Wall clock time and date at job start Tue Mar 31 2020 17:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 N 1.46497 * 109.47703 * 120.00427 * 2 1 3 5 5 C 1.46500 * 119.99753 * 304.91716 * 4 2 1 6 6 C 1.50704 * 109.47407 * 270.00154 * 5 4 2 7 7 H 1.07994 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00234 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99744 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47379 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47344 * 119.99991 * 10 8 6 13 13 H 1.48501 * 109.47051 * 239.99710 * 10 8 6 14 14 C 1.34773 * 120.00642 * 124.91973 * 4 2 1 15 15 O 1.21591 * 120.00565 * 185.63213 * 14 4 2 16 16 C 1.47547 * 119.99683 * 5.62227 * 14 4 2 17 17 C 1.39885 * 120.23429 * 54.37981 * 16 14 4 18 18 C 1.37776 * 120.09793 * 180.24285 * 17 16 14 19 19 C 1.38573 * 120.41671 * 0.03162 * 18 17 16 20 20 C 1.38397 * 120.15708 * 359.96053 * 19 18 17 21 21 C 1.39413 * 120.06999 * 0.04648 * 20 19 18 22 22 O 1.35695 * 119.55095 * 179.88066 * 21 20 19 23 23 C 1.42997 * 116.73530 * 327.21583 * 22 21 20 24 24 H 1.09000 * 109.42203 * 166.43123 * 23 22 21 25 25 C 1.52997 * 109.44729 * 286.35045 * 23 22 21 26 26 C 1.50756 * 109.62329 * 46.39922 * 23 22 21 27 27 O 1.21299 * 120.13567 * 148.71906 * 26 23 22 28 28 N 1.35092 * 119.72375 * 328.69788 * 26 23 22 29 29 H 1.08998 * 109.46982 * 299.99124 * 1 2 3 30 30 H 1.08997 * 109.47652 * 59.99940 * 1 2 3 31 31 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47253 * 240.00550 * 2 1 3 33 33 H 1.09004 * 109.47041 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46912 * 300.00513 * 3 2 1 35 35 H 1.08998 * 109.46483 * 60.00570 * 3 2 1 36 36 H 1.09005 * 109.47074 * 30.00058 * 5 4 2 37 37 H 1.08999 * 109.47368 * 150.00049 * 5 4 2 38 38 H 0.96997 * 120.00027 * 179.97438 * 9 8 6 39 39 H 1.08001 * 119.95095 * 0.24469 * 17 16 14 40 40 H 1.07999 * 119.79053 * 179.97438 * 18 17 16 41 41 H 1.07996 * 119.92295 * 179.97438 * 19 18 17 42 42 H 1.09002 * 109.47549 * 180.15528 * 25 23 22 43 43 H 1.09001 * 109.47798 * 300.15503 * 25 23 22 44 44 H 1.09001 * 109.46976 * 60.15825 * 25 23 22 45 45 H 0.96992 * 120.52391 * 181.63906 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.5779 -0.2561 2.5240 6 6 2.5252 0.7915 3.0497 7 1 3.3710 1.1021 2.4543 8 6 2.3127 1.3525 4.2911 9 7 1.2830 0.9738 5.0163 10 14 3.4874 2.6504 4.9429 11 1 4.5565 2.8978 3.9423 12 1 2.7428 3.9105 5.1942 13 1 4.0970 2.1745 6.2106 14 6 2.8730 -1.7257 1.0749 15 8 3.1984 -2.3638 2.0574 16 6 3.4135 -2.0848 -0.2502 17 6 4.0627 -1.1223 -1.0305 18 6 4.5620 -1.4594 -2.2696 19 6 4.4256 -2.7508 -2.7533 20 6 3.7860 -3.7141 -1.9929 21 6 3.2755 -3.3877 -0.7373 22 8 2.6482 -4.3398 -0.0017 23 6 1.9179 -5.3341 -0.7248 24 1 1.6702 -6.1591 -0.0570 25 6 0.6293 -4.7199 -1.2753 26 6 2.7570 -5.8477 -1.8671 27 8 2.6370 -6.9946 -2.2433 28 7 3.6427 -5.0251 -2.4703 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9562 0.8901 36 1 0.5743 0.1636 2.4546 37 1 1.5686 -1.1101 3.2012 38 1 1.1338 1.3682 5.8898 39 1 4.1727 -0.1134 -0.6611 40 1 5.0619 -0.7122 -2.8681 41 1 4.8197 -3.0062 -3.7258 42 1 0.0709 -5.4782 -1.8243 43 1 0.0222 -4.3484 -0.4497 44 1 0.8765 -3.8956 -1.9441 45 1 4.1715 -5.3363 -3.2216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519099500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:50 Heat of formation + Delta-G solvation = -96.961758 kcal Electronic energy + Delta-G solvation = -29951.965537 eV Core-core repulsion = 25934.044615 eV Total energy + Delta-G solvation = -4017.920922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.80218 -41.03875 -39.67234 -38.67977 -37.52768 -36.24373 -34.87523 -33.06623 -32.42274 -31.87206 -30.17499 -29.22605 -27.98966 -26.04898 -25.70454 -24.56038 -24.16995 -22.60896 -20.65491 -20.60958 -19.75352 -18.81820 -18.56439 -18.02111 -17.35539 -17.22415 -17.00923 -16.50899 -16.46727 -16.00527 -16.00124 -15.50041 -15.24277 -14.83940 -14.80593 -14.29881 -14.24488 -13.96489 -13.84658 -13.57236 -13.36724 -13.25098 -13.20972 -13.08317 -12.87220 -12.79796 -12.55139 -12.48336 -12.28206 -12.18341 -12.05934 -11.95640 -11.58492 -11.43947 -11.21728 -10.68375 -10.58328 -9.73399 -9.39261 -9.07013 -8.16384 -6.28466 -0.14015 0.01001 1.09636 1.38578 1.41520 1.52422 1.58341 1.84794 2.14809 2.26844 2.45071 2.61777 2.81755 3.13804 3.42227 3.65089 3.76990 3.81934 3.98826 4.03308 4.22785 4.25190 4.32721 4.42907 4.48447 4.52701 4.59668 4.83671 4.88805 4.90473 4.95324 5.01165 5.08976 5.10558 5.17544 5.25073 5.36311 5.39432 5.45100 5.59237 5.65263 5.66266 5.68865 5.91592 6.13586 6.16593 6.63398 6.75737 6.82748 7.32212 7.48565 8.91392 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.003745 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.043572 B = 7474.274727 C = 7802.208229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 C -0.154 4.154 4 N -0.585 5.585 5 C 0.263 3.737 6 C -0.525 4.525 7 H 0.060 0.940 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.272 1.272 13 H -0.288 1.288 14 C 0.548 3.452 15 O -0.590 6.590 16 C -0.132 4.132 17 C -0.082 4.082 18 C -0.095 4.095 19 C -0.084 4.084 20 C 0.079 3.921 21 C 0.101 3.899 22 O -0.314 6.314 23 C 0.065 3.935 24 H 0.155 0.845 25 C -0.168 4.168 26 C 0.502 3.498 27 O -0.540 6.540 28 N -0.642 5.642 29 H 0.042 0.958 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.030 0.970 37 H -0.011 1.011 38 H 0.264 0.736 39 H 0.142 0.858 40 H 0.183 0.817 41 H 0.182 0.818 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -3.561 -23.887 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.022 3.978 3 C -0.212 4.212 4 N -0.315 5.315 5 C 0.142 3.858 6 C -0.563 4.563 7 H 0.078 0.922 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.197 1.197 13 H -0.214 1.214 14 C 0.336 3.664 15 O -0.471 6.471 16 C -0.136 4.136 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.104 4.104 20 C -0.017 4.017 21 C 0.054 3.946 22 O -0.228 6.228 23 C 0.006 3.994 24 H 0.172 0.828 25 C -0.225 4.225 26 C 0.289 3.711 27 O -0.417 6.417 28 N -0.291 5.291 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.007 0.993 38 H 0.073 0.927 39 H 0.159 0.841 40 H 0.200 0.800 41 H 0.199 0.801 42 H 0.119 0.881 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 2.551 -4.494 -23.082 23.653 hybrid contribution 0.452 0.111 1.174 1.262 sum 3.003 -4.383 -21.908 22.543 Atomic orbital electron populations 1.22116 0.94495 1.01830 1.03019 1.21462 0.95096 0.94279 0.86971 1.22156 1.01065 0.95150 1.02795 1.48235 1.43908 1.30678 1.08712 1.18722 0.95012 0.93216 0.78882 1.21701 1.11104 1.21210 1.02319 0.92193 1.25814 0.97147 0.99419 0.96852 1.70071 1.30252 1.44514 1.12321 0.85441 0.79023 0.78711 0.78098 1.18609 1.19680 1.21407 1.18618 0.79243 0.79980 0.88552 1.90737 1.61191 1.53720 1.41467 1.19366 1.06527 0.92050 0.95699 1.21469 0.95887 0.98418 0.94315 1.21327 0.98810 0.96759 0.94444 1.21238 0.97656 0.91109 1.00425 1.17955 1.04209 0.86156 0.93343 1.18637 0.97409 0.87975 0.90619 1.86440 1.64603 1.37377 1.34411 1.23165 0.91721 0.91746 0.92736 0.82766 1.22290 0.94928 1.02418 1.02894 1.21441 0.80419 0.85326 0.83871 1.90781 1.67439 1.17940 1.65521 1.43492 1.40172 1.10186 1.35202 0.93933 0.88255 0.93258 0.87529 0.92819 0.88880 0.93535 0.95236 0.99287 0.92700 0.84061 0.80008 0.80114 0.88068 0.90025 0.91249 0.72766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.42 9.07 71.98 0.65 -3.77 16 2 C 0.12 3.82 2.53 44.99 0.11 3.93 16 3 C -0.15 -4.41 8.47 71.98 0.61 -3.80 16 4 N -0.59 -25.14 2.39 -805.86 -1.92 -27.06 16 5 C 0.26 14.19 4.77 85.63 0.41 14.59 16 6 C -0.52 -29.50 7.85 25.60 0.20 -29.30 16 7 H 0.06 3.28 7.59 -2.91 -0.02 3.26 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 10 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 11 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 C 0.55 24.52 6.81 86.70 0.59 25.11 16 15 O -0.59 -33.28 16.35 -2.35 -0.04 -33.32 16 16 C -0.13 -4.29 4.57 -20.05 -0.09 -4.38 16 17 C -0.08 -1.87 7.73 22.56 0.17 -1.69 16 18 C -0.10 -1.25 10.02 22.24 0.22 -1.03 16 19 C -0.08 -1.03 9.94 22.39 0.22 -0.81 16 20 C 0.08 1.59 6.54 38.11 0.25 1.84 16 21 C 0.10 3.00 5.84 22.92 0.13 3.13 16 22 O -0.31 -10.59 9.43 -88.49 -0.83 -11.42 16 23 C 0.07 1.64 3.81 29.86 0.11 1.75 16 24 H 0.16 3.58 8.14 -2.39 -0.02 3.56 16 25 C -0.17 -3.38 9.30 71.98 0.67 -2.71 16 26 C 0.50 12.10 7.19 87.62 0.63 12.73 16 27 O -0.54 -15.47 17.95 -3.09 -0.06 -15.52 16 28 N -0.64 -11.91 5.48 -302.72 -1.66 -13.57 16 29 H 0.04 1.44 6.52 -2.39 -0.02 1.42 16 30 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.11 2.67 5.20 -2.38 -0.01 2.66 16 33 H 0.05 1.51 6.70 -2.39 -0.02 1.50 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.69 6.92 -2.39 -0.02 1.67 16 36 H 0.03 1.62 6.18 -2.38 -0.01 1.60 16 37 H -0.01 -0.71 7.35 -2.39 -0.02 -0.72 16 38 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.14 3.23 6.22 -2.91 -0.02 3.21 16 40 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 41 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 42 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.07 1.34 7.81 -2.39 -0.02 1.32 16 45 H 0.43 5.32 8.89 -92.71 -0.82 4.50 16 Total: -1.00 -84.02 368.30 3.37 -80.65 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.21 Total: 13.44 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 5.36 Total: 16.41 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -3.30 Total: -96.82 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -0.93 Total: -60.26 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -84.02 3.37 -80.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519099500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.314 kcal (2) G-P(sol) polarization free energy of solvation -84.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds