Wall clock time and date at job start Tue Mar 31 2020 18:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46857 * 2 1 4 4 C 1.50697 * 109.46938 * 119.99698 * 2 1 3 5 5 H 1.08000 * 120.00346 * 120.00143 * 4 2 1 6 6 C 1.37883 * 119.99764 * 300.00013 * 4 2 1 7 7 N 1.31513 * 120.00196 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99590 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47558 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47179 * 119.99943 * 8 6 4 11 11 H 1.48507 * 109.46671 * 239.99949 * 8 6 4 12 12 N 1.46498 * 109.47029 * 239.99601 * 2 1 3 13 13 C 1.34777 * 120.00080 * 85.00021 * 12 2 1 14 14 O 1.21527 * 119.99693 * 0.02562 * 13 12 2 15 15 C 1.48038 * 119.99743 * 179.97438 * 13 12 2 16 16 C 1.39554 * 119.99424 * 180.02562 * 15 13 12 17 17 C 1.37817 * 119.99811 * 179.97438 * 16 15 13 18 18 C 1.39558 * 119.99790 * 0.02562 * 17 16 15 19 19 C 1.48038 * 119.99704 * 179.97438 * 18 17 16 20 20 O 1.21523 * 120.00236 * 39.12899 * 19 18 17 21 21 N 1.34779 * 119.99957 * 219.11779 * 19 18 17 22 22 C 1.47156 * 120.98170 * 5.51735 * 21 19 18 23 23 C 1.53711 * 108.16194 * 129.42805 * 22 21 19 24 24 O 1.42961 * 109.14989 * 52.53623 * 23 22 21 25 25 C 1.42965 * 114.16539 * 297.29001 * 24 23 22 26 26 C 1.47155 * 120.98323 * 185.79139 * 21 19 18 27 27 C 1.39551 * 120.00343 * 0.02562 * 18 17 16 28 28 C 1.37817 * 119.99866 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.47066 * 60.00715 * 1 2 3 30 30 H 1.09003 * 109.46782 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47331 * 300.00179 * 1 2 3 32 32 H 0.96996 * 119.99982 * 180.02562 * 7 6 4 33 33 H 0.97006 * 119.99840 * 265.00275 * 12 2 1 34 34 H 1.08005 * 120.00346 * 0.24922 * 16 15 13 35 35 H 1.08001 * 120.00565 * 179.97438 * 17 16 15 36 36 H 1.08997 * 109.67568 * 249.20336 * 22 21 19 37 37 H 1.08992 * 109.67999 * 9.75706 * 22 21 19 38 38 H 1.08999 * 109.65327 * 292.56879 * 23 22 21 39 39 H 1.08997 * 109.48565 * 172.39792 * 23 22 21 40 40 H 1.09003 * 109.50832 * 302.65250 * 25 24 23 41 41 H 1.09003 * 109.55465 * 182.53273 * 25 24 23 42 42 H 1.09004 * 109.68012 * 350.23693 * 26 21 19 43 43 H 1.09000 * 109.67950 * 110.79226 * 26 21 19 44 44 H 1.08000 * 120.00366 * 179.97438 * 27 18 17 45 45 H 1.08004 * 120.00447 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.1473 -2.2861 3.6040 10 1 3.1472 -0.1855 4.8161 11 1 1.1676 -1.5863 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8585 1.1608 -2.4116 15 6 2.6411 -0.7163 -3.5656 16 6 2.7748 -0.0200 -4.7676 17 6 3.2352 -0.6695 -5.8926 18 6 3.5671 -2.0236 -5.8298 19 6 4.0611 -2.7214 -7.0384 20 8 4.8206 -2.1549 -7.7993 21 7 3.6686 -3.9850 -7.2947 22 6 2.6583 -4.6493 -6.4559 23 6 1.5805 -5.2384 -7.3799 24 8 2.2088 -6.0476 -8.3770 25 6 3.0908 -5.3296 -9.2432 26 6 4.2419 -4.7433 -8.4180 27 6 3.4323 -2.7201 -4.6281 28 6 2.9719 -2.0706 -3.5031 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.7087 1.1615 3.4843 33 1 2.2490 -1.6319 -1.1525 34 1 2.5218 1.0289 -4.8152 35 1 3.3384 -0.1309 -6.8230 36 1 3.1270 -5.4466 -5.8790 37 1 2.2072 -3.9229 -5.7800 38 1 1.0288 -4.4308 -7.8610 39 1 0.8940 -5.8498 -6.7943 40 1 2.5445 -4.5223 -9.7311 41 1 3.4916 -6.0061 -9.9980 42 1 4.8398 -4.0790 -9.0421 43 1 4.8673 -5.5498 -8.0352 44 1 3.6888 -3.7681 -4.5796 45 1 2.8672 -2.6097 -2.5731 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528312326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:44 Heat of formation + Delta-G solvation = -100.992268 kcal Electronic energy + Delta-G solvation = -27901.769446 eV Core-core repulsion = 23883.673749 eV Total energy + Delta-G solvation = -4018.095698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.88239 -40.94660 -39.60502 -38.80877 -36.77652 -35.97169 -34.47267 -33.17349 -32.42482 -31.82607 -30.59115 -28.97591 -27.34629 -26.06223 -25.17158 -23.73314 -23.50797 -22.59664 -21.35265 -20.67426 -19.55068 -18.72531 -17.88387 -17.73296 -17.29271 -17.01116 -16.73822 -16.50541 -16.12895 -16.01968 -15.90376 -15.78578 -15.43148 -15.26062 -14.84332 -14.60066 -14.36601 -14.35435 -13.88215 -13.67181 -13.55984 -13.29710 -12.98705 -12.89367 -12.79920 -12.73654 -12.39004 -12.28316 -12.20502 -12.11010 -11.78651 -11.30126 -11.13786 -11.10298 -10.88360 -10.60709 -10.22713 -10.08876 -9.79211 -9.65999 -8.17345 -6.34892 -0.58790 0.22549 1.32812 1.46006 1.47384 1.59003 1.66018 1.99172 2.30173 2.52400 2.75484 2.86102 3.13822 3.21141 3.66078 3.72217 3.79509 3.82478 3.96637 4.09291 4.16449 4.20794 4.23109 4.30008 4.46194 4.56154 4.64514 4.74118 4.74870 4.83204 4.85959 4.90962 4.92144 5.04177 5.08427 5.10471 5.24658 5.30632 5.42999 5.56824 5.62508 5.68896 5.89122 6.08801 6.09079 6.10478 6.72029 6.86810 6.87348 7.30111 7.46134 8.89292 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018877 B = 0.002361 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.895315 B =11854.576580 C =12494.657544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.257 1.257 10 H -0.287 1.287 11 H -0.279 1.279 12 N -0.693 5.693 13 C 0.536 3.464 14 O -0.594 6.594 15 C -0.113 4.113 16 C -0.075 4.075 17 C -0.074 4.074 18 C -0.117 4.117 19 C 0.564 3.436 20 O -0.570 6.570 21 N -0.607 5.607 22 C 0.057 3.943 23 C 0.044 3.956 24 O -0.393 6.393 25 C 0.051 3.949 26 C 0.074 3.926 27 C -0.081 4.081 28 C -0.082 4.082 29 H 0.012 0.988 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.407 0.593 34 H 0.132 0.868 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.053 0.947 39 H 0.131 0.869 40 H 0.051 0.949 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.171 0.829 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -17.753 -20.681 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.180 1.180 10 H -0.213 1.213 11 H -0.205 1.205 12 N -0.342 5.342 13 C 0.324 3.676 14 O -0.477 6.477 15 C -0.116 4.116 16 C -0.095 4.095 17 C -0.092 4.092 18 C -0.120 4.120 19 C 0.354 3.646 20 O -0.450 6.450 21 N -0.340 5.340 22 C -0.065 4.065 23 C -0.033 4.033 24 O -0.311 6.311 25 C -0.027 4.027 26 C -0.048 4.048 27 C -0.099 4.099 28 C -0.101 4.101 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.244 0.756 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.069 0.931 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.188 0.812 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.503 -16.751 -20.968 27.065 hybrid contribution 0.246 0.455 0.998 1.124 sum 3.749 -16.297 -19.970 26.047 Atomic orbital electron populations 1.21906 0.98002 0.99766 0.99646 1.18422 0.91345 0.91990 0.81695 0.98337 1.21555 1.32569 1.13627 0.90523 0.90470 1.25812 0.94870 0.95580 1.02391 1.70059 1.36991 1.23967 1.24584 0.85281 0.78069 0.78545 0.78334 1.18048 1.21285 1.20460 1.46206 1.64281 1.14313 1.09364 1.18926 0.77972 0.86411 0.84327 1.90707 1.53285 1.17870 1.85857 1.20202 1.02494 0.95636 0.93264 1.21217 0.96538 1.00666 0.91036 1.21151 0.96356 0.93035 0.98704 1.20030 1.02909 0.94749 0.94354 1.18511 0.80113 0.81219 0.84773 1.90767 1.37896 1.66517 1.49794 1.48130 1.41601 1.12667 1.31627 1.23178 0.89886 0.99101 0.94289 1.23236 0.94191 0.95910 0.90001 1.87968 1.61117 1.36126 1.45901 1.23057 0.90034 0.97294 0.92276 1.22465 0.97194 0.96344 0.88790 1.21566 0.96865 1.01280 0.90172 1.21529 0.96326 0.92122 1.00100 0.96923 0.93647 0.91414 0.92557 0.75639 0.85054 0.84072 0.87775 0.87023 0.92902 0.85167 0.93073 0.85359 0.88979 0.88919 0.81191 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.26 71.98 0.67 -5.98 16 2 C 0.27 13.61 2.56 44.25 0.11 13.72 16 3 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 4 C -0.54 -27.81 8.73 25.60 0.22 -27.59 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -51.74 11.32 21.45 0.24 -51.50 16 8 Si 0.97 40.77 29.54 68.60 2.03 42.80 16 9 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 12 N -0.69 -27.67 5.02 -448.80 -2.25 -29.92 16 13 C 0.54 21.39 7.74 86.84 0.67 22.07 16 14 O -0.59 -29.34 16.00 -3.80 -0.06 -29.41 16 15 C -0.11 -3.29 5.88 -20.04 -0.12 -3.41 16 16 C -0.08 -2.08 9.58 22.49 0.22 -1.87 16 17 C -0.07 -1.72 9.61 22.49 0.22 -1.50 16 18 C -0.12 -2.40 5.17 -20.04 -0.10 -2.51 16 19 C 0.56 12.14 7.35 86.84 0.64 12.78 16 20 O -0.57 -16.46 16.38 -3.79 -0.06 -16.52 16 21 N -0.61 -9.20 3.01 -819.73 -2.47 -11.67 16 22 C 0.06 0.54 5.03 86.49 0.44 0.98 16 23 C 0.04 0.42 7.00 72.22 0.51 0.92 16 24 O -0.39 -5.08 10.74 -148.98 -1.60 -6.68 16 25 C 0.05 0.53 6.98 72.08 0.50 1.03 16 26 C 0.07 0.94 6.65 86.35 0.57 1.51 16 27 C -0.08 -1.31 7.39 22.49 0.17 -1.14 16 28 C -0.08 -1.68 9.53 22.49 0.21 -1.47 16 29 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 32 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.41 12.96 6.56 -92.70 -0.61 12.35 16 34 H 0.13 3.88 7.64 -2.91 -0.02 3.86 16 35 H 0.14 3.08 8.05 -2.91 -0.02 3.06 16 36 H 0.10 0.63 8.02 -2.39 -0.02 0.61 16 37 H 0.11 1.00 4.92 -2.39 -0.01 0.99 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 1.41 7.06 -2.39 -0.02 1.39 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.17 1.59 6.40 -2.91 -0.02 1.57 16 45 H 0.16 2.55 6.39 -2.91 -0.02 2.53 16 Total: -1.00 -74.35 368.82 1.62 -72.74 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.42 Total: 21.44 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.37 Total: 8.72 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -4.48 Total: -93.09 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -1.72 Total: -52.60 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -74.35 1.62 -72.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528312326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.253 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds