.91343 -10.80733 -10.56117 -10.36309 -10.21304 -10.01229 -9.53393 -9.08706
-8.67607 -8.41561 -8.13716 -7.64838 -6.03438 -4.07033 0.81907 0.97253
2.05225 2.48889 3.09853 3.21651 3.29457 3.38015 3.40612 3.62991
3.73437 3.90184 4.40949 4.47174 4.53878 4.67510 4.80140 4.95651
5.02651 5.11839 5.28005 5.30726 5.33571 5.41814 5.43665 5.57510
5.65903 5.73135 5.77828 5.96451 6.00157 6.12772 6.20367 6.24392
6.27452 6.33486 6.46825 6.55177 6.59734 6.92864 7.08246 7.18027
7.49125 7.51326 7.56668 7.93557 8.24886 8.41057 8.90264 9.07220
9.57245 11.04656
Molecular weight = 332.16amu
Principal moments of inertia in cm(-1)
A = 0.017226 B = 0.003745 C = 0.003588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1625.043572 B = 7474.274727 C = 7802.208229
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.130 3.870
3 C -0.160 4.160
4 N -0.584 5.584
5 C 0.245 3.755
6 C -0.521 4.521
7 H 0.059 0.941
8 C 0.061 3.939
9 N -0.894 5.894
10 Si 0.894 3.106
11 H -0.273 1.273
12 H -0.284 1.284
13 H -0.284 1.284
14 C 0.554 3.446
15 O -0.521 6.521
16 C -0.101 4.101
17 C -0.079 4.079
18 C -0.117 4.117
19 C -0.113 4.113
20 C 0.081 3.919
21 C 0.121 3.879
22 O -0.278 6.278
23 C 0.074 3.926
24 H 0.152 0.848
25 C -0.176 4.176
26 C 0.498 3.502
27 O -0.515 6.515
28 N -0.657 5.657
29 H 0.071 0.929
30 H 0.058 0.942
31 H 0.051 0.949
32 H 0.076 0.924
33 H 0.052 0.948
34 H 0.050 0.950
35 H 0.083 0.917
36 H 0.037 0.963
37 H 0.044 0.956
38 H 0.262 0.738
39 H 0.143 0.857
40 H 0.137 0.863
41 H 0.133 0.867
42 H 0.081 0.919
43 H 0.089 0.911
44 H 0.065 0.935
45 H 0.415 0.585
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.015 -5.042 -19.357 20.029
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.026 3.974
3 C -0.218 4.218
4 N -0.315 5.315
5 C 0.126 3.874
6 C -0.560 4.560
7 H 0.078 0.922
8 C -0.141 4.141
9 N -0.533 5.533
10 Si 0.722 3.278
11 H -0.198 1.198
12 H -0.211 1.211
13 H -0.210 1.210
14 C 0.339 3.661
15 O -0.398 6.398
16 C -0.106 4.106
17 C -0.098 4.098
18 C -0.135 4.135
19 C -0.134 4.134
20 C -0.014 4.014
21 C 0.073 3.927
22 O -0.191 6.191
23 C 0.015 3.985
24 H 0.169 0.831
25 C -0.234 4.234
26 C 0.285 3.715
27 O -0.389 6.389
28 N -0.304 5.304
29 H 0.090 0.910
30 H 0.077 0.923
31 H 0.070 0.930
32 H 0.094 0.906
33 H 0.071 0.929
34 H 0.069 0.931
35 H 0.101 0.899
36 H 0.055 0.945
37 H 0.062 0.938
38 H 0.072 0.928
39 H 0.161 0.839
40 H 0.154 0.846
41 H 0.151 0.849
42 H 0.100 0.900
43 H 0.108 0.892
44 H 0.084 0.916
45 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges 0.860 -6.014 -18.477 19.451
hybrid contribution 0.974 0.611 -0.157 1.160
sum 1.834 -5.403 -18.634 19.488
Atomic orbital electron populations
1.22135 0.95410 1.01803 1.02523 1.21077 0.94316 0.93917 0.88132
1.22219 1.01031 0.95946 1.02588 1.48234 1.44079 1.30290 1.08945
1.19310 0.95313 0.95834 0.76957 1.21474 1.11145 1.21275 1.02062
0.92235 1.24917 0.95493 0.97135 0.96530 1.69938 1.28411 1.43052
1.11884 0.86504 0.81007 0.81217 0.79056 1.19799 1.21064 1.20978
1.17777 0.80224 0.81106 0.86982 1.90798 1.58858 1.51585 1.38543
1.19734 1.03244 0.90185 0.97434 1.21360 0.95935 0.99263 0.93262
1.20873 1.00835 0.95710 0.96116 1.20666 1.00844 0.92331 0.99512
1.17883 1.03943 0.85303 0.94310 1.18445 0.96479 0.88608 0.89204
1.86484 1.63771 1.36438 1.32401 1.22957 0.91059 0.92032 0.92461
0.83071 1.22348 0.95964 1.01961 1.03123 1.21539 0.80247 0.85610
0.84069 1.90790 1.66433 1.17019 1.64684 1.43667 1.40748 1.10724
1.35246 0.91041 0.92303 0.92981 0.90568 0.92879 0.93127 0.89853
0.94485 0.93821 0.92835 0.83950 0.84551 0.84875 0.89968 0.89173
0.91550 0.74603
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.30 9.07 37.15 0.34 -1.96 16
2 C 0.13 2.03 2.53 -67.93 -0.17 1.86 16
3 C -0.16 -2.41 8.47 37.16 0.31 -2.09 16
4 N -0.58 -11.92 2.39 -168.68 -0.40 -12.32 16
5 C 0.24 6.13 4.77 -5.19 -0.02 6.10 16
6 C -0.52 -13.99 7.85 -34.44 -0.27 -14.26 16
7 H 0.06 1.58 7.59 -52.49 -0.40 1.19 16
8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
9 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16
10 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16
11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
14 C 0.55 11.72 6.81 -12.47 -0.08 11.63 16
15 O -0.52 -13.51 16.35 3.56 0.06 -13.46 16
16 C -0.10 -1.66 4.57 -104.91 -0.48 -2.14 16
17 C -0.08 -1.01 7.73 -39.13 -0.30 -1.32 16
18 C -0.12 -1.10 10.02 -39.63 -0.40 -1.50 16
19 C -0.11 -1.02 9.94 -39.40 -0.39 -1.42 16
20 C 0.08 0.94 6.54 -83.50 -0.55 0.40 16
21 C 0.12 1.82 5.84 -38.57 -0.23 1.59 16
22 O -0.28 -4.47 9.43 -20.52 -0.19 -4.66 16
23 C 0.07 0.92 3.81 -27.86 -0.11 0.81 16
24 H 0.15 1.64 8.14 -51.93 -0.42 1.22 16
25 C -0.18 -1.80 9.30 37.16 0.35 -1.45 16
26 C 0.50 6.27 7.19 -10.82 -0.08 6.19 16
27 O -0.51 -7.60 17.95 5.54 0.10 -7.50 16
28 N -0.66 -7.00 5.48 -9.67 -0.05 -7.05 16
29 H 0.07 1.17 6.52 -51.93 -0.34 0.83 16
30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
32 H 0.08 1.04 5.20 -51.93 -0.27 0.77 16
33 H 0.05 0.79 6.70 -51.93 -0.35 0.44 16
34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
35 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16
36 H 0.04 0.93 6.18 -51.93 -0.32 0.61 16
37 H 0.04 1.27 7.35 -51.93 -0.38 0.89 16
38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
39 H 0.14 1.80 6.22 -52.49 -0.33 1.48 16
40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16
41 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16
42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
44 H 0.07 0.68 7.81 -51.93 -0.41 0.27 16
45 H 0.41 3.36 8.89 -40.82 -0.36 2.99 16
LS Contribution 368.30 15.07 5.55 5.55
Total: -1.00 -34.48 368.30 -7.43 -41.91
By element:
Atomic # 1 Polarization: 8.41 SS G_CDS: -6.03 Total: 2.38 kcal
Atomic # 6 Polarization: 6.22 SS G_CDS: -2.18 Total: 4.04 kcal
Atomic # 7 Polarization: -44.81 SS G_CDS: 0.28 Total: -44.53 kcal
Atomic # 8 Polarization: -25.58 SS G_CDS: -0.04 Total: -25.62 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal
Total LS contribution 5.55 Total: 5.55 kcal
Total: -34.48 -7.43 -41.91 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000519099500.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.599 kcal
(2) G-P(sol) polarization free energy of solvation -34.481 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.079 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds