Wall clock time and date at job start Tue Mar 31 2020 18:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46946 * 2 1 4 4 N 1.46898 * 109.47356 * 119.99770 * 2 1 3 5 5 C 1.46900 * 111.00290 * 275.00240 * 4 2 1 6 6 C 1.52995 * 109.47033 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.47094 * 304.99627 * 6 5 4 8 8 O 1.42897 * 109.47403 * 64.99937 * 6 5 4 9 9 C 1.53003 * 109.47116 * 185.00299 * 6 5 4 10 10 O 1.42894 * 109.47327 * 174.99893 * 9 6 5 11 11 C 1.35673 * 117.00170 * 179.97438 * 10 9 6 12 12 C 1.39308 * 119.81708 * 359.72351 * 11 10 9 13 13 C 1.36439 * 120.18660 * 179.76089 * 12 11 10 14 14 C 1.40829 * 119.80976 * 0.51216 * 13 12 11 15 15 C 1.41219 * 120.17966 * 179.71971 * 14 13 12 16 16 H 1.07995 * 119.99910 * 24.57577 * 15 14 13 17 17 C 1.39895 * 119.99995 * 204.57055 * 15 14 13 18 18 N 1.30881 * 119.99752 * 17.93416 * 17 15 14 19 19 Si 1.86801 * 119.99937 * 197.93381 * 17 15 14 20 20 H 1.48504 * 109.46878 * 90.00022 * 19 17 15 21 21 H 1.48498 * 109.46897 * 210.00287 * 19 17 15 22 22 H 1.48501 * 109.47085 * 330.00263 * 19 17 15 23 23 C 1.40834 * 119.64469 * 359.74261 * 14 13 12 24 24 C 1.36436 * 119.80679 * 359.97438 * 23 14 13 25 25 C 1.50700 * 109.47135 * 240.00151 * 2 1 3 26 26 C 1.41388 * 126.80051 * 84.99774 * 25 2 1 27 27 C 1.35451 * 103.98047 * 180.02562 * 26 25 2 28 28 O 1.34037 * 106.44909 * 359.97438 * 27 26 25 29 29 N 1.20922 * 111.56754 * 359.70970 * 28 27 26 30 30 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47091 * 299.99628 * 1 2 3 32 32 H 1.08993 * 109.47231 * 59.99922 * 1 2 3 33 33 H 1.00900 * 110.99566 * 151.04744 * 4 2 1 34 34 H 1.08999 * 109.46620 * 59.99955 * 5 4 2 35 35 H 1.08999 * 109.47026 * 300.00157 * 5 4 2 36 36 H 0.96698 * 113.99777 * 60.00051 * 8 6 5 37 37 H 1.08994 * 109.46982 * 54.99437 * 9 6 5 38 38 H 1.09007 * 109.46438 * 294.99833 * 9 6 5 39 39 H 1.08002 * 119.90590 * 0.02562 * 12 11 10 40 40 H 1.08003 * 120.09399 * 180.25236 * 13 12 11 41 41 H 0.97000 * 119.99608 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.09776 * 179.97438 * 23 14 13 43 43 H 1.08008 * 119.90868 * 179.97438 * 24 23 14 44 44 H 1.07994 * 128.00662 * 359.95979 * 26 25 2 45 45 H 1.08000 * 126.77166 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5963 -0.5328 3.5741 7 1 1.9711 -1.4082 3.7500 8 8 3.9447 -0.9483 3.3477 9 6 2.5440 0.3852 4.7970 10 8 2.9129 -0.3534 5.9633 11 6 2.9182 0.3186 7.1419 12 6 2.5788 1.6694 7.1706 13 6 2.5769 2.3513 8.3523 14 6 2.9300 1.6885 9.5437 15 6 2.9364 2.3882 10.7703 16 1 2.3219 3.2677 10.8935 17 6 3.7387 1.9420 11.8259 18 7 4.7277 1.1171 11.5927 19 14 3.3985 2.5236 13.5681 20 1 2.4476 1.5907 14.2245 21 1 4.6691 2.5568 14.3359 22 1 2.8081 3.8857 13.5289 23 6 3.2770 0.3241 9.5052 24 6 3.2682 -0.3446 8.3160 25 6 2.0324 -0.7104 -1.2305 26 6 2.2216 -0.1493 -2.5144 27 6 2.6804 -1.1836 -3.2591 28 8 2.7406 -2.2433 -2.4406 29 7 2.3836 -1.9606 -1.3203 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.9174 -1.1204 1.0286 34 1 1.0871 0.6163 2.5525 35 1 2.7588 1.0463 2.1182 36 1 4.5586 -0.2194 3.1837 37 1 1.5325 0.7729 4.9172 38 1 3.2370 1.2151 4.6581 39 1 2.3122 2.1772 6.2554 40 1 2.3096 3.3975 8.3735 41 1 5.2843 0.8080 12.3246 42 1 3.5494 -0.1913 10.4143 43 1 3.5345 -1.3909 8.2845 44 1 2.0410 0.8679 -2.8288 45 1 2.9454 -1.1591 -4.3058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567026486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:08 Heat of formation + Delta-G solvation = -5.745647 kcal Electronic energy + Delta-G solvation = -26811.988989 eV Core-core repulsion = 22798.023495 eV Total energy + Delta-G solvation = -4013.965495 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.31263 -39.18125 -38.19083 -36.88044 -35.96565 -33.87789 -33.31352 -32.04060 -31.15538 -29.98420 -29.24505 -28.77952 -25.78201 -24.67388 -23.71616 -23.41181 -21.94018 -20.82160 -20.64041 -20.42932 -18.33234 -17.89330 -17.35821 -17.16245 -16.58373 -16.47649 -16.03238 -15.22496 -15.12499 -14.89636 -14.59478 -14.06254 -13.94546 -13.89566 -13.69448 -13.39435 -12.86062 -12.83690 -12.54531 -12.26578 -12.19880 -12.13076 -11.78038 -11.75083 -11.52265 -11.38060 -11.15241 -10.98310 -10.80706 -10.59919 -10.49006 -10.07002 -10.00297 -9.95465 -9.81297 -9.32860 -9.02241 -8.80741 -7.64042 -7.02913 -6.71843 -4.25285 1.13852 1.82402 2.78171 2.88846 2.95330 3.08942 3.12146 3.21854 3.38436 3.68345 3.95390 4.05597 4.36655 4.39564 4.62139 4.66276 4.75945 4.83038 4.91552 4.94194 5.00811 5.14301 5.17558 5.32522 5.33710 5.41789 5.51996 5.59477 5.61301 5.67664 5.88903 6.05196 6.06016 6.23477 6.59174 6.73640 6.97911 7.03781 7.11462 7.18969 7.46535 7.55870 7.62711 7.79274 7.92857 8.00998 8.20873 8.45781 8.65823 8.90237 8.99108 10.22604 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.041735 B = 0.001654 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.739717 B =16919.504925 C =17282.243681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.065 0.935 4 N -0.674 5.674 5 C 0.031 3.969 6 C 0.112 3.888 7 H 0.116 0.884 8 O -0.550 6.550 9 C 0.040 3.960 10 O -0.317 6.317 11 C -0.009 4.009 12 C -0.169 4.169 13 C -0.198 4.198 14 C 0.087 3.913 15 C -0.464 4.464 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.798 5.798 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.133 4.133 24 C -0.119 4.119 25 C 0.008 3.992 26 C -0.231 4.231 27 C -0.060 4.060 28 O 0.102 5.898 29 N -0.341 5.341 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.355 0.645 34 H 0.087 0.913 35 H 0.037 0.963 36 H 0.369 0.631 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.280 0.720 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.171 0.829 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 -0.195 -26.172 26.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.053 3.947 3 H 0.083 0.917 4 N -0.307 5.307 5 C -0.099 4.099 6 C 0.052 3.948 7 H 0.134 0.866 8 O -0.354 6.354 9 C -0.037 4.037 10 O -0.232 6.232 11 C -0.052 4.052 12 C -0.187 4.187 13 C -0.218 4.218 14 C 0.085 3.915 15 C -0.494 4.494 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.425 5.425 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.187 1.187 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.152 4.152 26 C -0.253 4.253 27 C -0.142 4.142 28 O 0.033 5.967 29 N -0.043 5.043 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.176 0.824 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.215 0.785 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.189 0.811 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.867 -2.368 -24.931 25.512 hybrid contribution 0.759 2.614 -0.106 2.724 sum -4.108 0.246 -25.037 25.373 Atomic orbital electron populations 1.21789 0.92648 1.03174 1.01905 1.19886 0.96401 0.94393 0.83977 0.91704 1.60368 1.35127 1.32168 1.03081 1.22632 1.01977 0.93867 0.91384 1.21951 0.84198 0.98543 0.90061 0.86629 1.86668 1.18083 1.36966 1.93670 1.23072 0.99987 0.94553 0.86113 1.85892 1.86012 1.37963 1.13352 1.18625 1.10477 0.91536 0.84556 1.20388 1.07141 0.93467 0.97748 1.20546 1.11053 0.98083 0.92142 1.17605 0.90144 0.91583 0.92173 1.19465 1.22673 1.11215 0.96047 0.90552 1.25882 0.93250 0.93889 1.01196 1.69837 1.12062 1.26533 1.34022 0.86322 0.78650 0.80149 0.81621 1.19311 1.20390 1.18734 1.20985 1.03766 0.94409 0.96066 1.19854 1.04467 0.98623 0.90836 1.23700 1.02990 0.91047 0.97439 1.22709 1.07584 1.02221 0.92807 1.26054 1.02572 0.86234 0.99320 1.84902 1.62286 1.35161 1.14324 1.73940 1.14635 1.16570 0.99158 0.91519 0.91481 0.92206 0.82434 0.89476 0.94524 0.78454 0.92314 0.93075 0.88989 0.88789 0.90906 0.85649 0.88403 0.81145 0.76717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.40 37.16 0.35 -0.72 16 2 C 0.16 1.40 3.12 -68.86 -0.22 1.19 16 3 H 0.07 0.47 7.80 -51.93 -0.40 0.07 16 4 N -0.67 -7.02 6.22 -107.95 -0.67 -7.69 16 5 C 0.03 0.30 5.16 -3.83 -0.02 0.28 16 6 C 0.11 1.45 3.49 -26.73 -0.09 1.35 16 7 H 0.12 1.67 8.14 -51.93 -0.42 1.24 16 8 O -0.55 -7.59 12.82 -40.08 -0.51 -8.10 16 9 C 0.04 0.62 4.36 37.16 0.16 0.78 16 10 O -0.32 -6.60 10.09 -23.57 -0.24 -6.84 16 11 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 12 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 16 13 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 14 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 15 C -0.46 -12.39 9.04 -37.83 -0.34 -12.73 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 17 C 0.07 1.89 5.13 -17.34 -0.09 1.80 16 18 N -0.80 -20.85 10.96 55.55 0.61 -20.24 16 19 Si 0.91 18.80 29.60 -169.99 -5.03 13.77 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.13 -3.52 8.64 -39.25 -0.34 -3.86 16 24 C -0.12 -2.95 9.92 -39.83 -0.40 -3.34 16 25 C 0.01 0.07 6.04 -82.10 -0.50 -0.42 16 26 C -0.23 -1.42 11.12 -39.38 -0.44 -1.86 16 27 C -0.06 -0.31 12.30 29.74 0.37 0.05 16 28 O 0.10 0.90 11.20 17.18 0.19 1.09 16 29 N -0.34 -3.74 11.59 33.42 0.39 -3.35 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.50 7.45 -51.93 -0.39 0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.36 4.11 7.64 -39.29 -0.30 3.81 16 34 H 0.09 0.79 7.44 -51.93 -0.39 0.40 16 35 H 0.04 0.31 8.05 -51.93 -0.42 -0.10 16 36 H 0.37 3.81 9.05 45.56 0.41 4.22 16 37 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 38 H 0.05 0.74 7.63 -51.92 -0.40 0.35 16 39 H 0.09 1.78 6.27 -52.49 -0.33 1.45 16 40 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 42 H 0.13 3.39 6.16 -52.49 -0.32 3.07 16 43 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 44 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.22 0.14 8.06 -52.49 -0.42 -0.29 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -31.91 380.52 -8.12 -40.03 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.44 Total: 11.25 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -3.15 Total: -25.65 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.32 Total: -31.28 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.56 Total: -13.85 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.91 -8.12 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567026486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.280 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds