Wall clock time and date at job start Tue Mar 31 2020 18:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47412 * 2 1 4 4 N 1.46898 * 109.47404 * 239.99661 * 2 1 3 5 5 C 1.46904 * 111.00007 * 84.99861 * 4 2 1 6 6 C 1.53001 * 109.47293 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47389 * 305.00803 * 6 5 4 8 8 O 1.42910 * 109.46820 * 65.00243 * 6 5 4 9 9 C 1.52998 * 109.47280 * 184.99976 * 6 5 4 10 10 O 1.42897 * 109.46939 * 175.00262 * 9 6 5 11 11 C 1.35679 * 116.99986 * 180.02562 * 10 9 6 12 12 C 1.39310 * 119.82012 * 179.97438 * 11 10 9 13 13 C 1.36434 * 120.18388 * 179.72146 * 12 11 10 14 14 C 1.40833 * 119.81229 * 0.28410 * 13 12 11 15 15 C 1.41217 * 120.17634 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00063 * 204.54326 * 15 14 13 17 17 C 1.39888 * 120.00226 * 24.54833 * 15 14 13 18 18 N 1.30881 * 120.00110 * 17.92863 * 17 15 14 19 19 Si 1.86803 * 119.99833 * 197.93362 * 17 15 14 20 20 H 1.48507 * 109.47341 * 89.99840 * 19 17 15 21 21 H 1.48504 * 109.47207 * 209.99555 * 19 17 15 22 22 H 1.48495 * 109.47455 * 329.99651 * 19 17 15 23 23 C 1.40829 * 119.64308 * 359.97438 * 14 13 12 24 24 C 1.36438 * 119.80864 * 0.02562 * 23 14 13 25 25 C 1.50700 * 109.47280 * 119.99536 * 2 1 3 26 26 C 1.41379 * 126.80550 * 274.71526 * 25 2 1 27 27 C 1.35451 * 103.98575 * 179.88521 * 26 25 2 28 28 O 1.34041 * 106.44814 * 0.36523 * 27 26 25 29 29 N 1.20920 * 111.56624 * 359.75292 * 28 27 26 30 30 H 1.08997 * 109.47607 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47198 * 300.00677 * 1 2 3 32 32 H 1.09006 * 109.47134 * 60.00007 * 1 2 3 33 33 H 1.00896 * 111.00110 * 321.04813 * 4 2 1 34 34 H 1.08999 * 109.46858 * 60.00321 * 5 4 2 35 35 H 1.08991 * 109.47200 * 300.00492 * 5 4 2 36 36 H 0.96702 * 113.99477 * 60.00201 * 8 6 5 37 37 H 1.09005 * 109.46881 * 55.00340 * 9 6 5 38 38 H 1.08998 * 109.47164 * 295.00328 * 9 6 5 39 39 H 1.08000 * 119.90685 * 0.02562 * 12 11 10 40 40 H 1.07999 * 120.09173 * 180.29736 * 13 12 11 41 41 H 0.97005 * 119.99879 * 180.02562 * 18 17 15 42 42 H 1.07999 * 120.09227 * 180.02562 * 23 14 13 43 43 H 1.08003 * 119.90520 * 179.97438 * 24 23 14 44 44 H 1.08004 * 128.00208 * 0.02562 * 26 25 2 45 45 H 1.08000 * 126.77179 * 180.13924 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5963 -0.5330 -3.5741 7 1 3.5520 -1.0012 -3.3387 8 8 1.6513 -1.5392 -3.9442 9 6 2.7801 0.4458 -4.7356 10 8 3.3690 -0.2363 -5.8446 11 6 3.6013 0.4942 -6.9642 12 6 4.1739 -0.1118 -8.0803 13 6 4.4055 0.6143 -9.2119 14 6 4.0695 1.9815 -9.2475 15 6 4.3053 2.7402 -10.4150 16 1 4.4326 3.8106 -10.3469 17 6 4.3740 2.1055 -11.6597 18 7 3.8850 0.9006 -11.8078 19 14 5.1639 2.9778 -13.1105 20 1 6.6146 2.6624 -13.1478 21 1 4.5254 2.5201 -14.3707 22 1 4.9797 4.4442 -12.9666 23 6 3.4960 2.5876 -8.1131 24 6 3.2709 1.8473 -6.9894 25 6 2.0323 -0.7103 1.2305 26 6 2.2269 -0.1480 2.5130 27 6 2.6814 -1.1833 3.2588 28 8 2.7414 -2.2431 2.4404 29 7 2.3783 -1.9620 1.3218 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.4496 -1.4980 -1.4100 34 1 2.7588 1.0461 -2.1182 35 1 1.0871 0.6162 -2.5525 36 1 0.7762 -1.1936 -4.1675 37 1 3.4318 1.2619 -4.4233 38 1 1.8103 0.8474 -5.0293 39 1 4.4307 -1.1604 -8.0513 40 1 4.8451 0.1419 -10.0779 41 1 3.9330 0.4604 -12.6708 42 1 3.2351 3.6355 -8.1326 43 1 2.8315 2.3106 -6.1183 44 1 2.0514 0.8707 2.8260 45 1 2.9467 -1.1586 4.3054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567026483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:54 Heat of formation + Delta-G solvation = -6.998371 kcal Electronic energy + Delta-G solvation = -26804.691521 eV Core-core repulsion = 22790.671704 eV Total energy + Delta-G solvation = -4014.019817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.17597 -39.19441 -38.22815 -36.88982 -35.96195 -33.86350 -33.31541 -31.94400 -31.18077 -29.93886 -29.19129 -28.69411 -25.65333 -24.69250 -23.88635 -23.33089 -21.98120 -20.87943 -20.64138 -20.48742 -18.23588 -17.73562 -17.36246 -17.18798 -16.49536 -16.40330 -15.93655 -15.29425 -15.14715 -14.89022 -14.44053 -14.10628 -13.93260 -13.79976 -13.60933 -13.42695 -13.31001 -12.87344 -12.42726 -12.25134 -12.20726 -12.13439 -11.90524 -11.78096 -11.51695 -11.38064 -11.15412 -10.98905 -10.80774 -10.59838 -10.38739 -10.05137 -9.95729 -9.90014 -9.81609 -9.33066 -9.02489 -8.78937 -7.64276 -7.03167 -6.71947 -4.25527 1.25278 1.95988 2.77995 2.95065 3.00030 3.08844 3.12015 3.21667 3.40290 3.85108 3.95272 4.08233 4.37854 4.43063 4.61930 4.64027 4.68908 4.85604 4.86929 4.95147 5.02266 5.09398 5.13303 5.27171 5.36473 5.37828 5.46117 5.59911 5.60703 5.67491 5.73504 6.04731 6.05841 6.23227 6.57815 6.73406 6.97689 7.04767 7.11242 7.18738 7.46295 7.55629 7.62638 7.79005 8.00763 8.06336 8.20645 8.45524 8.65594 8.90063 8.98884 10.22445 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037358 B = 0.001654 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.334320 B =16927.859087 C =17075.194379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.162 3.838 3 H 0.099 0.901 4 N -0.673 5.673 5 C 0.032 3.968 6 C 0.112 3.888 7 H 0.115 0.885 8 O -0.549 6.549 9 C 0.040 3.960 10 O -0.317 6.317 11 C -0.009 4.009 12 C -0.119 4.119 13 C -0.133 4.133 14 C 0.087 3.913 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.198 4.198 24 C -0.169 4.169 25 C 0.026 3.974 26 C -0.234 4.234 27 C -0.064 4.064 28 O 0.097 5.903 29 N -0.340 5.340 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.356 0.644 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.369 0.631 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.280 0.720 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.169 0.831 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.978 -0.510 25.581 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.051 3.949 3 H 0.117 0.883 4 N -0.306 5.306 5 C -0.097 4.097 6 C 0.052 3.948 7 H 0.133 0.867 8 O -0.354 6.354 9 C -0.037 4.037 10 O -0.232 6.232 11 C -0.052 4.052 12 C -0.138 4.138 13 C -0.152 4.152 14 C 0.085 3.915 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.425 5.425 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.218 4.218 24 C -0.188 4.188 25 C -0.134 4.134 26 C -0.256 4.256 27 C -0.145 4.145 28 O 0.030 5.970 29 N -0.042 5.042 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.176 0.824 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.216 0.784 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.144 0.856 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.187 0.813 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.766 -2.231 24.800 25.352 hybrid contribution -1.282 2.099 -0.432 2.498 sum -6.048 -0.131 24.367 25.107 Atomic orbital electron populations 1.22474 0.95382 1.02973 1.02951 1.19815 0.92818 0.96558 0.85752 0.88305 1.60262 1.58135 1.09598 1.02565 1.22590 1.00349 0.95826 0.90946 1.21955 0.94137 0.88864 0.89805 0.86717 1.86672 1.24000 1.34974 1.89719 1.23073 0.97957 0.95218 0.87483 1.85895 1.78701 1.37670 1.20961 1.18624 1.08931 0.90471 0.87147 1.19852 1.03224 0.98659 0.92059 1.20986 1.02847 0.95099 0.96277 1.17604 0.89471 0.92275 0.92169 1.19464 1.43831 0.95349 0.90746 0.90554 1.25880 0.93028 0.94824 1.00481 1.69837 1.33188 1.13512 1.25917 0.86323 0.80077 0.80585 0.79764 1.19316 1.20387 1.18737 1.20549 1.07541 0.98695 0.95033 1.20388 1.06393 0.93268 0.98714 1.23510 1.02537 0.90799 0.96599 1.22679 1.07963 1.02035 0.92878 1.26007 1.02801 0.86494 0.99201 1.84898 1.62317 1.35287 1.14515 1.73910 1.14410 1.17172 0.98753 0.91917 0.91489 0.91484 0.82374 0.89651 0.94337 0.78440 0.92355 0.93044 0.88403 0.85646 0.90905 0.88788 0.88988 0.81311 0.76923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 9.14 37.15 0.34 -0.84 16 2 C 0.16 1.33 3.09 -68.87 -0.21 1.11 16 3 H 0.10 0.70 7.80 -51.93 -0.40 0.30 16 4 N -0.67 -6.78 6.10 -107.95 -0.66 -7.44 16 5 C 0.03 0.31 5.16 -3.82 -0.02 0.29 16 6 C 0.11 1.43 3.49 -26.73 -0.09 1.33 16 7 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 8 O -0.55 -7.39 12.83 -40.09 -0.51 -7.90 16 9 C 0.04 0.61 4.36 37.16 0.16 0.77 16 10 O -0.32 -6.59 10.09 -23.59 -0.24 -6.83 16 11 C -0.01 -0.20 6.71 -38.78 -0.26 -0.46 16 12 C -0.12 -2.95 9.92 -39.83 -0.40 -3.34 16 13 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 14 C 0.09 2.34 5.57 -106.81 -0.60 1.75 16 15 C -0.46 -12.37 9.04 -37.83 -0.34 -12.72 16 16 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 17 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 18 N -0.80 -20.84 10.96 55.54 0.61 -20.23 16 19 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 23 C -0.20 -4.89 9.74 -39.25 -0.38 -5.27 16 24 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 16 25 C 0.03 0.24 6.28 -82.10 -0.52 -0.27 16 26 C -0.23 -1.54 11.12 -39.38 -0.44 -1.98 16 27 C -0.06 -0.37 12.30 29.74 0.37 0.00 16 28 O 0.10 0.92 11.20 17.17 0.19 1.11 16 29 N -0.34 -3.89 11.89 33.43 0.40 -3.49 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.41 7.45 -51.93 -0.39 0.02 16 33 H 0.36 3.82 8.03 -39.29 -0.32 3.51 16 34 H 0.09 0.76 8.06 -51.93 -0.42 0.34 16 35 H 0.04 0.31 7.43 -51.93 -0.39 -0.08 16 36 H 0.37 3.65 9.05 45.56 0.41 4.06 16 37 H 0.06 0.84 7.63 -51.93 -0.40 0.45 16 38 H 0.05 0.74 7.66 -51.93 -0.40 0.34 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 41 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 42 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.09 1.77 6.27 -52.48 -0.33 1.45 16 44 H 0.17 0.66 8.06 -52.48 -0.42 0.23 16 45 H 0.21 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 381.03 15.07 5.74 5.74 Total: -1.00 -32.13 381.03 -8.13 -40.26 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.45 Total: 10.89 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.17 Total: -25.86 kcal Atomic # 7 Polarization: -31.51 SS G_CDS: 0.35 Total: -31.16 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.56 Total: -13.62 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.13 -8.13 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567026483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.257 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds