Wall clock time and date at job start Tue Mar 31 2020 17:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.45016 * 2 1 4 4 C 1.54288 * 109.40889 * 119.64118 * 2 1 3 5 5 O 1.38010 * 109.45503 * 52.30759 * 4 2 1 6 6 C 1.42152 * 119.43492 * 63.36945 * 5 4 2 7 7 C 1.51543 * 108.75437 * 272.76426 * 6 5 4 8 8 C 1.53566 * 109.57905 * 91.40281 * 7 6 5 9 9 N 1.45120 * 109.46193 * 240.02930 * 2 1 3 10 10 C 1.34777 * 118.75690 * 149.28417 * 9 2 1 11 11 O 1.21358 * 120.00150 * 185.51326 * 10 9 2 12 12 C 1.49356 * 120.00045 * 5.51171 * 10 9 2 13 13 O 1.21374 * 120.00110 * 5.98184 * 12 10 9 14 14 N 1.34774 * 120.00086 * 185.97588 * 12 10 9 15 15 C 1.39739 * 120.00171 * 184.51214 * 14 12 10 16 16 C 1.39347 * 119.95175 * 324.37645 * 15 14 12 17 17 C 1.38471 * 120.42484 * 179.97438 * 16 15 14 18 18 C 1.37701 * 120.32749 * 0.02562 * 17 16 15 19 19 C 1.40743 * 119.89361 * 359.97438 * 18 17 16 20 20 C 1.41413 * 120.20611 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99820 * 33.80765 * 20 19 18 22 22 C 1.39926 * 120.00133 * 213.81380 * 20 19 18 23 23 N 1.30828 * 120.00183 * 357.49456 * 22 20 19 24 24 Si 1.86801 * 119.99995 * 177.49422 * 22 20 19 25 25 H 1.48506 * 109.47254 * 59.99771 * 24 22 20 26 26 H 1.48496 * 109.47101 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47282 * 299.99998 * 24 22 20 28 28 C 1.38306 * 119.95912 * 144.10238 * 15 14 12 29 29 H 1.09000 * 109.47498 * 199.60288 * 1 2 3 30 30 H 1.08994 * 109.47497 * 319.60888 * 1 2 3 31 31 H 1.09006 * 109.47106 * 79.60636 * 1 2 3 32 32 H 1.09007 * 109.53383 * 292.28133 * 4 2 1 33 33 H 1.08995 * 109.42676 * 172.27421 * 4 2 1 34 34 H 1.09006 * 109.59065 * 152.98655 * 6 5 4 35 35 H 1.08997 * 109.71692 * 32.61885 * 6 5 4 36 36 H 1.08993 * 109.44988 * 331.36737 * 7 6 5 37 37 H 1.09003 * 109.45120 * 211.43364 * 7 6 5 38 38 H 1.09002 * 109.16610 * 199.62617 * 8 7 6 39 39 H 1.09000 * 109.17049 * 80.42302 * 8 7 6 40 40 H 0.97001 * 120.00342 * 4.78876 * 14 12 10 41 41 H 1.08002 * 119.79144 * 359.97438 * 16 15 14 42 42 H 1.08002 * 119.83856 * 180.02562 * 17 16 15 43 43 H 1.08001 * 120.05227 * 179.97438 * 18 17 16 44 44 H 0.97004 * 120.00378 * 180.02562 * 23 22 20 45 45 H 1.08001 * 120.15546 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0427 -0.7197 1.2648 5 8 1.4450 -1.9598 1.3621 6 6 1.6879 -2.9334 0.3552 7 6 0.6853 -2.7374 -0.7641 8 6 1.2717 -1.7893 -1.8202 9 7 2.0135 -0.6835 -1.1853 10 6 3.1872 -0.2971 -1.7232 11 8 3.5647 -0.7831 -2.7692 12 6 4.0235 0.7294 -1.0321 13 8 3.7014 1.1360 0.0653 14 7 5.1358 1.2042 -1.6268 15 6 5.9688 2.0933 -0.9424 16 6 5.4180 3.0391 -0.0800 17 6 6.2343 3.9244 0.6035 18 6 7.6006 3.8801 0.4377 19 6 8.1715 2.9304 -0.4301 20 6 9.5738 2.8787 -0.6049 21 1 10.2299 3.1113 0.2210 22 6 10.1114 2.5264 -1.8477 23 7 9.3177 2.1972 -2.8343 24 14 11.9625 2.5260 -2.0984 25 1 12.5901 1.5692 -1.1518 26 1 12.2732 2.1184 -3.4922 27 1 12.4960 3.8895 -1.8504 28 6 7.3393 2.0297 -1.1177 29 1 -0.3634 -0.9681 0.3448 30 1 -0.3634 0.7826 0.6659 31 1 -0.3633 0.1854 -1.0109 32 1 1.7964 -0.1275 2.1462 33 1 3.1238 -0.8415 1.1994 34 1 1.5740 -3.9320 0.7772 35 1 2.6988 -2.8147 -0.0348 36 1 -0.2311 -2.3078 -0.3594 37 1 0.4622 -3.7000 -1.2243 38 1 0.4609 -1.3776 -2.4212 39 1 1.9475 -2.3484 -2.4674 40 1 5.3561 0.9320 -2.5314 41 1 4.3475 3.0819 0.0563 42 1 5.7973 4.6534 1.2699 43 1 8.2331 4.5731 0.9727 44 1 9.6904 1.9526 -3.6958 45 1 7.7676 1.2944 -1.7828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590783984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:11 Heat of formation + Delta-G solvation = -80.570989 kcal Electronic energy + Delta-G solvation = -29262.523103 eV Core-core repulsion = 25245.312938 eV Total energy + Delta-G solvation = -4017.210165 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.54014 -40.89149 -39.72673 -38.92992 -37.03164 -35.97092 -35.07583 -34.27733 -31.69572 -31.46611 -30.50406 -28.13882 -27.27711 -27.10546 -25.77943 -23.20081 -22.97252 -22.41537 -21.66574 -20.85187 -19.33617 -19.05917 -18.26769 -17.68517 -17.52407 -17.33553 -17.07298 -16.72357 -16.63963 -16.43184 -15.78936 -15.54873 -15.20273 -14.77824 -14.60213 -14.39886 -14.21703 -14.02361 -13.96708 -13.59707 -13.40963 -13.27461 -12.99322 -12.81328 -12.66082 -12.62526 -12.38598 -12.35735 -12.12667 -11.88917 -11.82226 -11.64459 -11.41678 -11.09578 -10.93908 -10.67370 -10.37018 -9.80842 -9.24225 -8.93311 -8.47990 -6.41551 0.07524 0.91758 1.05516 1.20880 1.40043 1.50541 1.53287 2.00490 2.23608 2.34227 2.78390 2.79540 3.16671 3.64630 3.71529 3.79008 3.93057 4.04976 4.14805 4.29168 4.40300 4.45619 4.59655 4.64973 4.69934 4.74078 4.75131 4.78654 4.84653 4.93378 4.99055 5.04261 5.11232 5.13873 5.14853 5.21774 5.35746 5.49895 5.67773 5.71620 5.87393 5.97201 6.10744 6.19518 6.39486 6.54463 6.61400 6.64110 6.86284 6.95745 6.99214 8.41249 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.002964 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.468474 B = 9444.364442 C =10068.712656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.080 3.920 3 H 0.111 0.889 4 C 0.079 3.921 5 O -0.392 6.392 6 C 0.064 3.936 7 C -0.162 4.162 8 C 0.101 3.899 9 N -0.567 5.567 10 C 0.505 3.495 11 O -0.542 6.542 12 C 0.495 3.505 13 O -0.506 6.506 14 N -0.631 5.631 15 C 0.132 3.868 16 C -0.218 4.218 17 C -0.089 4.089 18 C -0.228 4.228 19 C 0.085 3.915 20 C -0.500 4.500 21 H 0.077 0.923 22 C 0.030 3.970 23 N -0.841 5.841 24 Si 0.987 3.013 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.261 1.261 28 C -0.185 4.185 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.019 0.981 34 H 0.112 0.888 35 H 0.027 0.973 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.417 0.583 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.106 0.894 44 H 0.284 0.716 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.643 -8.590 2.268 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 H 0.128 0.872 4 C 0.001 3.999 5 O -0.311 6.311 6 C -0.012 4.012 7 C -0.199 4.199 8 C -0.019 4.019 9 N -0.300 5.300 10 C 0.287 3.713 11 O -0.420 6.420 12 C 0.277 3.723 13 O -0.383 6.383 14 N -0.276 5.276 15 C 0.040 3.960 16 C -0.238 4.238 17 C -0.108 4.108 18 C -0.248 4.248 19 C 0.083 3.917 20 C -0.531 4.531 21 H 0.095 0.905 22 C -0.182 4.182 23 N -0.468 5.468 24 Si 0.808 3.192 25 H -0.186 1.186 26 H -0.195 1.195 27 H -0.186 1.186 28 C -0.207 4.207 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.037 0.963 34 H 0.130 0.870 35 H 0.046 0.954 36 H 0.121 0.879 37 H 0.134 0.866 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.254 0.746 41 H 0.138 0.862 42 H 0.146 0.854 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.855 -8.734 2.382 20.019 hybrid contribution 1.566 0.148 -1.088 1.912 sum -16.289 -8.586 1.294 18.459 Atomic orbital electron populations 1.22256 0.91426 1.04673 1.03072 1.22669 0.97272 0.98618 0.83773 0.87175 1.22278 0.95179 0.84293 0.98162 1.86244 1.72001 1.23126 1.49687 1.22400 0.97259 0.92483 0.89088 1.22676 1.00350 1.01079 0.95825 1.22153 0.96616 0.87045 0.96067 1.48109 1.18929 1.34400 1.28581 1.20051 0.82912 0.83354 0.85016 1.90739 1.71898 1.56725 1.22682 1.20381 0.82472 0.83082 0.86333 1.90650 1.68710 1.58791 1.20130 1.43160 1.22521 1.43442 1.18457 1.17774 0.89371 0.91661 0.97242 1.20711 0.99315 0.99454 1.04348 1.20811 0.93137 0.98134 0.98709 1.21406 0.94879 1.01861 1.06673 1.17777 0.94021 0.89395 0.90540 1.19744 0.92132 1.43479 0.97702 0.90507 1.26705 1.05049 0.91549 0.94945 1.69801 1.38615 1.35103 1.03324 0.85178 0.76209 0.79732 0.78099 1.18601 1.19528 1.18564 1.21306 0.90230 1.02551 1.06580 0.89517 0.90138 0.91608 0.86499 0.96266 0.86963 0.95413 0.87939 0.86643 0.89163 0.89981 0.74581 0.86194 0.85386 0.87571 0.90547 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.22 71.98 0.59 -1.85 16 2 C 0.08 1.79 2.35 45.68 0.11 1.90 16 3 H 0.11 2.94 5.34 -2.46 -0.01 2.93 16 4 C 0.08 1.89 5.66 72.42 0.41 2.30 16 5 O -0.39 -8.44 8.92 -117.80 -1.05 -9.49 16 6 C 0.06 1.13 6.37 71.50 0.46 1.59 16 7 C -0.16 -2.07 5.55 30.31 0.17 -1.91 16 8 C 0.10 1.82 5.31 86.38 0.46 2.28 16 9 N -0.57 -13.83 2.13 -796.61 -1.69 -15.53 16 10 C 0.50 16.01 7.68 87.24 0.67 16.68 16 11 O -0.54 -19.14 15.85 -3.27 -0.05 -19.19 16 12 C 0.49 17.93 7.50 87.24 0.65 18.59 16 13 O -0.51 -18.64 9.20 -3.32 -0.03 -18.67 16 14 N -0.63 -25.44 5.30 -304.98 -1.62 -27.05 16 15 C 0.13 6.18 6.27 38.16 0.24 6.42 16 16 C -0.22 -9.70 8.70 22.59 0.20 -9.51 16 17 C -0.09 -3.90 10.02 22.20 0.22 -3.68 16 18 C -0.23 -11.07 9.79 22.76 0.22 -10.85 16 19 C 0.09 4.60 5.55 -21.31 -0.12 4.48 16 20 C -0.50 -26.88 9.05 23.46 0.21 -26.67 16 21 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 22 C 0.03 1.50 5.41 85.25 0.46 1.96 16 23 N -0.84 -43.95 10.62 21.82 0.23 -43.72 16 24 Si 0.99 38.73 29.56 68.60 2.03 40.76 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 27 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 28 C -0.19 -9.72 8.58 22.86 0.20 -9.52 16 29 H 0.09 1.22 4.31 -2.39 -0.01 1.21 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.06 0.95 7.60 -2.38 -0.02 0.93 16 32 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.02 0.58 7.23 -2.39 -0.02 0.56 16 34 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.03 0.63 7.41 -2.39 -0.02 0.61 16 36 H 0.10 1.15 5.19 -2.39 -0.01 1.14 16 37 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 1.32 7.80 -2.39 -0.02 1.30 16 39 H 0.08 1.69 7.07 -2.39 -0.02 1.68 16 40 H 0.42 16.14 8.33 -92.71 -0.77 15.36 16 41 H 0.12 5.02 6.25 -2.91 -0.02 5.00 16 42 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 43 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 44 H 0.28 13.61 8.30 -92.71 -0.77 12.84 16 45 H 0.12 6.38 6.15 -2.91 -0.02 6.36 16 Total: -1.00 -62.74 352.41 3.24 -59.51 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: 0.27 Total: 41.17 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.15 Total: -7.78 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -3.08 Total: -86.29 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -1.13 Total: -47.35 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -62.74 3.24 -59.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590783984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.065 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds