Wall clock time and date at job start Tue Mar 31 2020 16:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47250 * 2 1 4 4 O 1.42902 * 109.47353 * 120.00237 * 2 1 3 5 5 C 1.42903 * 113.99906 * 89.99864 * 4 2 1 6 6 C 1.52998 * 109.46921 * 180.02562 * 5 4 2 7 7 H 1.09002 * 110.53169 * 187.82654 * 6 5 4 8 8 C 1.51582 * 110.43490 * 310.92508 * 6 5 4 9 9 O 1.21243 * 127.15476 * 298.68951 * 8 6 5 10 10 N 1.34759 * 105.68834 * 118.76571 * 8 6 5 11 11 C 1.40214 * 124.18098 * 179.97438 * 10 8 6 12 12 C 1.39240 * 119.94430 * 173.56278 * 11 10 8 13 13 C 1.38505 * 120.43464 * 179.97438 * 12 11 10 14 14 C 1.37673 * 120.31603 * 359.97438 * 13 12 11 15 15 C 1.40745 * 119.87573 * 359.74590 * 14 13 12 16 16 C 1.41402 * 120.21314 * 180.27470 * 15 14 13 17 17 H 1.07997 * 119.99926 * 208.16216 * 16 15 14 18 18 C 1.39937 * 119.99857 * 28.16814 * 16 15 14 19 19 N 1.30832 * 120.00148 * 13.21565 * 18 16 15 20 20 Si 1.86799 * 119.99939 * 193.21619 * 18 16 15 21 21 H 1.48504 * 109.47046 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47366 * 119.99941 * 20 18 16 23 23 H 1.48507 * 109.47279 * 240.00129 * 20 18 16 24 24 C 1.38191 * 119.94169 * 353.57950 * 11 10 8 25 25 C 1.33799 * 111.64370 * 359.66295 * 10 8 6 26 26 O 1.21536 * 123.77019 * 180.23065 * 25 10 8 27 27 N 1.34527 * 112.45703 * 0.22633 * 25 10 8 28 28 C 1.46498 * 126.69336 * 179.97438 * 27 25 10 29 29 H 1.09000 * 109.47034 * 299.99770 * 1 2 3 30 30 H 1.09004 * 109.47000 * 59.99858 * 1 2 3 31 31 H 1.08998 * 109.46788 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47034 * 240.00230 * 2 1 3 33 33 H 1.09000 * 109.47372 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47651 * 300.00273 * 3 2 1 35 35 H 1.09000 * 109.46914 * 60.00157 * 3 2 1 36 36 H 1.08998 * 109.46919 * 60.00050 * 5 4 2 37 37 H 1.09000 * 109.47104 * 300.00453 * 5 4 2 38 38 H 1.08004 * 119.78613 * 0.02562 * 12 11 10 39 39 H 1.08004 * 119.83766 * 180.02562 * 13 12 11 40 40 H 1.08000 * 120.06335 * 180.02562 * 14 13 12 41 41 H 0.97005 * 119.99667 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.15851 * 0.02562 * 24 11 10 43 43 H 1.09005 * 109.46460 * 0.02562 * 28 27 25 44 44 H 1.09000 * 109.47487 * 120.02082 * 28 27 25 45 45 H 1.08994 * 109.47006 * 240.02620 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0783 0.9885 6 6 2.7080 -2.6928 2.2944 7 1 2.9927 -3.7338 2.1417 8 6 3.8710 -1.8886 2.8406 9 8 4.9417 -1.6938 2.3061 10 7 3.4681 -1.4366 4.0444 11 6 4.2546 -0.6429 4.8915 12 6 3.7048 -0.1128 6.0558 13 6 4.4726 0.6721 6.9000 14 6 5.7893 0.9364 6.5969 15 6 6.3601 0.4025 5.4264 16 6 7.7133 0.6646 5.1112 17 1 8.0356 0.6741 4.0804 18 6 8.6350 0.9117 6.1348 19 7 8.3187 0.6502 7.3770 20 14 10.3170 1.6148 5.7274 21 1 10.4259 1.8195 4.2606 22 1 10.4918 2.9150 6.4234 23 1 11.3706 0.6685 6.1743 24 6 5.5739 -0.3878 4.5691 25 6 2.2222 -1.8332 4.3288 26 8 1.6400 -1.5467 5.3564 27 7 1.6861 -2.5845 3.3500 28 6 0.3475 -3.1794 3.3367 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 2.9320 -2.2467 0.1985 37 1 1.2538 -2.5434 0.7123 38 1 2.6731 -0.3157 6.3026 39 1 4.0365 1.0780 7.8008 40 1 6.3843 1.5486 7.2583 41 1 8.9578 0.8211 8.0865 42 1 6.0009 -0.7980 3.6659 43 1 -0.1737 -2.9218 4.2588 44 1 -0.2123 -2.7957 2.4837 45 1 0.4323 -4.2631 3.2579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591257557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:02 Heat of formation + Delta-G solvation = -72.864688 kcal Electronic energy + Delta-G solvation = -29430.826317 eV Core-core repulsion = 25413.950322 eV Total energy + Delta-G solvation = -4016.875995 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.72960 -39.88931 -39.74324 -39.07673 -37.36611 -36.55084 -35.14232 -33.77447 -31.84419 -31.49036 -30.43358 -28.17338 -27.75478 -27.34700 -25.60891 -23.59975 -23.47065 -22.30821 -21.73764 -21.48856 -19.66526 -18.42952 -18.08866 -17.95717 -17.44903 -17.09581 -16.96772 -16.58586 -16.38494 -15.99450 -15.77688 -15.42554 -15.20664 -15.04407 -14.73383 -14.67189 -14.20459 -13.83815 -13.69354 -13.66230 -13.44310 -13.22803 -13.15061 -13.07578 -12.91399 -12.88817 -12.74339 -12.59262 -12.35385 -12.17948 -11.72411 -11.64466 -11.61227 -11.25732 -11.02715 -10.71754 -10.57046 -10.05001 -9.48771 -8.97063 -8.64483 -6.43041 0.47878 0.81028 0.89176 1.05546 1.37462 1.47147 1.53631 1.93469 2.09497 2.21270 2.52922 2.72742 2.87023 3.58252 3.64820 3.79808 3.99816 4.09948 4.13290 4.28011 4.30372 4.34725 4.41318 4.44327 4.63901 4.70593 4.71504 4.76131 4.81456 4.90580 4.91173 4.93531 4.99132 5.02111 5.20714 5.24697 5.28661 5.33436 5.42284 5.53944 5.72846 6.01485 6.03500 6.14592 6.24586 6.30824 6.40769 6.59846 6.86730 6.91397 7.03390 8.33374 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003617 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.457766 B = 7739.099693 C = 8590.765445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.079 3.921 3 C -0.154 4.154 4 O -0.415 6.415 5 C 0.063 3.937 6 C 0.108 3.892 7 H 0.187 0.813 8 C 0.516 3.484 9 O -0.487 6.487 10 N -0.521 5.521 11 C 0.144 3.856 12 C -0.253 4.253 13 C -0.093 4.093 14 C -0.182 4.182 15 C 0.095 3.905 16 C -0.496 4.496 17 H 0.072 0.928 18 C 0.035 3.965 19 N -0.827 5.827 20 Si 0.988 3.012 21 H -0.261 1.261 22 H -0.260 1.260 23 H -0.263 1.263 24 C -0.253 4.253 25 C 0.694 3.306 26 O -0.567 6.567 27 N -0.606 5.606 28 C 0.113 3.887 29 H 0.044 0.956 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.135 0.865 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.290 0.710 42 H 0.117 0.883 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 -7.830 -15.962 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.022 3.978 3 C -0.211 4.211 4 O -0.336 6.336 5 C -0.014 4.014 6 C 0.002 3.998 7 H 0.204 0.796 8 C 0.306 3.694 9 O -0.358 6.358 10 N -0.256 5.256 11 C 0.054 3.946 12 C -0.274 4.274 13 C -0.112 4.112 14 C -0.202 4.202 15 C 0.092 3.908 16 C -0.526 4.526 17 H 0.090 0.910 18 C -0.179 4.179 19 N -0.453 5.453 20 Si 0.808 3.192 21 H -0.184 1.184 22 H -0.184 1.184 23 H -0.188 1.188 24 C -0.274 4.274 25 C 0.397 3.603 26 O -0.444 6.444 27 N -0.345 5.345 28 C -0.026 4.026 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.153 0.847 39 H 0.139 0.861 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.316 -7.556 -15.304 22.932 hybrid contribution 0.985 0.483 0.301 1.138 sum -14.330 -7.073 -15.003 21.919 Atomic orbital electron populations 1.22233 0.94308 1.03212 1.02565 1.22269 0.94736 0.93164 0.87614 1.21912 1.00895 0.95648 1.02672 1.88036 1.87280 1.20584 1.37670 1.22888 1.03132 0.82097 0.93328 1.22585 0.84473 1.03130 0.89606 0.79621 1.21565 0.88958 0.79139 0.79735 1.90701 1.24599 1.57643 1.62872 1.43881 1.15524 1.46660 1.19555 1.17635 0.90130 0.95164 0.91671 1.21094 1.01665 1.07731 0.96867 1.20882 0.93962 0.97930 0.98441 1.21402 0.94230 1.04232 1.00296 1.17794 0.93402 0.88346 0.91241 1.19770 0.93372 1.44758 0.94679 0.91021 1.26782 1.04794 0.92466 0.93881 1.69865 1.38259 1.35556 1.01661 0.85076 0.75641 0.78761 0.79685 1.18444 1.18400 1.18772 1.21331 0.93062 1.08062 1.04960 1.16049 0.80251 0.79504 0.84486 1.90781 1.64600 1.61489 1.27545 1.47669 1.17112 1.52907 1.16762 1.21883 0.77106 0.99196 1.04383 0.93724 0.89896 0.90847 0.89793 0.93886 0.88599 0.93931 0.89085 0.86974 0.84711 0.86055 0.87123 0.89943 0.86550 0.90607 0.88981 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.53 71.98 0.69 -1.54 16 2 C 0.08 1.43 3.34 30.59 0.10 1.53 16 3 C -0.15 -3.28 9.56 71.98 0.69 -2.59 16 4 O -0.42 -10.29 9.31 -148.98 -1.39 -11.68 16 5 C 0.06 1.01 5.58 71.98 0.40 1.41 16 6 C 0.11 2.32 3.89 44.37 0.17 2.49 16 7 H 0.19 2.23 8.14 -2.39 -0.02 2.21 16 8 C 0.52 19.00 6.91 87.94 0.61 19.61 16 9 O -0.49 -20.91 15.06 -2.91 -0.04 -20.95 16 10 N -0.52 -22.43 2.83 -594.92 -1.68 -24.12 16 11 C 0.14 7.56 6.55 38.03 0.25 7.81 16 12 C -0.25 -13.21 9.27 22.57 0.21 -13.00 16 13 C -0.09 -4.86 10.02 22.20 0.22 -4.64 16 14 C -0.18 -10.37 8.66 22.75 0.20 -10.17 16 15 C 0.10 5.66 5.55 -21.31 -0.12 5.54 16 16 C -0.50 -28.90 9.06 23.46 0.21 -28.68 16 17 H 0.07 4.11 7.88 -2.91 -0.02 4.09 16 18 C 0.04 1.87 5.21 85.25 0.44 2.31 16 19 N -0.83 -45.11 10.93 21.82 0.24 -44.87 16 20 Si 0.99 40.10 29.58 68.60 2.03 42.13 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 24 C -0.25 -14.38 9.06 22.84 0.21 -14.17 16 25 C 0.69 26.21 8.23 179.44 1.48 27.69 16 26 O -0.57 -24.75 14.08 -3.83 -0.05 -24.81 16 27 N -0.61 -14.60 3.11 -842.69 -2.62 -17.22 16 28 C 0.11 1.52 11.06 127.77 1.41 2.93 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.71 7.87 -2.39 -0.02 0.69 16 32 H 0.08 1.11 7.79 -2.39 -0.02 1.09 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 37 H 0.11 0.85 7.45 -2.39 -0.02 0.84 16 38 H 0.14 6.89 5.15 -2.91 -0.01 6.87 16 39 H 0.12 5.52 8.06 -2.91 -0.02 5.49 16 40 H 0.11 6.40 6.26 -2.91 -0.02 6.39 16 41 H 0.29 14.12 8.30 -92.70 -0.77 13.35 16 42 H 0.12 6.69 5.35 -2.91 -0.02 6.67 16 43 H 0.08 1.31 7.67 -2.38 -0.02 1.29 16 44 H 0.09 0.76 7.83 -2.39 -0.02 0.74 16 45 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -81.40 372.37 4.66 -76.74 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 1.01 Total: 28.25 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 7.17 Total: -3.47 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -4.07 Total: -86.21 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -1.49 Total: -57.43 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -81.40 4.66 -76.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591257557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.872 kcal (2) G-P(sol) polarization free energy of solvation -81.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds