Wall clock time and date at job start Tue Mar 31 2020 17:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.45016 * 2 1 4 4 C 1.54288 * 109.40889 * 119.64118 * 2 1 3 5 5 O 1.38010 * 109.45503 * 52.30759 * 4 2 1 6 6 C 1.42152 * 119.43492 * 63.36945 * 5 4 2 7 7 C 1.51543 * 108.75437 * 272.76426 * 6 5 4 8 8 C 1.53566 * 109.57905 * 91.40281 * 7 6 5 9 9 N 1.45120 * 109.46193 * 240.02930 * 2 1 3 10 10 C 1.34777 * 118.75690 * 149.28417 * 9 2 1 11 11 O 1.21358 * 120.00150 * 185.51326 * 10 9 2 12 12 C 1.49356 * 120.00045 * 5.51171 * 10 9 2 13 13 O 1.21374 * 120.00110 * 5.98184 * 12 10 9 14 14 N 1.34774 * 120.00086 * 185.97588 * 12 10 9 15 15 C 1.39739 * 120.00171 * 184.51214 * 14 12 10 16 16 C 1.39347 * 119.95175 * 324.37645 * 15 14 12 17 17 C 1.38471 * 120.42484 * 179.97438 * 16 15 14 18 18 C 1.37701 * 120.32749 * 0.02562 * 17 16 15 19 19 C 1.40743 * 119.89361 * 359.97438 * 18 17 16 20 20 C 1.41413 * 120.20611 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99820 * 33.80765 * 20 19 18 22 22 C 1.39926 * 120.00133 * 213.81380 * 20 19 18 23 23 N 1.30828 * 120.00183 * 357.49456 * 22 20 19 24 24 Si 1.86801 * 119.99995 * 177.49422 * 22 20 19 25 25 H 1.48506 * 109.47254 * 59.99771 * 24 22 20 26 26 H 1.48496 * 109.47101 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47282 * 299.99998 * 24 22 20 28 28 C 1.38306 * 119.95912 * 144.10238 * 15 14 12 29 29 H 1.09000 * 109.47498 * 199.60288 * 1 2 3 30 30 H 1.08994 * 109.47497 * 319.60888 * 1 2 3 31 31 H 1.09006 * 109.47106 * 79.60636 * 1 2 3 32 32 H 1.09007 * 109.53383 * 292.28133 * 4 2 1 33 33 H 1.08995 * 109.42676 * 172.27421 * 4 2 1 34 34 H 1.09006 * 109.59065 * 152.98655 * 6 5 4 35 35 H 1.08997 * 109.71692 * 32.61885 * 6 5 4 36 36 H 1.08993 * 109.44988 * 331.36737 * 7 6 5 37 37 H 1.09003 * 109.45120 * 211.43364 * 7 6 5 38 38 H 1.09002 * 109.16610 * 199.62617 * 8 7 6 39 39 H 1.09000 * 109.17049 * 80.42302 * 8 7 6 40 40 H 0.97001 * 120.00342 * 4.78876 * 14 12 10 41 41 H 1.08002 * 119.79144 * 359.97438 * 16 15 14 42 42 H 1.08002 * 119.83856 * 180.02562 * 17 16 15 43 43 H 1.08001 * 120.05227 * 179.97438 * 18 17 16 44 44 H 0.97004 * 120.00378 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.15546 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0427 -0.7197 1.2648 5 8 1.4450 -1.9598 1.3621 6 6 1.6879 -2.9334 0.3552 7 6 0.6853 -2.7374 -0.7641 8 6 1.2717 -1.7893 -1.8202 9 7 2.0135 -0.6835 -1.1853 10 6 3.1872 -0.2971 -1.7232 11 8 3.5647 -0.7831 -2.7692 12 6 4.0235 0.7294 -1.0321 13 8 3.7014 1.1360 0.0653 14 7 5.1358 1.2042 -1.6268 15 6 5.9688 2.0933 -0.9424 16 6 5.4180 3.0391 -0.0800 17 6 6.2343 3.9244 0.6035 18 6 7.6006 3.8801 0.4377 19 6 8.1715 2.9304 -0.4301 20 6 9.5738 2.8787 -0.6049 21 1 10.2299 3.1113 0.2210 22 6 10.1114 2.5264 -1.8477 23 7 9.3177 2.1972 -2.8343 24 14 11.9625 2.5260 -2.0984 25 1 12.5901 1.5692 -1.1518 26 1 12.2732 2.1184 -3.4922 27 1 12.4960 3.8895 -1.8504 28 6 7.3393 2.0297 -1.1177 29 1 -0.3634 -0.9681 0.3448 30 1 -0.3634 0.7826 0.6659 31 1 -0.3633 0.1854 -1.0109 32 1 1.7964 -0.1275 2.1462 33 1 3.1238 -0.8415 1.1994 34 1 1.5740 -3.9320 0.7772 35 1 2.6988 -2.8147 -0.0348 36 1 -0.2311 -2.3078 -0.3594 37 1 0.4622 -3.7000 -1.2243 38 1 0.4609 -1.3776 -2.4212 39 1 1.9475 -2.3484 -2.4674 40 1 5.3561 0.9320 -2.5314 41 1 4.3475 3.0819 0.0563 42 1 5.7973 4.6534 1.2699 43 1 8.2331 4.5731 0.9727 44 1 9.6904 1.9526 -3.6958 45 1 7.7676 1.2944 -1.7828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590783984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:12 Heat of formation + Delta-G solvation = -64.271921 kcal Electronic energy + Delta-G solvation = -29261.816323 eV Core-core repulsion = 25245.312938 eV Total energy + Delta-G solvation = -4016.503384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.32428 -39.60327 -38.44133 -37.25567 -35.90229 -34.39529 -33.45259 -33.25005 -30.72636 -29.60289 -28.78396 -27.16491 -26.28335 -25.31505 -24.48325 -21.78364 -21.54219 -21.25305 -20.20090 -19.53052 -17.84025 -17.53524 -17.12158 -16.59839 -16.35013 -16.05688 -15.72218 -15.43463 -15.01321 -14.70785 -14.54275 -14.31102 -13.91427 -13.41623 -13.24739 -13.17932 -13.01198 -12.81241 -12.50262 -12.44453 -12.24316 -11.83028 -11.74581 -11.53803 -11.33308 -11.14823 -11.09730 -10.95644 -10.79066 -10.62198 -10.49160 -10.02843 -9.83679 -9.77052 -9.37063 -9.21675 -8.94351 -8.74508 -7.34992 -7.13495 -6.63595 -4.45644 1.47728 2.37541 2.72140 2.87183 3.07314 3.09615 3.18372 3.42657 3.62839 3.66654 3.94964 4.48453 4.55188 4.62391 4.69240 4.79459 4.89556 4.96558 5.12887 5.26320 5.39847 5.49939 5.51891 5.54716 5.56357 5.64136 5.75439 5.86750 5.91894 6.06646 6.17139 6.34402 6.51911 6.55148 6.72120 6.87997 6.99357 7.02230 7.25040 7.44485 7.48840 7.49881 7.73776 7.82403 7.97941 8.04741 8.21462 8.35632 8.60479 8.86184 8.88712 10.25533 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.002964 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.468474 B = 9444.364442 C =10068.712656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.082 3.918 3 H 0.129 0.871 4 C 0.073 3.927 5 O -0.389 6.389 6 C 0.072 3.928 7 C -0.173 4.173 8 C 0.108 3.892 9 N -0.581 5.581 10 C 0.503 3.497 11 O -0.521 6.521 12 C 0.495 3.505 13 O -0.503 6.503 14 N -0.625 5.625 15 C 0.126 3.874 16 C -0.214 4.214 17 C -0.094 4.094 18 C -0.213 4.213 19 C 0.114 3.886 20 C -0.465 4.465 21 H 0.077 0.923 22 C 0.071 3.929 23 N -0.815 5.815 24 Si 0.916 3.084 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.266 1.266 28 C -0.161 4.161 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.415 0.585 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.279 0.721 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.692 -7.960 1.954 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 H 0.146 0.854 4 C -0.005 4.005 5 O -0.307 6.307 6 C -0.005 4.005 7 C -0.211 4.211 8 C -0.013 4.013 9 N -0.315 5.315 10 C 0.286 3.714 11 O -0.396 6.396 12 C 0.277 3.723 13 O -0.380 6.380 14 N -0.269 5.269 15 C 0.035 3.965 16 C -0.235 4.235 17 C -0.113 4.113 18 C -0.233 4.233 19 C 0.111 3.889 20 C -0.496 4.496 21 H 0.095 0.905 22 C -0.144 4.144 23 N -0.442 5.442 24 Si 0.741 3.259 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.182 4.182 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.251 0.749 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.840 -8.085 2.043 17.902 hybrid contribution 1.125 0.002 -1.058 1.544 sum -14.716 -8.083 0.985 16.819 Atomic orbital electron populations 1.22305 0.94221 1.03652 1.02201 1.22634 0.95170 0.99863 0.84411 0.85353 1.22399 0.97032 0.83538 0.97519 1.86245 1.72352 1.23323 1.48799 1.22177 0.97866 0.91881 0.88549 1.22712 1.01031 1.00176 0.97189 1.21852 0.96589 0.87586 0.95282 1.47953 1.20226 1.34441 1.28900 1.20481 0.82112 0.83679 0.85171 1.90745 1.71154 1.55926 1.21821 1.19944 0.82953 0.83053 0.86358 1.90654 1.68712 1.58680 1.19970 1.43186 1.22123 1.43260 1.18290 1.17721 0.89654 0.91451 0.97667 1.20467 0.98651 0.99756 1.04599 1.20454 0.93817 0.98043 0.99011 1.21215 0.93769 1.01729 1.06562 1.17400 0.93390 0.88519 0.89545 1.19469 0.91694 1.41673 0.96787 0.90505 1.25847 1.00383 0.92445 0.95675 1.69711 1.36704 1.34887 1.02881 0.86248 0.82167 0.79615 0.77909 1.19064 1.20429 1.19102 1.21419 0.89090 1.02104 1.05611 0.90439 0.91313 0.92368 0.87493 0.93068 0.89206 0.93072 0.89067 0.89596 0.91194 0.89006 0.74896 0.87417 0.88778 0.88612 0.91037 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 8.22 37.15 0.31 -1.24 16 2 C 0.08 0.98 2.35 -68.00 -0.16 0.82 16 3 H 0.13 1.76 5.34 -51.93 -0.28 1.49 16 4 C 0.07 0.91 5.66 37.83 0.21 1.12 16 5 O -0.39 -4.54 8.92 -26.52 -0.24 -4.77 16 6 C 0.07 0.71 6.37 36.42 0.23 0.94 16 7 C -0.17 -1.39 5.55 -27.17 -0.15 -1.55 16 8 C 0.11 1.10 5.31 -3.20 -0.02 1.08 16 9 N -0.58 -7.39 2.13 -165.73 -0.35 -7.74 16 10 C 0.50 7.95 7.68 -11.63 -0.09 7.86 16 11 O -0.52 -9.09 15.85 5.49 0.09 -9.01 16 12 C 0.50 8.83 7.50 -11.63 -0.09 8.74 16 13 O -0.50 -9.21 9.20 5.48 0.05 -9.16 16 14 N -0.62 -12.20 5.30 -10.34 -0.05 -12.25 16 15 C 0.13 2.88 6.27 -83.82 -0.53 2.36 16 16 C -0.21 -4.78 8.70 -39.08 -0.34 -5.12 16 17 C -0.09 -2.09 10.02 -39.69 -0.40 -2.49 16 18 C -0.21 -5.10 9.79 -38.83 -0.38 -5.48 16 19 C 0.11 2.97 5.55 -106.85 -0.59 2.38 16 20 C -0.47 -12.11 9.05 -37.74 -0.34 -12.45 16 21 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 22 C 0.07 1.77 5.41 -17.35 -0.09 1.67 16 23 N -0.81 -20.63 10.62 55.55 0.59 -20.04 16 24 Si 0.92 18.70 29.56 -169.99 -5.02 13.67 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 28 C -0.16 -4.05 8.58 -38.67 -0.33 -4.38 16 29 H 0.08 0.69 4.31 -51.93 -0.22 0.46 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.52 7.60 -51.93 -0.39 0.12 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.76 7.23 -51.93 -0.38 0.38 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.59 7.41 -51.93 -0.38 0.21 16 36 H 0.09 0.71 5.19 -51.93 -0.27 0.44 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.62 7.80 -51.93 -0.40 0.22 16 39 H 0.09 1.01 7.07 -51.93 -0.37 0.65 16 40 H 0.41 7.65 8.33 -40.82 -0.34 7.31 16 41 H 0.11 2.30 6.25 -52.49 -0.33 1.97 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 45 H 0.13 3.47 6.15 -52.49 -0.32 3.15 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -28.19 352.41 -8.16 -36.35 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -5.77 Total: 13.37 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.76 Total: -5.73 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.18 Total: -40.04 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.10 Total: -22.94 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.19 -8.16 -36.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590783984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.927 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds