Wall clock time and date at job start Tue Mar 31 2020 18:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47412 * 2 1 4 4 N 1.46898 * 109.47404 * 239.99661 * 2 1 3 5 5 C 1.46904 * 111.00007 * 84.99861 * 4 2 1 6 6 C 1.53001 * 109.47293 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.47389 * 305.00803 * 6 5 4 8 8 O 1.42910 * 109.46820 * 65.00243 * 6 5 4 9 9 C 1.52998 * 109.47280 * 184.99976 * 6 5 4 10 10 O 1.42897 * 109.46939 * 175.00262 * 9 6 5 11 11 C 1.35679 * 116.99986 * 180.02562 * 10 9 6 12 12 C 1.39310 * 119.82012 * 179.97438 * 11 10 9 13 13 C 1.36434 * 120.18388 * 179.72146 * 12 11 10 14 14 C 1.40833 * 119.81229 * 0.28410 * 13 12 11 15 15 C 1.41217 * 120.17634 * 180.02562 * 14 13 12 16 16 H 1.08006 * 120.00063 * 204.54326 * 15 14 13 17 17 C 1.39888 * 120.00226 * 24.54833 * 15 14 13 18 18 N 1.30881 * 120.00110 * 17.92863 * 17 15 14 19 19 Si 1.86803 * 119.99833 * 197.93362 * 17 15 14 20 20 H 1.48507 * 109.47341 * 89.99840 * 19 17 15 21 21 H 1.48504 * 109.47207 * 209.99555 * 19 17 15 22 22 H 1.48495 * 109.47455 * 329.99651 * 19 17 15 23 23 C 1.40829 * 119.64308 * 359.97438 * 14 13 12 24 24 C 1.36438 * 119.80864 * 0.02562 * 23 14 13 25 25 C 1.50700 * 109.47280 * 119.99536 * 2 1 3 26 26 C 1.41379 * 126.80550 * 274.71526 * 25 2 1 27 27 C 1.35451 * 103.98575 * 179.88521 * 26 25 2 28 28 O 1.34041 * 106.44814 * 0.36523 * 27 26 25 29 29 N 1.20920 * 111.56624 * 359.75292 * 28 27 26 30 30 H 1.08997 * 109.47607 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47198 * 300.00677 * 1 2 3 32 32 H 1.09006 * 109.47134 * 60.00007 * 1 2 3 33 33 H 1.00896 * 111.00110 * 321.04813 * 4 2 1 34 34 H 1.08999 * 109.46858 * 60.00321 * 5 4 2 35 35 H 1.08991 * 109.47200 * 300.00492 * 5 4 2 36 36 H 0.96702 * 113.99477 * 60.00201 * 8 6 5 37 37 H 1.09005 * 109.46881 * 55.00340 * 9 6 5 38 38 H 1.08998 * 109.47164 * 295.00328 * 9 6 5 39 39 H 1.08000 * 119.90685 * 0.02562 * 12 11 10 40 40 H 1.07999 * 120.09173 * 180.29736 * 13 12 11 41 41 H 0.97005 * 119.99879 * 180.02562 * 18 17 15 42 42 H 1.07999 * 120.09227 * 180.02562 * 23 14 13 43 43 H 1.08003 * 119.90520 * 179.97438 * 24 23 14 44 44 H 1.08004 * 128.00208 * 0.02562 * 26 25 2 45 45 H 1.08000 * 126.77179 * 180.13924 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 2.5963 -0.5330 -3.5741 7 1 3.5520 -1.0012 -3.3387 8 8 1.6513 -1.5392 -3.9442 9 6 2.7801 0.4458 -4.7356 10 8 3.3690 -0.2363 -5.8446 11 6 3.6013 0.4942 -6.9642 12 6 4.1739 -0.1118 -8.0803 13 6 4.4055 0.6143 -9.2119 14 6 4.0695 1.9815 -9.2475 15 6 4.3053 2.7402 -10.4150 16 1 4.4326 3.8106 -10.3469 17 6 4.3740 2.1055 -11.6597 18 7 3.8850 0.9006 -11.8078 19 14 5.1639 2.9778 -13.1105 20 1 6.6146 2.6624 -13.1478 21 1 4.5254 2.5201 -14.3707 22 1 4.9797 4.4442 -12.9666 23 6 3.4960 2.5876 -8.1131 24 6 3.2709 1.8473 -6.9894 25 6 2.0323 -0.7103 1.2305 26 6 2.2269 -0.1480 2.5130 27 6 2.6814 -1.1833 3.2588 28 8 2.7414 -2.2431 2.4404 29 7 2.3783 -1.9620 1.3218 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.4496 -1.4980 -1.4100 34 1 2.7588 1.0461 -2.1182 35 1 1.0871 0.6162 -2.5525 36 1 0.7762 -1.1936 -4.1675 37 1 3.4318 1.2619 -4.4233 38 1 1.8103 0.8474 -5.0293 39 1 4.4307 -1.1604 -8.0513 40 1 4.8451 0.1419 -10.0779 41 1 3.9330 0.4604 -12.6708 42 1 3.2351 3.6355 -8.1326 43 1 2.8315 2.3106 -6.1183 44 1 2.0514 0.8707 2.8260 45 1 2.9467 -1.1586 4.3054 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567026483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:53 Heat of formation + Delta-G solvation = -29.720929 kcal Electronic energy + Delta-G solvation = -26805.676845 eV Core-core repulsion = 22790.671704 eV Total energy + Delta-G solvation = -4015.005141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -45.77984 -40.68574 -39.36191 -38.15919 -37.25694 -35.18785 -34.52029 -32.57883 -32.13134 -31.55499 -30.94126 -29.85693 -26.95317 -26.07138 -24.77199 -23.89173 -23.20277 -22.45903 -22.25761 -21.25830 -19.26046 -18.95641 -18.57800 -18.36823 -17.65921 -17.48875 -17.07183 -16.67610 -16.15679 -15.83449 -15.70729 -15.59867 -15.16252 -14.87568 -14.58725 -14.31453 -14.11742 -14.04404 -13.95829 -13.83804 -13.51131 -13.14946 -13.04302 -12.82831 -12.80614 -12.61542 -12.46065 -12.39256 -12.12376 -11.94414 -11.70606 -11.59040 -11.25236 -11.04954 -10.90867 -10.87700 -10.46775 -9.57043 -9.47711 -8.93392 -8.59841 -6.23344 0.75236 0.94203 1.01942 1.39663 1.40170 1.52634 1.52928 2.22456 2.34962 2.58419 2.72191 3.09848 3.32075 3.44363 3.69576 3.82500 3.92093 3.98952 4.00296 4.12372 4.20790 4.28179 4.33325 4.35657 4.40924 4.44987 4.51757 4.64333 4.68492 4.78926 4.86303 4.96158 5.03219 5.07413 5.13122 5.21107 5.24895 5.27964 5.58193 5.63596 5.87607 5.92414 6.05296 6.25501 6.27551 6.56090 6.76191 6.81961 6.94607 7.09851 7.50916 8.36726 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037358 B = 0.001654 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.334320 B =16927.859087 C =17075.194379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.161 3.839 3 H 0.114 0.886 4 N -0.689 5.689 5 C 0.045 3.955 6 C 0.121 3.879 7 H 0.092 0.908 8 O -0.569 6.569 9 C 0.032 3.968 10 O -0.333 6.333 11 C 0.000 4.000 12 C -0.136 4.136 13 C -0.152 4.152 14 C 0.053 3.947 15 C -0.498 4.498 16 H 0.077 0.923 17 C 0.032 3.968 18 N -0.832 5.832 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.257 1.257 23 C -0.206 4.206 24 C -0.164 4.164 25 C 0.010 3.990 26 C -0.241 4.241 27 C -0.052 4.052 28 O 0.077 5.923 29 N -0.387 5.387 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.349 0.651 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.385 0.615 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.287 0.713 42 H 0.108 0.892 43 H 0.132 0.868 44 H 0.197 0.803 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.666 1.358 27.468 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.050 3.950 3 H 0.131 0.869 4 N -0.321 5.321 5 C -0.085 4.085 6 C 0.062 3.938 7 H 0.110 0.890 8 O -0.375 6.375 9 C -0.045 4.045 10 O -0.249 6.249 11 C -0.044 4.044 12 C -0.155 4.155 13 C -0.172 4.172 14 C 0.051 3.949 15 C -0.528 4.528 16 H 0.095 0.905 17 C -0.181 4.181 18 N -0.459 5.459 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.181 1.181 23 C -0.226 4.226 24 C -0.183 4.183 25 C -0.149 4.149 26 C -0.263 4.263 27 C -0.133 4.133 28 O 0.012 5.988 29 N -0.092 5.092 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.168 0.832 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.149 0.851 44 H 0.214 0.786 45 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.469 -0.363 26.731 27.288 hybrid contribution -1.129 1.456 -0.787 2.003 sum -6.598 1.093 25.944 26.792 Atomic orbital electron populations 1.22396 0.94227 1.02341 1.03997 1.19944 0.93702 0.96768 0.84546 0.86851 1.60227 1.58697 1.09845 1.03339 1.22454 1.01562 0.95237 0.89205 1.21829 0.93488 0.88310 0.90192 0.89031 1.86637 1.25113 1.35868 1.89909 1.23470 0.98559 0.96146 0.86277 1.85887 1.79030 1.38623 1.21387 1.18694 1.07254 0.90876 0.87542 1.20013 1.03877 0.99083 0.92555 1.20892 1.04248 0.95522 0.96534 1.17974 0.90702 0.92753 0.93495 1.19721 1.45769 0.95596 0.91744 0.90453 1.26757 0.92836 0.95502 1.03046 1.69898 1.33960 1.14982 1.27055 0.85190 0.78921 0.79438 0.76054 1.18864 1.19421 1.18064 1.20813 1.07091 0.99594 0.95061 1.20709 1.05397 0.92816 0.99358 1.23958 1.02214 0.90683 0.98073 1.23071 1.07995 1.03487 0.91730 1.26872 1.00851 0.85166 1.00423 1.84833 1.62682 1.36708 1.14590 1.73911 1.16618 1.18651 1.00036 0.93364 0.90212 0.90585 0.83178 0.88640 0.92102 0.76651 0.90968 0.91400 0.87805 0.87330 0.90236 0.87413 0.85050 0.78599 0.72698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 9.14 71.98 0.66 -1.27 16 2 C 0.16 2.35 3.09 44.17 0.14 2.49 16 3 H 0.11 1.29 7.80 -2.38 -0.02 1.27 16 4 N -0.69 -13.07 6.10 -495.46 -3.02 -16.09 16 5 C 0.04 0.74 5.16 86.30 0.44 1.18 16 6 C 0.12 2.92 3.49 30.59 0.11 3.03 16 7 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 8 O -0.57 -14.71 12.83 -144.34 -1.85 -16.56 16 9 C 0.03 0.89 4.36 71.98 0.31 1.21 16 10 O -0.33 -13.51 10.09 -85.33 -0.86 -14.37 16 11 C 0.00 0.01 6.71 22.79 0.15 0.16 16 12 C -0.14 -6.90 9.92 22.11 0.22 -6.68 16 13 C -0.15 -8.36 8.64 22.48 0.19 -8.16 16 14 C 0.05 2.91 5.57 -21.28 -0.12 2.79 16 15 C -0.50 -27.15 9.04 23.40 0.21 -26.94 16 16 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 17 C 0.03 1.66 5.13 85.23 0.44 2.10 16 18 N -0.83 -44.55 10.96 21.82 0.24 -44.31 16 19 Si 0.98 38.71 29.60 68.60 2.03 40.74 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 C -0.21 -10.06 9.74 22.48 0.22 -9.84 16 24 C -0.16 -7.15 8.96 22.11 0.20 -6.95 16 25 C 0.01 0.18 6.28 43.58 0.27 0.46 16 26 C -0.24 -2.63 11.12 22.40 0.25 -2.38 16 27 C -0.05 -0.49 12.30 67.18 0.83 0.33 16 28 O 0.08 1.42 11.20 71.63 0.80 2.22 16 29 N -0.39 -8.85 11.89 -49.54 -0.59 -9.44 16 30 H 0.05 0.69 8.13 -2.39 -0.02 0.67 16 31 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.08 0.72 7.45 -2.38 -0.02 0.70 16 33 H 0.35 7.36 8.03 -89.70 -0.72 6.64 16 34 H 0.10 1.41 8.06 -2.39 -0.02 1.39 16 35 H 0.06 0.76 7.43 -2.39 -0.02 0.74 16 36 H 0.38 6.97 9.05 -74.06 -0.67 6.30 16 37 H 0.07 1.86 7.63 -2.38 -0.02 1.84 16 38 H 0.07 1.72 7.66 -2.39 -0.02 1.70 16 39 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 40 H 0.11 6.19 6.16 -2.91 -0.02 6.17 16 41 H 0.29 13.92 8.30 -92.70 -0.77 13.15 16 42 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 44 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 45 H 0.26 -0.27 8.06 -2.91 -0.02 -0.30 16 Total: -1.00 -72.36 381.03 0.91 -71.45 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.36 Total: 34.83 kcal Atomic # 6 Polarization: -53.00 SS G_CDS: 4.52 Total: -48.48 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -3.37 Total: -69.84 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.91 Total: -28.71 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -72.36 0.91 -71.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567026483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.730 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds