Wall clock time and date at job start Tue Mar 31 2020 18:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47142 * 2 1 4 4 C 1.50697 * 109.47417 * 120.00337 * 2 1 3 5 5 H 1.07999 * 120.00125 * 115.49715 * 4 2 1 6 6 C 1.37877 * 119.99858 * 295.49768 * 4 2 1 7 7 N 1.31514 * 120.00427 * 353.40371 * 6 4 2 8 8 Si 1.86802 * 119.99723 * 173.67756 * 6 4 2 9 9 H 1.48504 * 109.47117 * 264.77284 * 8 6 4 10 10 H 1.48501 * 109.47483 * 24.77703 * 8 6 4 11 11 H 1.48501 * 109.46930 * 144.77629 * 8 6 4 12 12 N 1.46502 * 109.46816 * 240.00581 * 2 1 3 13 13 C 1.34779 * 120.00042 * 85.00295 * 12 2 1 14 14 O 1.21363 * 119.99983 * 359.97438 * 13 12 2 15 15 C 1.49328 * 119.99754 * 179.97438 * 13 12 2 16 16 O 1.21391 * 120.00253 * 359.97438 * 15 13 12 17 17 N 1.34781 * 120.00136 * 179.97438 * 15 13 12 18 18 C 1.39883 * 120.00201 * 185.47861 * 17 15 13 19 19 C 1.38602 * 119.94908 * 21.05106 * 18 17 15 20 20 C 1.38164 * 120.26273 * 179.78307 * 19 18 17 21 21 C 1.38401 * 119.83645 * 0.65314 * 20 19 18 22 22 C 1.37841 * 120.12373 * 359.78957 * 21 20 19 23 23 C 1.38722 * 120.83115 * 359.60545 * 22 21 20 24 24 O 1.36195 * 111.25739 * 181.02030 * 23 22 21 25 25 C 1.43788 * 109.18055 * 340.67212 * 24 23 22 26 26 C 1.52996 * 110.75521 * 269.54355 * 25 24 23 27 27 C 1.52997 * 110.90992 * 146.25031 * 25 24 23 28 28 C 1.51663 * 132.11275 * 179.09001 * 22 21 20 29 29 H 1.09000 * 109.47278 * 57.65686 * 1 2 3 30 30 H 1.08999 * 109.47104 * 177.66063 * 1 2 3 31 31 H 1.09004 * 109.46780 * 297.65749 * 1 2 3 32 32 H 0.96994 * 120.00209 * 180.27203 * 7 6 4 33 33 H 0.97000 * 119.99468 * 264.99102 * 12 2 1 34 34 H 0.96996 * 119.99488 * 5.47897 * 17 15 13 35 35 H 1.08005 * 119.87236 * 0.02562 * 19 18 17 36 36 H 1.08000 * 120.08736 * 180.44258 * 20 19 18 37 37 H 1.08004 * 119.94264 * 179.76933 * 21 20 19 38 38 H 1.08995 * 109.47362 * 173.33364 * 26 25 24 39 39 H 1.08996 * 109.47280 * 293.33833 * 26 25 24 40 40 H 1.09002 * 109.46973 * 53.33538 * 26 25 24 41 41 H 1.09005 * 109.47417 * 306.57253 * 27 25 24 42 42 H 1.09003 * 109.47058 * 66.57545 * 27 25 24 43 43 H 1.09003 * 109.47044 * 186.57276 * 27 25 24 44 44 H 1.08997 * 110.93658 * 313.76994 * 28 22 21 45 45 H 1.09003 * 110.93453 * 77.44961 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.5920 -1.6290 1.1329 6 6 1.7776 -0.1878 2.4805 7 7 1.2112 0.9934 2.5966 8 14 2.2439 -1.1542 4.0096 9 1 1.0671 -1.9243 4.4865 10 1 3.3500 -2.0905 3.6853 11 1 2.6853 -0.2159 5.0727 12 7 2.0182 -0.6905 -1.1963 13 6 2.1470 -0.0180 -2.3572 14 8 1.8580 1.1594 -2.4117 15 6 2.6452 -0.7218 -3.5764 16 8 2.9347 -1.8994 -3.5218 17 7 2.7735 -0.0495 -4.7375 18 6 3.1298 -0.7321 -5.9053 19 6 2.9308 -2.1009 -5.9947 20 6 3.2762 -2.7809 -7.1468 21 6 3.8355 -2.0941 -8.2103 22 6 4.0438 -0.7343 -8.1229 23 6 3.6917 -0.0332 -6.9789 24 8 3.9614 1.2952 -7.1112 25 6 4.9144 1.4804 -8.1719 26 6 6.3444 1.4377 -7.6296 27 6 4.6571 2.7933 -8.9141 28 6 4.6408 0.2675 -9.0925 29 1 -0.3634 0.5498 -0.8682 30 1 -0.3633 -1.0268 -0.0419 31 1 -0.3633 0.4771 0.9103 32 1 1.0355 1.3628 3.4761 33 1 2.2490 -1.6316 -1.1527 34 1 2.6188 0.9077 -4.7632 35 1 2.5005 -2.6374 -5.1620 36 1 3.1133 -3.8463 -7.2161 37 1 4.1096 -2.6246 -9.1102 38 1 7.0491 1.4610 -8.4608 39 1 6.5143 2.3000 -6.9849 40 1 6.4885 0.5217 -7.0567 41 1 3.6181 2.8279 -9.2419 42 1 4.8559 3.6325 -8.2475 43 1 5.3141 2.8550 -9.7817 44 1 5.5677 -0.1117 -9.5228 45 1 3.9268 0.5255 -9.8747 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530390008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:54 Heat of formation + Delta-G solvation = -94.302655 kcal Electronic energy + Delta-G solvation = -28148.264733 eV Core-core repulsion = 24130.459118 eV Total energy + Delta-G solvation = -4017.805615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.62757 -41.76971 -40.02891 -38.45622 -37.08631 -36.11846 -34.58370 -34.31445 -32.25096 -31.23582 -30.40034 -28.39756 -27.57251 -27.37777 -26.31813 -23.52125 -23.46445 -22.05031 -21.67953 -21.17796 -20.24613 -18.58490 -18.37653 -17.87583 -17.47517 -17.12756 -17.04346 -16.67034 -16.41540 -16.06684 -15.86214 -15.25890 -15.12185 -14.85709 -14.68167 -14.45549 -14.25063 -13.88152 -13.72896 -13.65504 -13.25903 -13.07466 -13.04777 -12.98552 -12.92222 -12.82665 -12.72013 -12.61776 -12.40931 -12.26062 -12.10728 -11.90493 -11.80455 -11.53024 -11.21005 -10.65139 -10.57605 -10.04034 -9.45602 -8.91452 -8.24247 -6.39282 -0.14137 0.27941 0.60117 1.23562 1.44572 1.45486 1.56598 2.05980 2.12356 2.37660 2.65564 2.71935 3.08390 3.39066 3.41995 3.50208 3.84570 3.95515 4.04104 4.13028 4.30107 4.38519 4.55086 4.64923 4.65828 4.69363 4.74236 4.82559 4.83405 4.90176 4.95138 4.97978 5.00044 5.15900 5.23227 5.25320 5.28122 5.36628 5.41076 5.49808 5.56091 5.68985 5.71575 5.92343 5.95099 6.15719 6.44345 6.63055 6.71599 7.02747 7.32272 8.84599 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.002460 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.139035 B =11378.862211 C =11984.086662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.266 3.734 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.072 0.928 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.265 1.265 11 H -0.284 1.284 12 N -0.667 5.667 13 C 0.495 3.505 14 O -0.559 6.559 15 C 0.516 3.484 16 O -0.512 6.512 17 N -0.632 5.632 18 C 0.104 3.896 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.081 4.081 22 C -0.156 4.156 23 C 0.063 3.937 24 O -0.320 6.320 25 C 0.089 3.911 26 C -0.162 4.162 27 C -0.138 4.138 28 C -0.091 4.091 29 H 0.022 0.978 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.268 0.732 33 H 0.411 0.589 34 H 0.425 0.575 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.269 -3.674 -27.702 29.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.591 4.591 5 H 0.090 0.910 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.189 1.189 11 H -0.210 1.210 12 N -0.317 5.317 13 C 0.275 3.725 14 O -0.439 6.439 15 C 0.299 3.701 16 O -0.388 6.388 17 N -0.276 5.276 18 C 0.010 3.990 19 C -0.144 4.144 20 C -0.141 4.141 21 C -0.100 4.100 22 C -0.157 4.157 23 C 0.016 3.984 24 O -0.236 6.236 25 C 0.053 3.947 26 C -0.219 4.219 27 C -0.195 4.195 28 C -0.127 4.127 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.247 0.753 34 H 0.263 0.737 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.179 0.821 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.136 0.864 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.098 -3.313 -27.358 28.723 hybrid contribution -0.043 0.065 1.408 1.410 sum 8.055 -3.248 -25.950 27.365 Atomic orbital electron populations 1.21869 0.97417 0.99838 0.99927 1.18646 0.91633 0.92637 0.80681 0.96571 1.21477 1.36854 1.10021 0.90734 0.91002 1.25756 0.94615 0.95512 1.02191 1.70084 1.43038 1.17059 1.25100 0.85337 0.78781 0.78265 0.78013 1.19589 1.18907 1.20980 1.46238 1.61767 1.14841 1.08823 1.20107 0.80282 0.86988 0.85125 1.90719 1.51544 1.16444 1.85176 1.20179 0.78713 0.86883 0.84337 1.90644 1.47831 1.15648 1.84701 1.43047 1.65411 1.13264 1.05907 1.17459 1.05027 0.92266 0.84281 1.21470 1.00897 0.91314 1.00737 1.21303 0.99521 1.01430 0.91839 1.20733 0.97827 0.91602 0.99825 1.21005 1.04539 0.95633 0.94533 1.19295 0.99610 0.84833 0.94639 1.86881 1.60099 1.19960 1.56655 1.23118 0.88545 0.98007 0.85064 1.22224 0.94691 1.02125 1.02872 1.21880 1.03637 0.93460 1.00540 1.21977 1.03181 0.90957 0.96623 0.95871 0.93370 0.92049 0.92289 0.75258 0.73692 0.83692 0.82406 0.82065 0.87738 0.92030 0.93672 0.91586 0.91862 0.87393 0.86388 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 9.33 71.98 0.67 -5.86 16 2 C 0.27 13.89 2.44 44.24 0.11 14.00 16 3 H 0.02 0.99 7.56 -2.38 -0.02 0.97 16 4 C -0.55 -29.65 8.68 25.60 0.22 -29.43 16 5 H 0.07 3.67 7.73 -2.91 -0.02 3.65 16 6 C 0.02 1.09 5.23 84.65 0.44 1.53 16 7 N -0.92 -52.36 11.95 21.45 0.26 -52.10 16 8 Si 0.97 42.25 29.54 68.60 2.03 44.27 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.67 -29.66 5.06 -447.55 -2.27 -31.93 16 13 C 0.50 21.15 7.85 87.23 0.68 21.84 16 14 O -0.56 -26.69 16.15 -3.29 -0.05 -26.75 16 15 C 0.52 18.90 7.72 87.23 0.67 19.58 16 16 O -0.51 -18.99 13.42 -3.37 -0.05 -19.03 16 17 N -0.63 -20.58 5.37 -304.23 -1.63 -22.21 16 18 C 0.10 3.05 6.51 38.34 0.25 3.30 16 19 C -0.12 -3.35 8.74 22.34 0.20 -3.16 16 20 C -0.12 -2.38 10.06 22.29 0.22 -2.15 16 21 C -0.08 -1.32 10.03 22.21 0.22 -1.10 16 22 C -0.16 -2.96 6.26 -19.54 -0.12 -3.08 16 23 C 0.06 1.63 6.78 22.79 0.15 1.78 16 24 O -0.32 -8.00 10.54 -95.78 -1.01 -9.01 16 25 C 0.09 1.42 1.26 -10.21 -0.01 1.41 16 26 C -0.16 -2.37 8.86 71.98 0.64 -1.73 16 27 C -0.14 -1.53 8.95 71.98 0.64 -0.89 16 28 C -0.09 -1.11 6.18 30.74 0.19 -0.92 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 3.28 6.65 -2.38 -0.02 3.26 16 32 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.41 16.68 8.00 -92.71 -0.74 15.94 16 34 H 0.43 13.64 8.25 -92.71 -0.76 12.87 16 35 H 0.15 4.35 5.48 -2.91 -0.02 4.33 16 36 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.04 0.83 8.07 -2.39 -0.02 0.81 16 41 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.12 0.85 7.92 -2.39 -0.02 0.83 16 45 H 0.11 1.00 7.92 -2.39 -0.02 0.99 16 Total: -1.00 -68.30 377.23 1.99 -66.31 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.47 Total: 35.32 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 5.19 Total: 15.13 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.64 Total: -106.24 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -1.11 Total: -54.79 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -68.30 1.99 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530390008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.997 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds