Wall clock time and date at job start Tue Mar 31 2020 18:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46857 * 2 1 4 4 C 1.50697 * 109.46938 * 119.99698 * 2 1 3 5 5 H 1.08000 * 120.00346 * 120.00143 * 4 2 1 6 6 C 1.37883 * 119.99764 * 300.00013 * 4 2 1 7 7 N 1.31513 * 120.00196 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99590 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47558 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47179 * 119.99943 * 8 6 4 11 11 H 1.48507 * 109.46671 * 239.99949 * 8 6 4 12 12 N 1.46498 * 109.47029 * 239.99601 * 2 1 3 13 13 C 1.34777 * 120.00080 * 85.00021 * 12 2 1 14 14 O 1.21527 * 119.99693 * 0.02562 * 13 12 2 15 15 C 1.48038 * 119.99743 * 179.97438 * 13 12 2 16 16 C 1.39554 * 119.99424 * 180.02562 * 15 13 12 17 17 C 1.37817 * 119.99811 * 179.97438 * 16 15 13 18 18 C 1.39558 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.48038 * 119.99704 * 179.97438 * 18 17 16 20 20 O 1.21523 * 120.00236 * 39.12899 * 19 18 17 21 21 N 1.34779 * 119.99957 * 219.11779 * 19 18 17 22 22 C 1.47156 * 120.98170 * 5.51735 * 21 19 18 23 23 C 1.53711 * 108.16194 * 129.42805 * 22 21 19 24 24 O 1.42961 * 109.14989 * 52.53623 * 23 22 21 25 25 C 1.42965 * 114.16539 * 297.29001 * 24 23 22 26 26 C 1.47155 * 120.98323 * 185.79139 * 21 19 18 27 27 C 1.39551 * 120.00343 * 0.02562 * 18 17 16 28 28 C 1.37817 * 119.99866 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47066 * 60.00715 * 1 2 3 30 30 H 1.09003 * 109.46782 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47331 * 300.00179 * 1 2 3 32 32 H 0.96996 * 119.99982 * 180.02562 * 7 6 4 33 33 H 0.97006 * 119.99840 * 265.00275 * 12 2 1 34 34 H 1.08005 * 120.00346 * 0.24922 * 16 15 13 35 35 H 1.08001 * 120.00565 * 179.97438 * 17 16 15 36 36 H 1.08997 * 109.67568 * 249.20336 * 22 21 19 37 37 H 1.08992 * 109.67999 * 9.75706 * 22 21 19 38 38 H 1.08999 * 109.65327 * 292.56879 * 23 22 21 39 39 H 1.08997 * 109.48565 * 172.39792 * 23 22 21 40 40 H 1.09003 * 109.50832 * 302.65250 * 25 24 23 41 41 H 1.09003 * 109.55465 * 182.53273 * 25 24 23 42 42 H 1.09004 * 109.68012 * 350.23693 * 26 21 19 43 43 H 1.09000 * 109.67950 * 110.79226 * 26 21 19 44 44 H 1.08000 * 120.00366 * 179.97438 * 27 18 17 45 45 H 1.08004 * 120.00447 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.1473 -2.2861 3.6040 10 1 3.1472 -0.1855 4.8161 11 1 1.1676 -1.5863 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8585 1.1608 -2.4116 15 6 2.6411 -0.7163 -3.5656 16 6 2.7748 -0.0200 -4.7676 17 6 3.2352 -0.6695 -5.8926 18 6 3.5671 -2.0236 -5.8298 19 6 4.0611 -2.7214 -7.0384 20 8 4.8206 -2.1549 -7.7993 21 7 3.6686 -3.9850 -7.2947 22 6 2.6583 -4.6493 -6.4559 23 6 1.5805 -5.2384 -7.3799 24 8 2.2088 -6.0476 -8.3770 25 6 3.0908 -5.3296 -9.2432 26 6 4.2419 -4.7433 -8.4180 27 6 3.4323 -2.7201 -4.6281 28 6 2.9719 -2.0706 -3.5031 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7087 1.1615 3.4843 33 1 2.2490 -1.6319 -1.1525 34 1 2.5218 1.0289 -4.8152 35 1 3.3384 -0.1309 -6.8230 36 1 3.1270 -5.4466 -5.8790 37 1 2.2072 -3.9229 -5.7800 38 1 1.0288 -4.4308 -7.8610 39 1 0.8940 -5.8498 -6.7943 40 1 2.5445 -4.5223 -9.7311 41 1 3.4916 -6.0061 -9.9980 42 1 4.8398 -4.0790 -9.0421 43 1 4.8673 -5.5498 -8.0352 44 1 3.6888 -3.7681 -4.5796 45 1 2.8672 -2.6097 -2.5731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528312326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:45 Heat of formation + Delta-G solvation = -78.378289 kcal Electronic energy + Delta-G solvation = -27900.788831 eV Core-core repulsion = 23883.673749 eV Total energy + Delta-G solvation = -4017.115082 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.03183 -39.70291 -38.72089 -37.68156 -35.25398 -34.91903 -32.71913 -32.31441 -31.29915 -30.99648 -28.92908 -28.21768 -25.35217 -25.07846 -24.46211 -22.71835 -22.58290 -21.17682 -20.07766 -19.54521 -18.16830 -17.79617 -17.03629 -16.44523 -16.10548 -16.02157 -15.78892 -15.50574 -15.16185 -14.95168 -14.85836 -14.37959 -14.35317 -14.07287 -13.76300 -13.56198 -13.27478 -12.95095 -12.67330 -12.49651 -12.42864 -12.17294 -11.87929 -11.74495 -11.31954 -11.16185 -11.14787 -11.01918 -10.81928 -10.66122 -10.37420 -10.29941 -10.23465 -9.28845 -9.20211 -9.13803 -9.10122 -8.95717 -8.62111 -8.02373 -6.18134 -4.27859 0.46426 1.16524 2.30413 2.40599 3.17693 3.20146 3.28093 3.30301 3.32852 3.86334 3.98603 4.03487 4.22487 4.31381 4.45412 4.54877 4.63182 4.69338 4.72099 4.75541 4.98142 5.08926 5.12116 5.14505 5.17889 5.22813 5.29000 5.33576 5.41014 5.52766 5.77064 5.89427 6.02535 6.12459 6.28539 6.58574 6.60938 6.76042 6.86147 6.88978 7.07176 7.33692 7.47184 7.62157 7.71822 7.83801 8.07839 8.52946 8.69446 8.96779 9.39648 10.87905 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002361 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.895315 B =11854.576580 C =12494.657544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.698 5.698 13 C 0.537 3.463 14 O -0.545 6.545 15 C -0.093 4.093 16 C -0.070 4.070 17 C -0.073 4.073 18 C -0.123 4.123 19 C 0.567 3.433 20 O -0.531 6.531 21 N -0.614 5.614 22 C 0.061 3.939 23 C 0.046 3.954 24 O -0.380 6.380 25 C 0.048 3.952 26 C 0.077 3.923 27 C -0.100 4.100 28 C -0.095 4.095 29 H 0.015 0.985 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 -13.899 -20.380 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.346 5.346 13 C 0.322 3.678 14 O -0.425 6.425 15 C -0.096 4.096 16 C -0.089 4.089 17 C -0.091 4.091 18 C -0.126 4.126 19 C 0.356 3.644 20 O -0.408 6.408 21 N -0.348 5.348 22 C -0.061 4.061 23 C -0.031 4.031 24 O -0.298 6.298 25 C -0.030 4.030 26 C -0.046 4.046 27 C -0.118 4.118 28 C -0.114 4.114 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.096 0.904 44 H 0.152 0.848 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.754 -12.821 -20.646 24.458 hybrid contribution 0.481 -0.708 1.032 1.341 sum 3.235 -13.528 -19.614 24.045 Atomic orbital electron populations 1.22084 0.98219 0.99228 1.01060 1.18824 0.91179 0.94094 0.79747 0.93137 1.21223 1.32574 1.13313 0.90228 0.91986 1.24893 0.94754 0.94944 0.99105 1.69905 1.35746 1.22397 1.23891 0.86380 0.78617 0.79520 0.82501 1.19717 1.20836 1.20838 1.46527 1.64140 1.13575 1.10366 1.18260 0.79264 0.86888 0.83392 1.90738 1.51258 1.15506 1.84978 1.20586 0.99610 0.94173 0.95238 1.21307 0.95909 1.01001 0.90680 1.21132 0.96471 0.92417 0.99130 1.19876 1.04043 0.95056 0.93650 1.18498 0.80359 0.80457 0.85080 1.90777 1.35926 1.65410 1.48655 1.48018 1.41970 1.13511 1.31335 1.22951 0.90210 0.98682 0.94292 1.23111 0.94154 0.95740 0.90126 1.87978 1.60914 1.35423 1.45474 1.22993 0.90656 0.97029 0.92276 1.22329 0.96671 0.96460 0.89103 1.21288 0.98815 0.99946 0.91798 1.21360 0.97598 0.93761 0.98651 0.96553 0.95375 0.88997 0.92541 0.77790 0.83802 0.84682 0.89932 0.87344 0.92343 0.87223 0.92489 0.87468 0.87870 0.90373 0.84810 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.50 2.56 -69.08 -0.18 6.33 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -13.75 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.34 11.32 55.43 0.63 -23.71 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.70 -13.99 5.02 -55.82 -0.28 -14.27 16 13 C 0.54 10.51 7.74 -12.24 -0.09 10.42 16 14 O -0.55 -12.77 16.00 5.34 0.09 -12.69 16 15 C -0.09 -1.38 5.88 -104.90 -0.62 -2.00 16 16 C -0.07 -0.96 9.58 -39.25 -0.38 -1.33 16 17 C -0.07 -0.88 9.61 -39.24 -0.38 -1.25 16 18 C -0.12 -1.40 5.17 -104.90 -0.54 -1.94 16 19 C 0.57 6.64 7.35 -12.24 -0.09 6.55 16 20 O -0.53 -7.88 16.38 5.35 0.09 -7.79 16 21 N -0.61 -5.48 3.01 -173.06 -0.52 -6.00 16 22 C 0.06 0.41 5.03 -3.31 -0.02 0.39 16 23 C 0.05 0.29 7.00 37.53 0.26 0.56 16 24 O -0.38 -3.01 10.74 -35.23 -0.38 -3.39 16 25 C 0.05 0.31 6.98 37.31 0.26 0.57 16 26 C 0.08 0.57 6.65 -3.53 -0.02 0.55 16 27 C -0.10 -1.00 7.39 -39.25 -0.29 -1.29 16 28 C -0.09 -1.11 9.53 -39.24 -0.37 -1.48 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.39 6.54 6.56 -40.82 -0.27 6.27 16 34 H 0.14 1.99 7.64 -52.48 -0.40 1.59 16 35 H 0.14 1.48 8.05 -52.49 -0.42 1.06 16 36 H 0.08 0.46 8.02 -51.93 -0.42 0.04 16 37 H 0.11 0.71 4.92 -51.93 -0.26 0.46 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.85 7.06 -51.93 -0.37 0.48 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.13 0.99 6.40 -52.49 -0.34 0.66 16 45 H 0.14 1.38 6.39 -52.48 -0.34 1.04 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -32.98 368.82 -8.36 -41.34 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.01 Total: 5.36 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.51 Total: 0.46 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.17 Total: -43.98 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.21 Total: -23.87 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.98 -8.36 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528312326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.038 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds