Wall clock time and date at job start Tue Mar 31 2020 17:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 108.01859 * 2 1 4 4 C 1.53868 * 108.00945 * 243.19026 * 2 1 3 5 5 O 1.44958 * 110.70459 * 197.04567 * 4 2 1 6 6 C 1.39717 * 115.12371 * 320.77097 * 5 4 2 7 7 C 1.52683 * 106.09307 * 98.22572 * 6 5 4 8 8 C 1.46921 * 113.61515 * 271.72158 * 7 6 5 9 9 N 1.43759 * 108.28079 * 117.05107 * 2 1 3 10 10 C 1.34771 * 120.42792 * 29.34719 * 9 2 1 11 11 O 1.21362 * 120.00229 * 5.83038 * 10 9 2 12 12 C 1.49355 * 120.00214 * 185.82557 * 10 9 2 13 13 O 1.21381 * 119.99602 * 6.29122 * 12 10 9 14 14 N 1.34772 * 120.00385 * 186.29223 * 12 10 9 15 15 C 1.39746 * 120.00334 * 174.82980 * 14 12 10 16 16 C 1.39339 * 119.95098 * 325.14689 * 15 14 12 17 17 C 1.38467 * 120.42357 * 179.97438 * 16 15 14 18 18 C 1.37691 * 120.32880 * 359.78377 * 17 16 15 19 19 C 1.40746 * 119.89327 * 0.46828 * 18 17 16 20 20 C 1.41416 * 120.20644 * 179.78938 * 19 18 17 21 21 H 1.08001 * 119.99751 * 146.80850 * 20 19 18 22 22 C 1.39931 * 119.99976 * 326.53200 * 20 19 18 23 23 N 1.30827 * 120.00012 * 0.47481 * 22 20 19 24 24 Si 1.86797 * 120.00002 * 180.47745 * 22 20 19 25 25 H 1.48498 * 109.47487 * 59.99868 * 24 22 20 26 26 H 1.48503 * 109.46952 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47001 * 299.99615 * 24 22 20 28 28 C 1.38303 * 119.95260 * 145.16410 * 15 14 12 29 29 H 1.09005 * 109.47223 * 290.92056 * 1 2 3 30 30 H 1.08997 * 109.47028 * 50.92552 * 1 2 3 31 31 H 1.09005 * 109.46879 * 170.92499 * 1 2 3 32 32 H 1.09004 * 109.31614 * 76.69089 * 4 2 1 33 33 H 1.09011 * 109.15451 * 317.29656 * 4 2 1 34 34 H 1.09001 * 110.12023 * 339.08138 * 6 5 4 35 35 H 1.08999 * 110.22126 * 217.42098 * 6 5 4 36 36 H 1.08991 * 108.65625 * 150.64758 * 7 6 5 37 37 H 1.09008 * 108.65195 * 32.78571 * 7 6 5 38 38 H 1.08997 * 109.87099 * 298.49125 * 8 7 6 39 39 H 1.09001 * 109.86828 * 177.43756 * 8 7 6 40 40 H 0.97003 * 120.00022 * 354.82831 * 14 12 10 41 41 H 1.08007 * 119.78759 * 0.02562 * 16 15 14 42 42 H 1.08002 * 119.83667 * 180.02562 * 17 16 15 43 43 H 1.08002 * 120.05755 * 180.23209 * 18 17 16 44 44 H 0.97005 * 120.00103 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.16413 * 359.96365 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8671 1.0365 0.0000 4 6 2.0056 -0.6600 -1.3060 5 8 3.3970 -1.0538 -1.2040 6 6 4.2210 -0.1509 -0.5273 7 6 4.3511 -0.6829 0.8979 8 6 3.2963 -0.2060 1.8027 9 7 1.9809 -0.6208 1.2157 10 6 1.2331 -1.5673 1.8169 11 8 0.2250 -1.9765 1.2791 12 6 1.6451 -2.1127 3.1448 13 8 2.5869 -1.6252 3.7354 14 7 0.9712 -3.1460 3.6875 15 6 1.4210 -3.7264 4.8765 16 6 2.7876 -3.8179 5.1324 17 6 3.2441 -4.3906 6.3076 18 6 2.3515 -4.8723 7.2388 19 6 0.9682 -4.7916 6.9919 20 6 0.0458 -5.2882 7.9417 21 1 -0.9131 -4.8070 8.0661 22 6 0.3730 -6.4067 8.7164 23 7 1.5360 -6.9873 8.5685 24 14 -0.8508 -7.0708 9.9617 25 1 -2.0994 -7.4704 9.2642 26 1 -0.2671 -8.2512 10.6482 27 1 -1.1584 -6.0183 10.9632 28 6 0.5091 -4.2093 5.7973 29 1 -0.3634 0.3670 0.9600 30 1 -0.3633 0.6478 -0.7978 31 1 -0.3633 -1.0149 -0.1621 32 1 1.8919 0.0458 -2.1289 33 1 1.3966 -1.5423 -1.5034 34 1 3.7645 0.8389 -0.5179 35 1 5.2012 -0.1067 -1.0020 36 1 5.3179 -0.3768 1.2974 37 1 4.3186 -1.7720 0.8678 38 1 3.3402 0.8801 1.8831 39 1 3.4212 -0.6567 2.7873 40 1 0.1738 -3.4869 3.2528 41 1 3.4954 -3.4390 4.4099 42 1 4.3054 -4.4563 6.4964 43 1 2.7123 -5.3147 8.1556 44 1 1.7627 -7.7628 9.1052 45 1 -0.5505 -4.1387 5.6002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590783983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:07 Heat of formation + Delta-G solvation = -69.317804 kcal Electronic energy + Delta-G solvation = -28842.588986 eV Core-core repulsion = 24825.866796 eV Total energy + Delta-G solvation = -4016.722190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.48783 -40.89514 -39.50427 -39.00161 -36.99013 -36.01638 -34.84336 -34.81559 -31.78960 -31.51969 -30.26666 -28.05053 -27.23615 -26.32534 -26.22288 -23.72094 -22.99461 -22.41505 -21.83395 -20.75886 -19.44491 -18.77471 -18.25763 -17.61916 -17.41754 -17.03378 -16.85355 -16.83337 -16.55463 -16.31720 -16.02202 -15.57672 -15.40837 -14.81951 -14.74922 -14.45696 -14.12518 -13.96942 -13.89521 -13.65820 -13.51841 -13.04370 -13.01167 -12.94775 -12.85874 -12.56580 -12.52870 -12.35487 -12.23516 -11.88550 -11.66870 -11.59985 -11.27790 -11.10431 -10.90817 -10.56542 -10.02146 -9.88449 -9.37857 -8.81865 -8.51643 -6.41712 0.08943 0.94701 0.97834 1.24398 1.41254 1.52245 1.54312 2.05715 2.24134 2.31527 2.79447 2.91812 3.12242 3.63247 3.66516 3.76928 3.93804 4.13436 4.17345 4.29498 4.38053 4.39576 4.53245 4.55730 4.63169 4.71604 4.76563 4.77863 4.89156 4.98736 5.02512 5.05818 5.09452 5.17355 5.23939 5.26438 5.34793 5.54761 5.69941 5.73413 5.91479 6.03080 6.08391 6.17843 6.35592 6.39518 6.65302 6.70430 6.87873 6.94749 7.01396 8.41722 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026504 B = 0.002566 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.175181 B =10910.943172 C =11593.768311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 H 0.111 0.889 4 C 0.051 3.949 5 O -0.407 6.407 6 C 0.062 3.938 7 C -0.167 4.167 8 C 0.052 3.948 9 N -0.566 5.566 10 C 0.516 3.484 11 O -0.528 6.528 12 C 0.500 3.500 13 O -0.509 6.509 14 N -0.628 5.628 15 C 0.146 3.854 16 C -0.217 4.217 17 C -0.100 4.100 18 C -0.176 4.176 19 C 0.090 3.910 20 C -0.499 4.499 21 H 0.076 0.924 22 C 0.031 3.969 23 N -0.839 5.839 24 Si 0.987 3.013 25 H -0.262 1.262 26 H -0.270 1.270 27 H -0.260 1.260 28 C -0.239 4.239 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.099 0.901 39 H 0.143 0.857 40 H 0.422 0.578 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.285 0.715 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 14.214 -16.471 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.003 4.003 3 H 0.129 0.871 4 C -0.026 4.026 5 O -0.327 6.327 6 C -0.014 4.014 7 C -0.205 4.205 8 C -0.066 4.066 9 N -0.299 5.299 10 C 0.298 3.702 11 O -0.406 6.406 12 C 0.284 3.716 13 O -0.386 6.386 14 N -0.274 5.274 15 C 0.054 3.946 16 C -0.238 4.238 17 C -0.119 4.119 18 C -0.195 4.195 19 C 0.088 3.912 20 C -0.529 4.529 21 H 0.094 0.906 22 C -0.182 4.182 23 N -0.466 5.466 24 Si 0.808 3.192 25 H -0.186 1.186 26 H -0.194 1.194 27 H -0.185 1.185 28 C -0.260 4.260 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.117 0.883 39 H 0.159 0.841 40 H 0.260 0.740 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.096 0.904 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.917 14.010 -16.389 21.758 hybrid contribution -0.836 -0.587 0.589 1.179 sum 2.081 13.423 -15.800 20.837 Atomic orbital electron populations 1.22354 0.92834 1.04593 1.02258 1.21591 0.96890 0.97740 0.84054 0.87142 1.23810 0.81635 1.01244 0.95904 1.87662 1.19351 1.47965 1.77677 1.22263 0.95515 0.93047 0.90619 1.21490 1.00428 1.01407 0.97219 1.22832 0.79071 1.02719 1.02000 1.48120 1.21541 1.36763 1.23501 1.19735 0.84204 0.80977 0.85317 1.90692 1.26364 1.58548 1.65009 1.20602 0.83334 0.80509 0.87175 1.90326 1.28137 1.57906 1.62259 1.43145 1.29664 1.31414 1.23137 1.17458 0.93230 0.97843 0.86089 1.20514 0.93117 1.09769 1.00374 1.20881 0.98879 0.98053 0.94061 1.21574 0.93532 1.04063 1.00379 1.17760 0.93184 0.89219 0.91075 1.19735 1.02399 1.12352 1.18440 0.90583 1.26720 0.97578 0.96037 0.97880 1.69822 1.21978 1.18628 1.36199 0.85168 0.78242 0.78109 0.77648 1.18640 1.19407 1.18470 1.20998 0.97524 1.12648 0.94873 0.93703 0.89664 0.90267 0.88285 0.90241 0.90607 0.88127 0.88151 0.93558 0.88321 0.84079 0.74031 0.86982 0.86494 0.86903 0.90389 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 7.68 71.98 0.55 -2.43 16 2 C 0.10 1.74 2.24 45.79 0.10 1.85 16 3 H 0.11 1.31 7.07 -2.39 -0.02 1.29 16 4 C 0.05 0.85 6.59 72.27 0.48 1.32 16 5 O -0.41 -8.43 10.19 -137.98 -1.41 -9.83 16 6 C 0.06 0.92 6.46 71.88 0.46 1.38 16 7 C -0.17 -3.05 5.41 28.60 0.15 -2.89 16 8 C 0.05 1.06 5.92 83.83 0.50 1.56 16 9 N -0.57 -13.06 2.67 -805.93 -2.15 -15.21 16 10 C 0.52 15.12 7.26 87.24 0.63 15.76 16 11 O -0.53 -16.38 13.01 -3.28 -0.04 -16.42 16 12 C 0.50 17.11 7.51 87.24 0.65 17.77 16 13 O -0.51 -18.53 10.81 -3.34 -0.04 -18.56 16 14 N -0.63 -23.08 5.32 -304.98 -1.62 -24.70 16 15 C 0.15 6.49 6.24 38.16 0.24 6.73 16 16 C -0.22 -9.81 8.66 22.59 0.20 -9.61 16 17 C -0.10 -4.70 10.01 22.19 0.22 -4.48 16 18 C -0.18 -9.25 8.66 22.75 0.20 -9.06 16 19 C 0.09 4.86 5.55 -21.31 -0.12 4.74 16 20 C -0.50 -26.69 9.05 23.46 0.21 -26.48 16 21 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 22 C 0.03 1.53 5.39 85.25 0.46 1.99 16 23 N -0.84 -43.84 10.65 21.82 0.23 -43.60 16 24 Si 0.99 38.36 29.56 68.60 2.03 40.39 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 27 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 28 C -0.24 -11.58 9.71 22.86 0.22 -11.36 16 29 H 0.04 0.95 7.88 -2.38 -0.02 0.93 16 30 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.84 5.63 -2.38 -0.01 1.83 16 32 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.08 1.55 7.85 -2.38 -0.02 1.53 16 34 H 0.08 0.78 6.34 -2.39 -0.02 0.76 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.14 7.96 -2.38 -0.02 1.12 16 38 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.14 3.76 3.82 -78.75 -0.30 3.45 16 40 H 0.42 13.89 8.30 -92.71 -0.77 13.12 16 41 H 0.11 4.79 6.51 -2.91 -0.02 4.77 16 42 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 43 H 0.11 6.22 6.17 -2.91 -0.02 6.20 16 44 H 0.29 13.60 8.30 -92.70 -0.77 12.83 16 45 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -63.44 356.34 2.14 -61.30 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.02 Total: 39.86 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.16 Total: -13.21 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -3.54 Total: -83.52 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -1.49 Total: -44.82 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -63.44 2.14 -61.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590783983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.014 kcal (2) G-P(sol) polarization free energy of solvation -63.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds