Wall clock time and date at job start Tue Mar 31 2020 18:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47498 * 2 1 4 4 C 1.50707 * 109.47142 * 239.99949 * 2 1 3 5 5 H 1.07998 * 119.99896 * 275.01211 * 4 2 1 6 6 C 1.37875 * 119.99620 * 95.00811 * 4 2 1 7 7 N 1.31520 * 119.99444 * 184.82858 * 6 4 2 8 8 Si 1.86797 * 120.00384 * 4.82728 * 6 4 2 9 9 H 1.48500 * 109.47264 * 84.66304 * 8 6 4 10 10 H 1.48502 * 109.46994 * 204.66363 * 8 6 4 11 11 H 1.48499 * 109.47218 * 324.66482 * 8 6 4 12 12 N 1.46497 * 109.47149 * 120.00172 * 2 1 3 13 13 C 1.34780 * 120.00134 * 275.27549 * 12 2 1 14 14 O 1.21523 * 119.99614 * 359.72376 * 13 12 2 15 15 C 1.48032 * 119.99945 * 179.72413 * 13 12 2 16 16 C 1.39556 * 120.00351 * 359.72205 * 15 13 12 17 17 C 1.37819 * 119.99568 * 179.71812 * 16 15 13 18 18 C 1.39550 * 120.00483 * 0.55713 * 17 16 15 19 19 C 1.48033 * 120.00057 * 179.74030 * 18 17 16 20 20 O 1.21530 * 119.99935 * 219.36410 * 19 18 17 21 21 N 1.34770 * 119.99960 * 39.36397 * 19 18 17 22 22 C 1.47151 * 120.98518 * 5.34196 * 21 19 18 23 23 C 1.53710 * 108.16105 * 129.43202 * 22 21 19 24 24 O 1.42961 * 109.14878 * 52.54267 * 23 22 21 25 25 C 1.42962 * 114.16695 * 297.28913 * 24 23 22 26 26 C 1.47157 * 120.98114 * 185.63024 * 21 19 18 27 27 C 1.39555 * 119.99728 * 359.72384 * 18 17 16 28 28 C 1.37814 * 120.00348 * 359.97438 * 27 18 17 29 29 H 1.08995 * 109.47610 * 175.07542 * 1 2 3 30 30 H 1.09001 * 109.47258 * 295.07988 * 1 2 3 31 31 H 1.08999 * 109.46943 * 55.07128 * 1 2 3 32 32 H 0.97001 * 119.99222 * 180.02562 * 7 6 4 33 33 H 0.97006 * 120.00215 * 94.99345 * 12 2 1 34 34 H 1.08001 * 119.99579 * 359.97438 * 16 15 13 35 35 H 1.08009 * 119.99465 * 180.30263 * 17 16 15 36 36 H 1.09000 * 109.68662 * 249.21402 * 22 21 19 37 37 H 1.09008 * 109.67845 * 9.76991 * 22 21 19 38 38 H 1.08994 * 109.66097 * 292.57739 * 23 22 21 39 39 H 1.09000 * 109.48453 * 172.40196 * 23 22 21 40 40 H 1.08997 * 109.51192 * 302.65757 * 25 24 23 41 41 H 1.08999 * 109.55376 * 182.52607 * 25 24 23 42 42 H 1.08999 * 109.68155 * 350.23157 * 26 21 19 43 43 H 1.09003 * 109.68368 * 110.78612 * 26 21 19 44 44 H 1.08004 * 119.99956 * 180.02562 * 27 18 17 45 45 H 1.08004 * 120.00348 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7077 -0.6132 -3.4617 8 14 2.3115 1.8790 -2.3180 9 1 3.5944 2.3964 -1.7780 10 1 2.1084 2.3984 -3.6943 11 1 1.1927 2.3264 -1.4500 12 7 2.0183 -0.6906 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8527 1.1594 2.4131 15 6 2.6294 -0.7191 3.5686 16 6 2.9558 -2.0746 3.5073 17 6 3.4153 -2.7242 4.6326 18 6 3.5432 -2.0295 5.8361 19 6 4.0313 -2.7287 7.0462 20 8 3.5352 -2.4875 8.1291 21 7 5.0259 -3.6328 6.9469 22 6 5.7209 -3.8572 5.6694 23 6 7.2341 -3.7740 5.9262 24 8 7.5770 -4.6555 6.9983 25 6 6.9678 -4.3220 8.2479 26 6 5.4446 -4.4292 8.1113 27 6 3.2112 -0.6754 5.8988 28 6 2.7576 -0.0242 4.7721 29 1 -0.3634 -1.0238 -0.0882 30 1 -0.3634 0.4356 0.9308 31 1 -0.3633 0.5884 -0.8425 32 1 2.9389 -0.1047 -4.2548 33 1 2.2489 -1.6319 1.1526 34 1 2.8522 -2.6134 2.5771 35 1 3.6726 -3.7720 4.5840 36 1 5.4653 -4.8429 5.2806 37 1 5.4265 -3.0913 4.9519 38 1 7.5050 -2.7528 6.1939 39 1 7.7725 -4.0694 5.0257 40 1 7.2376 -3.3026 8.5239 41 1 7.3137 -5.0115 9.0179 42 1 4.9672 -4.0422 9.0116 43 1 5.1617 -5.4715 7.9642 44 1 3.3106 -0.1376 6.8302 45 1 2.5011 1.0238 4.8206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528312324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:40 Heat of formation + Delta-G solvation = -102.128763 kcal Electronic energy + Delta-G solvation = -27991.090601 eV Core-core repulsion = 23972.945621 eV Total energy + Delta-G solvation = -4018.144980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89011 -40.98393 -39.62435 -38.82575 -36.78393 -35.97810 -34.48168 -33.26977 -32.59378 -31.83822 -31.05952 -28.99844 -27.34070 -26.08077 -25.17808 -23.70729 -23.48424 -22.46084 -21.40850 -20.68521 -19.71923 -18.77346 -18.24741 -17.76793 -17.34708 -17.02637 -16.75298 -16.48780 -16.13185 -16.01942 -15.89505 -15.79033 -15.46952 -15.26582 -14.84878 -14.64221 -14.48025 -14.37926 -14.29203 -13.78326 -13.60802 -13.38506 -13.19608 -13.03824 -12.81900 -12.80000 -12.46097 -12.39447 -12.21631 -11.88329 -11.79368 -11.30946 -11.24045 -11.15163 -10.93879 -10.81368 -10.24045 -10.09205 -9.84277 -9.67424 -8.38924 -6.45102 -0.59536 0.22454 1.29236 1.32169 1.35175 1.44841 1.65206 1.96973 2.26992 2.31098 2.74226 2.85187 3.02682 3.20384 3.65408 3.71529 3.78177 3.80898 3.95776 4.08328 4.15663 4.20176 4.22048 4.29319 4.43205 4.45590 4.57975 4.63643 4.71834 4.73239 4.81181 4.82361 4.85868 4.89995 5.02480 5.08026 5.11138 5.24697 5.29691 5.35999 5.44485 5.62097 5.68693 6.08331 6.09639 6.11305 6.59656 6.81377 6.86047 7.19721 7.34911 8.75627 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.002534 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.808268 B =11045.883975 C =11902.431039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.233 3.767 3 H 0.031 0.969 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.036 3.964 7 N -0.927 5.927 8 Si 0.922 3.078 9 H -0.274 1.274 10 H -0.278 1.278 11 H -0.257 1.257 12 N -0.692 5.692 13 C 0.539 3.461 14 O -0.591 6.591 15 C -0.114 4.114 16 C -0.083 4.083 17 C -0.082 4.082 18 C -0.117 4.117 19 C 0.564 3.436 20 O -0.569 6.569 21 N -0.607 5.607 22 C 0.058 3.942 23 C 0.044 3.956 24 O -0.393 6.393 25 C 0.050 3.950 26 C 0.074 3.926 27 C -0.074 4.074 28 C -0.073 4.073 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.271 0.729 33 H 0.407 0.593 34 H 0.156 0.844 35 H 0.168 0.832 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.129 0.871 40 H 0.051 0.949 41 H 0.129 0.871 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.142 0.858 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.487 -10.072 21.692 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.129 3.871 3 H 0.049 0.951 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.165 4.165 7 N -0.565 5.565 8 Si 0.747 3.253 9 H -0.200 1.200 10 H -0.204 1.204 11 H -0.181 1.181 12 N -0.341 5.341 13 C 0.327 3.673 14 O -0.473 6.473 15 C -0.117 4.117 16 C -0.102 4.102 17 C -0.101 4.101 18 C -0.120 4.120 19 C 0.354 3.646 20 O -0.449 6.449 21 N -0.340 5.340 22 C -0.064 4.064 23 C -0.033 4.033 24 O -0.311 6.311 25 C -0.027 4.027 26 C -0.048 4.048 27 C -0.093 4.093 28 C -0.092 4.092 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.244 0.756 34 H 0.174 0.826 35 H 0.186 0.814 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.071 0.929 39 H 0.147 0.853 40 H 0.070 0.930 41 H 0.147 0.853 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.160 0.840 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.213 -9.287 22.031 25.279 hybrid contribution -0.205 0.939 -0.463 1.067 sum 8.008 -8.349 21.568 24.474 Atomic orbital electron populations 1.22127 0.96999 1.01487 0.99527 1.18948 0.92064 0.93221 0.82868 0.95103 1.21149 1.44350 0.94980 0.95812 0.91949 1.25554 0.93767 1.02100 0.95054 1.69967 1.46431 1.37662 1.02461 0.86122 0.79709 0.81781 0.77648 1.19955 1.20363 1.18139 1.46333 1.64315 1.14585 1.08894 1.18881 0.77855 0.86436 0.84162 1.90696 1.53219 1.17506 1.85903 1.20196 1.02630 0.95480 0.93440 1.21530 0.96086 0.92326 1.00209 1.21555 0.97200 1.01394 0.89908 1.20029 1.03147 0.95003 0.93816 1.18520 0.79289 0.78728 0.88097 1.90767 1.59041 1.65417 1.29690 1.48133 1.34656 1.38510 1.12732 1.23161 0.93084 1.04996 0.85182 1.23227 0.93986 0.94323 0.91811 1.87970 1.70355 1.54024 1.18761 1.23064 0.90671 1.02054 0.86910 1.22468 0.96462 0.96434 0.89416 1.21162 0.96391 0.93272 0.98483 1.21231 0.96276 1.00823 0.90880 0.92089 0.94516 0.93240 0.91989 0.75573 0.82615 0.81448 0.87853 0.87101 0.92862 0.85318 0.93050 0.85332 0.88881 0.88940 0.84025 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 9.46 71.98 0.68 -5.27 16 2 C 0.23 10.59 2.22 44.25 0.10 10.68 16 3 H 0.03 1.55 4.74 -2.39 -0.01 1.54 16 4 C -0.52 -27.08 9.05 25.60 0.23 -26.85 16 5 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 6 C 0.04 1.97 5.47 84.65 0.46 2.43 16 7 N -0.93 -53.45 13.96 21.45 0.30 -53.15 16 8 Si 0.92 43.39 26.98 68.60 1.85 45.24 16 9 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.26 -11.87 6.83 99.48 0.68 -11.19 16 12 N -0.69 -25.98 5.02 -448.80 -2.25 -28.23 16 13 C 0.54 19.91 7.74 86.84 0.67 20.59 16 14 O -0.59 -26.44 16.00 -3.79 -0.06 -26.50 16 15 C -0.11 -3.16 5.88 -20.04 -0.12 -3.28 16 16 C -0.08 -1.67 9.53 22.49 0.21 -1.46 16 17 C -0.08 -1.34 7.39 22.49 0.17 -1.17 16 18 C -0.12 -2.35 5.16 -20.04 -0.10 -2.45 16 19 C 0.56 12.05 7.35 86.84 0.64 12.69 16 20 O -0.57 -16.21 16.38 -3.81 -0.06 -16.27 16 21 N -0.61 -9.36 3.01 -819.71 -2.47 -11.83 16 22 C 0.06 0.59 5.04 86.49 0.44 1.03 16 23 C 0.04 0.46 7.00 72.22 0.51 0.96 16 24 O -0.39 -5.35 10.74 -148.98 -1.60 -6.95 16 25 C 0.05 0.54 6.99 72.08 0.50 1.05 16 26 C 0.07 0.95 6.65 86.35 0.57 1.53 16 27 C -0.07 -1.66 9.61 22.49 0.22 -1.45 16 28 C -0.07 -1.89 9.58 22.49 0.22 -1.68 16 29 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.41 12.76 6.62 -92.70 -0.61 12.15 16 34 H 0.16 2.57 6.39 -2.91 -0.02 2.55 16 35 H 0.17 1.66 6.42 -2.91 -0.02 1.64 16 36 H 0.10 0.73 8.03 -2.39 -0.02 0.71 16 37 H 0.11 1.10 4.92 -2.38 -0.01 1.09 16 38 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.09 1.42 7.06 -2.39 -0.02 1.40 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.14 2.95 8.05 -2.91 -0.02 2.92 16 45 H 0.14 3.67 7.64 -2.91 -0.02 3.65 16 Total: -1.00 -72.55 368.62 1.49 -71.06 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.39 Total: 19.27 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 5.39 Total: 7.36 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -4.42 Total: -93.21 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -1.72 Total: -49.72 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.85 Total: 45.24 kcal Total: -72.55 1.49 -71.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528312324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.069 kcal (2) G-P(sol) polarization free energy of solvation -72.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds