Wall clock time and date at job start Tue Mar 31 2020 18:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47498 * 2 1 4 4 C 1.50707 * 109.47142 * 239.99949 * 2 1 3 5 5 H 1.07998 * 119.99896 * 275.01211 * 4 2 1 6 6 C 1.37875 * 119.99620 * 95.00811 * 4 2 1 7 7 N 1.31520 * 119.99444 * 184.82858 * 6 4 2 8 8 Si 1.86797 * 120.00384 * 4.82728 * 6 4 2 9 9 H 1.48500 * 109.47264 * 84.66304 * 8 6 4 10 10 H 1.48502 * 109.46994 * 204.66363 * 8 6 4 11 11 H 1.48499 * 109.47218 * 324.66482 * 8 6 4 12 12 N 1.46497 * 109.47149 * 120.00172 * 2 1 3 13 13 C 1.34780 * 120.00134 * 275.27549 * 12 2 1 14 14 O 1.21523 * 119.99614 * 359.72376 * 13 12 2 15 15 C 1.48032 * 119.99945 * 179.72413 * 13 12 2 16 16 C 1.39556 * 120.00351 * 359.72205 * 15 13 12 17 17 C 1.37819 * 119.99568 * 179.71812 * 16 15 13 18 18 C 1.39550 * 120.00483 * 0.55713 * 17 16 15 19 19 C 1.48033 * 120.00057 * 179.74030 * 18 17 16 20 20 O 1.21530 * 119.99935 * 219.36410 * 19 18 17 21 21 N 1.34770 * 119.99960 * 39.36397 * 19 18 17 22 22 C 1.47151 * 120.98518 * 5.34196 * 21 19 18 23 23 C 1.53710 * 108.16105 * 129.43202 * 22 21 19 24 24 O 1.42961 * 109.14878 * 52.54267 * 23 22 21 25 25 C 1.42962 * 114.16695 * 297.28913 * 24 23 22 26 26 C 1.47157 * 120.98114 * 185.63024 * 21 19 18 27 27 C 1.39555 * 119.99728 * 359.72384 * 18 17 16 28 28 C 1.37814 * 120.00348 * 359.97438 * 27 18 17 29 29 H 1.08995 * 109.47610 * 175.07542 * 1 2 3 30 30 H 1.09001 * 109.47258 * 295.07988 * 1 2 3 31 31 H 1.08999 * 109.46943 * 55.07128 * 1 2 3 32 32 H 0.97001 * 119.99222 * 180.02562 * 7 6 4 33 33 H 0.97006 * 120.00215 * 94.99345 * 12 2 1 34 34 H 1.08001 * 119.99579 * 359.97438 * 16 15 13 35 35 H 1.08009 * 119.99465 * 180.30263 * 17 16 15 36 36 H 1.09000 * 109.68662 * 249.21402 * 22 21 19 37 37 H 1.09008 * 109.67845 * 9.76991 * 22 21 19 38 38 H 1.08994 * 109.66097 * 292.57739 * 23 22 21 39 39 H 1.09000 * 109.48453 * 172.40196 * 23 22 21 40 40 H 1.08997 * 109.51192 * 302.65757 * 25 24 23 41 41 H 1.08999 * 109.55376 * 182.52607 * 25 24 23 42 42 H 1.08999 * 109.68155 * 350.23157 * 26 21 19 43 43 H 1.09003 * 109.68368 * 110.78612 * 26 21 19 44 44 H 1.08004 * 119.99956 * 180.02562 * 27 18 17 45 45 H 1.08004 * 120.00348 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7077 -0.6132 -3.4617 8 14 2.3115 1.8790 -2.3180 9 1 3.5944 2.3964 -1.7780 10 1 2.1084 2.3984 -3.6943 11 1 1.1927 2.3264 -1.4500 12 7 2.0183 -0.6906 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8527 1.1594 2.4131 15 6 2.6294 -0.7191 3.5686 16 6 2.9558 -2.0746 3.5073 17 6 3.4153 -2.7242 4.6326 18 6 3.5432 -2.0295 5.8361 19 6 4.0313 -2.7287 7.0462 20 8 3.5352 -2.4875 8.1291 21 7 5.0259 -3.6328 6.9469 22 6 5.7209 -3.8572 5.6694 23 6 7.2341 -3.7740 5.9262 24 8 7.5770 -4.6555 6.9983 25 6 6.9678 -4.3220 8.2479 26 6 5.4446 -4.4292 8.1113 27 6 3.2112 -0.6754 5.8988 28 6 2.7576 -0.0242 4.7721 29 1 -0.3634 -1.0238 -0.0882 30 1 -0.3634 0.4356 0.9308 31 1 -0.3633 0.5884 -0.8425 32 1 2.9389 -0.1047 -4.2548 33 1 2.2489 -1.6319 1.1526 34 1 2.8522 -2.6134 2.5771 35 1 3.6726 -3.7720 4.5840 36 1 5.4653 -4.8429 5.2806 37 1 5.4265 -3.0913 4.9519 38 1 7.5050 -2.7528 6.1939 39 1 7.7725 -4.0694 5.0257 40 1 7.2376 -3.3026 8.5239 41 1 7.3137 -5.0115 9.0179 42 1 4.9672 -4.0422 9.0116 43 1 5.1617 -5.4715 7.9642 44 1 3.3106 -0.1376 6.8302 45 1 2.5011 1.0238 4.8206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528312324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:41 Heat of formation + Delta-G solvation = -78.808770 kcal Electronic energy + Delta-G solvation = -27990.079370 eV Core-core repulsion = 23972.945621 eV Total energy + Delta-G solvation = -4017.133749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04507 -39.77259 -38.75705 -37.75263 -35.26058 -35.01856 -32.68112 -32.32553 -31.48616 -31.02179 -29.55963 -28.28792 -25.42906 -25.10658 -24.47523 -22.74989 -22.59056 -21.09353 -20.09805 -19.64188 -18.23968 -17.86564 -17.06506 -16.55195 -16.36130 -16.07658 -15.84351 -15.57800 -15.18720 -14.98175 -14.90410 -14.45839 -14.30301 -14.07418 -13.78225 -13.59399 -13.28428 -12.96332 -12.70222 -12.64088 -12.56897 -12.33716 -12.16682 -11.87180 -11.54171 -11.33759 -11.17734 -11.15409 -10.88181 -10.65862 -10.64769 -10.25828 -9.94457 -9.40945 -9.28809 -9.22542 -9.15863 -8.97661 -8.77306 -8.20967 -6.30164 -4.34654 0.42462 1.13603 2.28088 2.39545 3.11577 3.21866 3.29969 3.33957 3.36833 3.76124 3.90142 4.01463 4.23319 4.26783 4.45513 4.55531 4.61283 4.67359 4.72530 4.75554 4.95646 5.01009 5.11314 5.12707 5.15122 5.23731 5.29543 5.30289 5.41457 5.49357 5.74149 5.88455 5.99039 6.09131 6.21684 6.29099 6.45704 6.57822 6.59879 6.60703 6.85092 6.85917 7.10633 7.27947 7.44298 7.70424 8.02957 8.44334 8.68504 8.80335 9.31325 10.81333 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.002534 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.808268 B =11045.883975 C =11902.431039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.230 3.770 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.694 5.694 13 C 0.538 3.462 14 O -0.550 6.550 15 C -0.095 4.095 16 C -0.093 4.093 17 C -0.100 4.100 18 C -0.121 4.121 19 C 0.566 3.434 20 O -0.531 6.531 21 N -0.613 5.613 22 C 0.061 3.939 23 C 0.046 3.954 24 O -0.379 6.379 25 C 0.048 3.952 26 C 0.077 3.923 27 C -0.073 4.073 28 C -0.070 4.070 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.054 0.946 32 H 0.269 0.731 33 H 0.393 0.607 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.779 -8.549 20.583 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.070 0.930 4 C -0.570 4.570 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.523 5.523 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.342 5.342 13 C 0.323 3.677 14 O -0.430 6.430 15 C -0.098 4.098 16 C -0.112 4.112 17 C -0.118 4.118 18 C -0.124 4.124 19 C 0.356 3.644 20 O -0.408 6.408 21 N -0.348 5.348 22 C -0.062 4.062 23 C -0.031 4.031 24 O -0.298 6.298 25 C -0.030 4.030 26 C -0.046 4.046 27 C -0.092 4.092 28 C -0.089 4.089 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.153 0.847 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.475 -7.721 20.918 23.517 hybrid contribution -0.050 0.582 -0.237 0.630 sum 7.424 -7.139 20.681 23.104 Atomic orbital electron populations 1.22223 0.98363 1.00713 0.99412 1.19194 0.91072 0.94407 0.82527 0.93031 1.20978 1.45520 0.95618 0.94891 0.90265 1.24938 0.93505 0.98693 0.95132 1.69880 1.44416 1.36270 1.01730 0.86897 0.79863 0.85739 0.77458 1.19784 1.21111 1.18438 1.46657 1.64006 1.13950 1.09575 1.18357 0.79021 0.86887 0.83454 1.90724 1.51511 1.15600 1.85174 1.20527 0.99966 0.94208 0.95127 1.21378 0.97176 0.93696 0.98918 1.21304 0.98977 1.00181 0.91354 1.19890 1.04003 0.95250 0.93301 1.18488 0.78872 0.78390 0.88674 1.90778 1.57493 1.64015 1.28538 1.48021 1.35733 1.39611 1.11411 1.22959 0.93124 1.03879 0.86203 1.23113 0.94024 0.94616 0.91384 1.87980 1.70063 1.53560 1.18149 1.22991 0.91526 1.01656 0.86790 1.22335 0.95849 0.96121 0.90260 1.21126 0.96549 0.92746 0.98793 1.21296 0.95837 1.01027 0.90692 0.93318 0.95138 0.92739 0.92147 0.77232 0.84361 0.84724 0.89865 0.87338 0.92343 0.87149 0.92505 0.87466 0.87885 0.90349 0.84676 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.46 37.16 0.35 -2.81 16 2 C 0.23 5.29 2.22 -69.08 -0.15 5.14 16 3 H 0.05 1.30 4.74 -51.93 -0.25 1.05 16 4 C -0.53 -13.77 9.05 -34.44 -0.31 -14.08 16 5 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -25.40 13.96 55.43 0.77 -24.62 16 8 Si 0.87 21.02 26.98 -169.99 -4.59 16.43 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.26 -6.17 6.83 56.52 0.39 -5.78 16 12 N -0.69 -13.34 5.02 -55.82 -0.28 -13.62 16 13 C 0.54 10.07 7.74 -12.24 -0.09 9.98 16 14 O -0.55 -12.23 16.00 5.35 0.09 -12.14 16 15 C -0.09 -1.37 5.88 -104.90 -0.62 -1.99 16 16 C -0.09 -1.06 9.53 -39.24 -0.37 -1.44 16 17 C -0.10 -0.98 7.39 -39.25 -0.29 -1.27 16 18 C -0.12 -1.35 5.16 -104.90 -0.54 -1.89 16 19 C 0.57 6.57 7.35 -12.25 -0.09 6.48 16 20 O -0.53 -7.79 16.38 5.34 0.09 -7.71 16 21 N -0.61 -5.49 3.01 -173.05 -0.52 -6.01 16 22 C 0.06 0.42 5.04 -3.32 -0.02 0.40 16 23 C 0.05 0.31 7.00 37.53 0.26 0.57 16 24 O -0.38 -3.08 10.74 -35.23 -0.38 -3.46 16 25 C 0.05 0.31 6.99 37.31 0.26 0.57 16 26 C 0.08 0.58 6.65 -3.53 -0.02 0.55 16 27 C -0.07 -0.86 9.61 -39.25 -0.38 -1.24 16 28 C -0.07 -0.92 9.58 -39.24 -0.38 -1.30 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.39 6.46 6.62 -40.82 -0.27 6.19 16 34 H 0.14 1.37 6.39 -52.49 -0.34 1.04 16 35 H 0.14 0.99 6.42 -52.48 -0.34 0.65 16 36 H 0.08 0.48 8.03 -51.93 -0.42 0.06 16 37 H 0.11 0.74 4.92 -51.92 -0.26 0.48 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.85 7.06 -51.93 -0.37 0.48 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.14 1.45 8.05 -52.48 -0.42 1.02 16 45 H 0.14 1.91 7.64 -52.48 -0.40 1.51 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -33.47 368.62 -7.76 -41.23 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.01 Total: 4.52 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.49 Total: -0.19 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.03 Total: -44.25 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.21 Total: -23.31 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.59 Total: 16.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.47 -7.76 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528312324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.575 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds