Wall clock time and date at job start Tue Mar 31 2020 18:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46946 * 2 1 4 4 N 1.46898 * 109.47356 * 119.99770 * 2 1 3 5 5 C 1.46900 * 111.00290 * 275.00240 * 4 2 1 6 6 C 1.52995 * 109.47033 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.47094 * 304.99627 * 6 5 4 8 8 O 1.42897 * 109.47403 * 64.99937 * 6 5 4 9 9 C 1.53003 * 109.47116 * 185.00299 * 6 5 4 10 10 O 1.42894 * 109.47327 * 174.99893 * 9 6 5 11 11 C 1.35673 * 117.00170 * 179.97438 * 10 9 6 12 12 C 1.39308 * 119.81708 * 359.72351 * 11 10 9 13 13 C 1.36439 * 120.18660 * 179.76089 * 12 11 10 14 14 C 1.40829 * 119.80976 * 0.51216 * 13 12 11 15 15 C 1.41219 * 120.17966 * 179.71971 * 14 13 12 16 16 H 1.07995 * 119.99910 * 24.57577 * 15 14 13 17 17 C 1.39895 * 119.99995 * 204.57055 * 15 14 13 18 18 N 1.30881 * 119.99752 * 17.93416 * 17 15 14 19 19 Si 1.86801 * 119.99937 * 197.93381 * 17 15 14 20 20 H 1.48504 * 109.46878 * 90.00022 * 19 17 15 21 21 H 1.48498 * 109.46897 * 210.00287 * 19 17 15 22 22 H 1.48501 * 109.47085 * 330.00263 * 19 17 15 23 23 C 1.40834 * 119.64469 * 359.74261 * 14 13 12 24 24 C 1.36436 * 119.80679 * 359.97438 * 23 14 13 25 25 C 1.50700 * 109.47135 * 240.00151 * 2 1 3 26 26 C 1.41388 * 126.80051 * 84.99774 * 25 2 1 27 27 C 1.35451 * 103.98047 * 180.02562 * 26 25 2 28 28 O 1.34037 * 106.44909 * 359.97438 * 27 26 25 29 29 N 1.20922 * 111.56754 * 359.70970 * 28 27 26 30 30 H 1.09002 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47091 * 299.99628 * 1 2 3 32 32 H 1.08993 * 109.47231 * 59.99922 * 1 2 3 33 33 H 1.00900 * 110.99566 * 151.04744 * 4 2 1 34 34 H 1.08999 * 109.46620 * 59.99955 * 5 4 2 35 35 H 1.08999 * 109.47026 * 300.00157 * 5 4 2 36 36 H 0.96698 * 113.99777 * 60.00051 * 8 6 5 37 37 H 1.08994 * 109.46982 * 54.99437 * 9 6 5 38 38 H 1.09007 * 109.46438 * 294.99833 * 9 6 5 39 39 H 1.08002 * 119.90590 * 0.02562 * 12 11 10 40 40 H 1.08003 * 120.09399 * 180.25236 * 13 12 11 41 41 H 0.97000 * 119.99608 * 179.97438 * 18 17 15 42 42 H 1.07995 * 120.09776 * 179.97438 * 23 14 13 43 43 H 1.08008 * 119.90868 * 179.97438 * 24 23 14 44 44 H 1.07994 * 128.00662 * 359.95979 * 26 25 2 45 45 H 1.08000 * 126.77166 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5963 -0.5328 3.5741 7 1 1.9711 -1.4082 3.7500 8 8 3.9447 -0.9483 3.3477 9 6 2.5440 0.3852 4.7970 10 8 2.9129 -0.3534 5.9633 11 6 2.9182 0.3186 7.1419 12 6 2.5788 1.6694 7.1706 13 6 2.5769 2.3513 8.3523 14 6 2.9300 1.6885 9.5437 15 6 2.9364 2.3882 10.7703 16 1 2.3219 3.2677 10.8935 17 6 3.7387 1.9420 11.8259 18 7 4.7277 1.1171 11.5927 19 14 3.3985 2.5236 13.5681 20 1 2.4476 1.5907 14.2245 21 1 4.6691 2.5568 14.3359 22 1 2.8081 3.8857 13.5289 23 6 3.2770 0.3241 9.5052 24 6 3.2682 -0.3446 8.3160 25 6 2.0324 -0.7104 -1.2305 26 6 2.2216 -0.1493 -2.5144 27 6 2.6804 -1.1836 -3.2591 28 8 2.7406 -2.2433 -2.4406 29 7 2.3836 -1.9606 -1.3203 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.9174 -1.1204 1.0286 34 1 1.0871 0.6163 2.5525 35 1 2.7588 1.0463 2.1182 36 1 4.5586 -0.2194 3.1837 37 1 1.5325 0.7729 4.9172 38 1 3.2370 1.2151 4.6581 39 1 2.3122 2.1772 6.2554 40 1 2.3096 3.3975 8.3735 41 1 5.2843 0.8080 12.3246 42 1 3.5494 -0.1913 10.4143 43 1 3.5345 -1.3909 8.2845 44 1 2.0410 0.8679 -2.8288 45 1 2.9454 -1.1591 -4.3058 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567026486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:07 Heat of formation + Delta-G solvation = -28.271252 kcal Electronic energy + Delta-G solvation = -26812.965773 eV Core-core repulsion = 22798.023495 eV Total energy + Delta-G solvation = -4014.942278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -45.88358 -40.68856 -39.34899 -38.14737 -37.27305 -35.18900 -34.52801 -32.63191 -32.13043 -31.56357 -30.95679 -30.04757 -27.03828 -26.17525 -24.60700 -23.93193 -23.16942 -22.45284 -22.25431 -21.15230 -19.26103 -18.99864 -18.60355 -18.49356 -17.66488 -17.53702 -17.10279 -16.90560 -15.99649 -15.80377 -15.76690 -15.68544 -15.14412 -15.03108 -14.72712 -14.27348 -14.08910 -14.00411 -13.95542 -13.64185 -13.42863 -13.31380 -13.02532 -12.83208 -12.79763 -12.62021 -12.40267 -12.33715 -12.15973 -11.94029 -11.71009 -11.59386 -11.26841 -11.08833 -10.96670 -10.88303 -10.54466 -9.57092 -9.52446 -8.93438 -8.59942 -6.23345 0.67358 0.94149 1.01929 1.30283 1.39668 1.52683 1.52975 2.22473 2.33568 2.50434 2.72146 3.02833 3.18855 3.42548 3.69460 3.78493 3.91926 3.97367 3.98858 4.12868 4.25615 4.28401 4.34499 4.35471 4.38703 4.44768 4.50713 4.60216 4.73187 4.84885 4.88726 4.91319 5.01441 5.06982 5.16042 5.21035 5.27711 5.28016 5.58089 5.63579 5.87567 5.91110 6.05281 6.21735 6.25586 6.55999 6.73675 6.81376 6.94558 7.09735 7.41273 8.36704 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.041735 B = 0.001654 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.739717 B =16919.504925 C =17282.243681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.163 3.837 3 H 0.084 0.916 4 N -0.688 5.688 5 C 0.042 3.958 6 C 0.121 3.879 7 H 0.095 0.905 8 O -0.569 6.569 9 C 0.032 3.968 10 O -0.333 6.333 11 C 0.000 4.000 12 C -0.164 4.164 13 C -0.206 4.206 14 C 0.053 3.947 15 C -0.499 4.499 16 H 0.077 0.923 17 C 0.032 3.968 18 N -0.832 5.832 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.257 1.257 23 C -0.152 4.152 24 C -0.136 4.136 25 C -0.007 4.007 26 C -0.238 4.238 27 C -0.047 4.047 28 O 0.083 5.917 29 N -0.387 5.387 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.346 0.654 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.384 0.616 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.287 0.713 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.198 0.802 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 1.676 -28.172 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.053 3.947 3 H 0.101 0.899 4 N -0.321 5.321 5 C -0.087 4.087 6 C 0.062 3.938 7 H 0.113 0.887 8 O -0.376 6.376 9 C -0.044 4.044 10 O -0.249 6.249 11 C -0.044 4.044 12 C -0.183 4.183 13 C -0.226 4.226 14 C 0.051 3.949 15 C -0.528 4.528 16 H 0.096 0.904 17 C -0.181 4.181 18 N -0.459 5.459 19 Si 0.804 3.196 20 H -0.189 1.189 21 H -0.194 1.194 22 H -0.181 1.181 23 C -0.172 4.172 24 C -0.155 4.155 25 C -0.166 4.166 26 C -0.259 4.259 27 C -0.128 4.128 28 O 0.017 5.983 29 N -0.091 5.091 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.166 0.834 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.233 0.767 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.215 0.785 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -5.386 -0.493 -26.975 27.512 hybrid contribution 0.928 1.988 0.264 2.210 sum -4.458 1.495 -26.711 27.122 Atomic orbital electron populations 1.21766 0.92280 1.02015 1.03032 1.19994 0.96609 0.94983 0.83127 0.89856 1.60351 1.34685 1.32987 1.04103 1.22507 1.02858 0.93613 0.89703 1.21838 0.83828 0.97668 0.90506 0.88695 1.86633 1.18853 1.38406 1.93710 1.23461 1.01048 0.95275 0.84636 1.85884 1.85978 1.39173 1.13856 1.18695 1.08675 0.91821 0.85203 1.20708 1.05798 0.93157 0.98612 1.20809 1.10654 0.98896 0.92206 1.17975 0.91408 0.92033 0.93485 1.19723 1.23884 1.12041 0.97197 0.90449 1.26760 0.92429 0.93762 1.05187 1.69897 1.12841 1.27573 1.35584 0.85188 0.78713 0.79740 0.75951 1.18851 1.19422 1.18063 1.20892 1.05400 0.94720 0.96190 1.20015 1.05007 0.99149 0.91329 1.24019 1.02871 0.90958 0.98710 1.23081 1.07630 1.03672 0.91560 1.26924 1.00524 0.84827 1.00526 1.84841 1.62539 1.36546 1.14336 1.73942 1.16743 1.17980 1.00474 0.93765 0.90981 0.90425 0.83436 0.88289 0.92556 0.76745 0.90827 0.91525 0.85076 0.87418 0.90234 0.87324 0.87789 0.78482 0.72415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.40 71.98 0.68 -1.19 16 2 C 0.16 2.51 3.12 44.17 0.14 2.65 16 3 H 0.08 0.97 7.80 -2.39 -0.02 0.95 16 4 N -0.69 -13.59 6.22 -495.46 -3.08 -16.67 16 5 C 0.04 0.73 5.16 86.30 0.44 1.18 16 6 C 0.12 2.96 3.49 30.59 0.11 3.07 16 7 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 8 O -0.57 -15.19 12.82 -144.34 -1.85 -17.04 16 9 C 0.03 0.91 4.36 71.98 0.31 1.22 16 10 O -0.33 -13.53 10.09 -85.27 -0.86 -14.39 16 11 C 0.00 0.00 6.71 22.79 0.15 0.15 16 12 C -0.16 -7.17 8.96 22.11 0.20 -6.97 16 13 C -0.21 -10.08 9.74 22.48 0.22 -9.86 16 14 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16 15 C -0.50 -27.18 9.04 23.40 0.21 -26.97 16 16 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 17 C 0.03 1.66 5.13 85.24 0.44 2.10 16 18 N -0.83 -44.58 10.96 21.82 0.24 -44.34 16 19 Si 0.98 38.74 29.60 68.60 2.03 40.77 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 21 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 C -0.15 -8.37 8.64 22.48 0.19 -8.17 16 24 C -0.14 -6.89 9.92 22.11 0.22 -6.67 16 25 C -0.01 -0.11 6.04 43.58 0.26 0.15 16 26 C -0.24 -2.34 11.12 22.40 0.25 -2.09 16 27 C -0.05 -0.38 12.30 67.18 0.83 0.45 16 28 O 0.08 1.42 11.20 71.66 0.80 2.22 16 29 N -0.39 -8.44 11.59 -49.56 -0.57 -9.02 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.92 7.45 -2.39 -0.02 0.90 16 32 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.35 7.90 7.64 -89.69 -0.69 7.21 16 34 H 0.10 1.49 7.44 -2.39 -0.02 1.48 16 35 H 0.06 0.77 8.05 -2.39 -0.02 0.75 16 36 H 0.38 7.34 9.05 -74.06 -0.67 6.67 16 37 H 0.07 1.90 7.66 -2.39 -0.02 1.88 16 38 H 0.07 1.71 7.63 -2.38 -0.02 1.70 16 39 H 0.13 4.60 6.27 -2.91 -0.02 4.58 16 40 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.29 13.92 8.30 -92.71 -0.77 13.16 16 42 H 0.11 6.20 6.16 -2.91 -0.02 6.18 16 43 H 0.10 4.96 8.06 -2.91 -0.02 4.94 16 44 H 0.20 0.69 8.06 -2.91 -0.02 0.66 16 45 H 0.26 -0.66 8.06 -2.91 -0.02 -0.69 16 Total: -1.00 -71.92 380.52 0.91 -71.01 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.32 Total: 35.60 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 4.53 Total: -48.14 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -3.42 Total: -70.03 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.91 Total: -29.20 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -71.92 0.91 -71.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567026486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.739 kcal (2) G-P(sol) polarization free energy of solvation -71.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds