Wall clock time and date at job start Tue Mar 31 2020 17:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 108.01859 * 2 1 4 4 C 1.53868 * 108.00945 * 243.19026 * 2 1 3 5 5 O 1.44958 * 110.70459 * 197.04567 * 4 2 1 6 6 C 1.39717 * 115.12371 * 320.77097 * 5 4 2 7 7 C 1.52683 * 106.09307 * 98.22572 * 6 5 4 8 8 C 1.46921 * 113.61515 * 271.72158 * 7 6 5 9 9 N 1.43759 * 108.28079 * 117.05107 * 2 1 3 10 10 C 1.34771 * 120.42792 * 29.34719 * 9 2 1 11 11 O 1.21362 * 120.00229 * 5.83038 * 10 9 2 12 12 C 1.49355 * 120.00214 * 185.82557 * 10 9 2 13 13 O 1.21381 * 119.99602 * 6.29122 * 12 10 9 14 14 N 1.34772 * 120.00385 * 186.29223 * 12 10 9 15 15 C 1.39746 * 120.00334 * 174.82980 * 14 12 10 16 16 C 1.39339 * 119.95098 * 325.14689 * 15 14 12 17 17 C 1.38467 * 120.42357 * 179.97438 * 16 15 14 18 18 C 1.37691 * 120.32880 * 359.78377 * 17 16 15 19 19 C 1.40746 * 119.89327 * 0.46828 * 18 17 16 20 20 C 1.41416 * 120.20644 * 179.78938 * 19 18 17 21 21 H 1.08001 * 119.99751 * 146.80850 * 20 19 18 22 22 C 1.39931 * 119.99976 * 326.53200 * 20 19 18 23 23 N 1.30827 * 120.00012 * 0.47481 * 22 20 19 24 24 Si 1.86797 * 120.00002 * 180.47745 * 22 20 19 25 25 H 1.48498 * 109.47487 * 59.99868 * 24 22 20 26 26 H 1.48503 * 109.46952 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47001 * 299.99615 * 24 22 20 28 28 C 1.38303 * 119.95260 * 145.16410 * 15 14 12 29 29 H 1.09005 * 109.47223 * 290.92056 * 1 2 3 30 30 H 1.08997 * 109.47028 * 50.92552 * 1 2 3 31 31 H 1.09005 * 109.46879 * 170.92499 * 1 2 3 32 32 H 1.09004 * 109.31614 * 76.69089 * 4 2 1 33 33 H 1.09011 * 109.15451 * 317.29656 * 4 2 1 34 34 H 1.09001 * 110.12023 * 339.08138 * 6 5 4 35 35 H 1.08999 * 110.22126 * 217.42098 * 6 5 4 36 36 H 1.08991 * 108.65625 * 150.64758 * 7 6 5 37 37 H 1.09008 * 108.65195 * 32.78571 * 7 6 5 38 38 H 1.08997 * 109.87099 * 298.49125 * 8 7 6 39 39 H 1.09001 * 109.86828 * 177.43756 * 8 7 6 40 40 H 0.97003 * 120.00022 * 354.82831 * 14 12 10 41 41 H 1.08007 * 119.78759 * 0.02562 * 16 15 14 42 42 H 1.08002 * 119.83667 * 180.02562 * 17 16 15 43 43 H 1.08002 * 120.05755 * 180.23209 * 18 17 16 44 44 H 0.97005 * 120.00103 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.16413 * 359.96365 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8671 1.0365 0.0000 4 6 2.0056 -0.6600 -1.3060 5 8 3.3970 -1.0538 -1.2040 6 6 4.2210 -0.1509 -0.5273 7 6 4.3511 -0.6829 0.8979 8 6 3.2963 -0.2060 1.8027 9 7 1.9809 -0.6208 1.2157 10 6 1.2331 -1.5673 1.8169 11 8 0.2250 -1.9765 1.2791 12 6 1.6451 -2.1127 3.1448 13 8 2.5869 -1.6252 3.7354 14 7 0.9712 -3.1460 3.6875 15 6 1.4210 -3.7264 4.8765 16 6 2.7876 -3.8179 5.1324 17 6 3.2441 -4.3906 6.3076 18 6 2.3515 -4.8723 7.2388 19 6 0.9682 -4.7916 6.9919 20 6 0.0458 -5.2882 7.9417 21 1 -0.9131 -4.8070 8.0661 22 6 0.3730 -6.4067 8.7164 23 7 1.5360 -6.9873 8.5685 24 14 -0.8508 -7.0708 9.9617 25 1 -2.0994 -7.4704 9.2642 26 1 -0.2671 -8.2512 10.6482 27 1 -1.1584 -6.0183 10.9632 28 6 0.5091 -4.2093 5.7973 29 1 -0.3634 0.3670 0.9600 30 1 -0.3633 0.6478 -0.7978 31 1 -0.3633 -1.0149 -0.1621 32 1 1.8919 0.0458 -2.1289 33 1 1.3966 -1.5423 -1.5034 34 1 3.7645 0.8389 -0.5179 35 1 5.2012 -0.1067 -1.0020 36 1 5.3179 -0.3768 1.2974 37 1 4.3186 -1.7720 0.8678 38 1 3.3402 0.8801 1.8831 39 1 3.4212 -0.6567 2.7873 40 1 0.1738 -3.4869 3.2528 41 1 3.4954 -3.4390 4.4099 42 1 4.3054 -4.4563 6.4964 43 1 2.7123 -5.3147 8.1556 44 1 1.7627 -7.7628 9.1052 45 1 -0.5505 -4.1387 5.6002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590783983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:08 Heat of formation + Delta-G solvation = -51.944109 kcal Electronic energy + Delta-G solvation = -28841.835606 eV Core-core repulsion = 24825.866796 eV Total energy + Delta-G solvation = -4015.968810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.33610 -39.63885 -38.40878 -37.35190 -35.86410 -34.50072 -33.98236 -33.08263 -30.58386 -29.89752 -28.56167 -27.26699 -25.43939 -25.36725 -25.01567 -22.50273 -21.54720 -21.08595 -20.38392 -19.46602 -17.72990 -17.67360 -17.24296 -16.51459 -16.06944 -15.93543 -15.60840 -15.55457 -15.06827 -14.90316 -14.63104 -14.56040 -14.09788 -13.52680 -13.22301 -13.17035 -12.94924 -12.87395 -12.56438 -12.29648 -12.17046 -12.02395 -11.85157 -11.75815 -11.47987 -11.30538 -11.20258 -10.82623 -10.68023 -10.61385 -10.33621 -10.08384 -9.89309 -9.73461 -9.28903 -9.14507 -8.93729 -8.78055 -7.49887 -7.01402 -6.66284 -4.45560 1.41658 2.30649 2.77063 2.80531 3.07283 3.09747 3.17685 3.38663 3.53205 3.64060 3.94791 4.33527 4.43720 4.62186 4.66181 4.72732 4.88296 4.94348 5.00512 5.13193 5.30437 5.33372 5.49104 5.53360 5.57857 5.70791 5.76841 5.90738 5.99072 6.09030 6.19012 6.38487 6.44045 6.65552 6.78307 6.84936 6.95813 6.98255 7.08657 7.23289 7.44015 7.47026 7.69433 7.90278 7.98834 8.02692 8.19309 8.33971 8.59381 8.87213 8.88993 10.25655 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026504 B = 0.002566 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.175181 B =10910.943172 C =11593.768311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 H 0.080 0.920 4 C 0.050 3.950 5 O -0.382 6.382 6 C 0.063 3.937 7 C -0.171 4.171 8 C 0.053 3.947 9 N -0.574 5.574 10 C 0.515 3.485 11 O -0.517 6.517 12 C 0.502 3.498 13 O -0.497 6.497 14 N -0.626 5.626 15 C 0.135 3.865 16 C -0.212 4.212 17 C -0.101 4.101 18 C -0.149 4.149 19 C 0.117 3.883 20 C -0.465 4.465 21 H 0.076 0.924 22 C 0.072 3.928 23 N -0.811 5.811 24 Si 0.916 3.084 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.227 4.227 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.168 0.832 40 H 0.413 0.587 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.279 0.721 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 12.407 -14.912 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.003 3.997 3 H 0.098 0.902 4 C -0.027 4.027 5 O -0.301 6.301 6 C -0.014 4.014 7 C -0.209 4.209 8 C -0.066 4.066 9 N -0.308 5.308 10 C 0.299 3.701 11 O -0.393 6.393 12 C 0.284 3.716 13 O -0.375 6.375 14 N -0.269 5.269 15 C 0.044 3.956 16 C -0.233 4.233 17 C -0.120 4.120 18 C -0.169 4.169 19 C 0.115 3.885 20 C -0.496 4.496 21 H 0.094 0.906 22 C -0.144 4.144 23 N -0.437 5.437 24 Si 0.740 3.260 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.190 1.190 28 C -0.248 4.248 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.184 0.816 40 H 0.250 0.750 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.147 0.853 44 H 0.090 0.910 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.821 12.164 -14.788 19.355 hybrid contribution -0.908 -0.143 0.238 0.949 sum 1.914 12.021 -14.550 18.970 Atomic orbital electron populations 1.22460 0.92727 1.05401 1.02019 1.21301 0.96935 0.96499 0.85013 0.90178 1.23738 0.82472 1.01082 0.95400 1.87680 1.18495 1.46537 1.77371 1.22112 0.94797 0.92586 0.91922 1.21527 0.99889 1.03402 0.96098 1.22872 0.79375 1.01224 1.03108 1.47974 1.21711 1.38093 1.22994 1.20151 0.83785 0.80080 0.86131 1.90669 1.25787 1.57862 1.65030 1.20046 0.83988 0.81196 0.86369 1.90278 1.27907 1.57722 1.61598 1.43199 1.28967 1.30751 1.24024 1.17453 0.93565 0.99183 0.85408 1.20332 0.92593 1.09960 1.00394 1.20643 0.97948 0.99063 0.94391 1.21647 0.93109 1.02137 1.00001 1.17413 0.92667 0.88462 0.90006 1.19459 1.02068 1.11100 1.16995 0.90612 1.25852 0.95770 0.96316 0.96414 1.69740 1.20427 1.18204 1.35375 0.86252 0.80789 0.78620 0.80302 1.19106 1.20397 1.19021 1.20874 0.96680 1.12299 0.94944 0.92255 0.92617 0.88024 0.91498 0.88728 0.92863 0.89736 0.90089 0.90459 0.91251 0.81591 0.75023 0.88049 0.88701 0.85336 0.90975 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 7.68 37.15 0.29 -1.44 16 2 C 0.11 1.09 2.24 -68.94 -0.15 0.93 16 3 H 0.08 0.67 7.07 -51.93 -0.37 0.30 16 4 C 0.05 0.49 6.59 37.61 0.25 0.74 16 5 O -0.38 -4.41 10.19 -32.16 -0.33 -4.74 16 6 C 0.06 0.57 6.46 37.00 0.24 0.81 16 7 C -0.17 -1.74 5.41 -29.81 -0.16 -1.90 16 8 C 0.05 0.59 5.92 -5.06 -0.03 0.56 16 9 N -0.57 -7.13 2.67 -168.68 -0.45 -7.58 16 10 C 0.52 7.71 7.26 -11.63 -0.08 7.63 16 11 O -0.52 -8.09 13.01 5.49 0.07 -8.01 16 12 C 0.50 8.61 7.51 -11.63 -0.09 8.52 16 13 O -0.50 -9.11 10.81 5.47 0.06 -9.05 16 14 N -0.63 -11.42 5.32 -10.34 -0.05 -11.47 16 15 C 0.13 2.96 6.24 -83.82 -0.52 2.44 16 16 C -0.21 -4.76 8.66 -39.09 -0.34 -5.10 16 17 C -0.10 -2.35 10.01 -39.70 -0.40 -2.75 16 18 C -0.15 -3.79 8.66 -38.83 -0.34 -4.13 16 19 C 0.12 3.05 5.55 -106.85 -0.59 2.45 16 20 C -0.47 -12.08 9.05 -37.74 -0.34 -12.42 16 21 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 22 C 0.07 1.78 5.39 -17.35 -0.09 1.69 16 23 N -0.81 -20.66 10.65 55.55 0.59 -20.07 16 24 Si 0.92 18.60 29.56 -169.99 -5.02 13.58 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.23 -5.35 9.71 -38.67 -0.38 -5.73 16 29 H 0.06 0.68 7.88 -51.93 -0.41 0.27 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 1.23 5.63 -51.93 -0.29 0.94 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.99 7.85 -51.92 -0.41 0.58 16 34 H 0.05 0.40 6.34 -51.93 -0.33 0.07 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.98 7.96 -51.92 -0.41 0.56 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.17 2.30 3.82 -56.75 -0.22 2.08 16 40 H 0.41 6.74 8.30 -40.82 -0.34 6.40 16 41 H 0.10 2.17 6.51 -52.48 -0.34 1.83 16 42 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 43 H 0.13 3.38 6.17 -52.49 -0.32 3.06 16 44 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 45 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 356.34 15.07 5.37 5.37 Total: -1.00 -28.41 356.34 -8.45 -36.87 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -5.94 Total: 12.80 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.74 Total: -7.69 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.09 Total: -39.12 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.20 Total: -21.80 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.41 -8.45 -36.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590783983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.075 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds