Wall clock time and date at job start Tue Mar 31 2020 16:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46868 * 2 1 4 4 O 1.42897 * 109.47204 * 119.99797 * 2 1 3 5 5 C 1.42907 * 114.00002 * 150.00339 * 4 2 1 6 6 C 1.52998 * 109.47371 * 180.02562 * 5 4 2 7 7 H 1.08994 * 110.65913 * 176.45886 * 6 5 4 8 8 C 1.51590 * 110.59698 * 53.54244 * 6 5 4 9 9 O 1.21228 * 127.15649 * 61.51544 * 8 6 5 10 10 N 1.34771 * 105.68317 * 241.47458 * 8 6 5 11 11 C 1.40210 * 124.17329 * 179.97438 * 10 8 6 12 12 C 1.39245 * 119.94132 * 186.24859 * 11 10 8 13 13 C 1.38497 * 120.43408 * 179.70321 * 12 11 10 14 14 C 1.37680 * 120.32052 * 0.27252 * 13 12 11 15 15 C 1.40735 * 119.87205 * 0.02562 * 14 13 12 16 16 C 1.41401 * 120.21208 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00274 * 145.25731 * 16 15 14 18 18 C 1.39943 * 119.99873 * 325.25130 * 16 15 14 19 19 N 1.30823 * 119.99834 * 4.42875 * 18 16 15 20 20 Si 1.86799 * 119.99979 * 184.42571 * 18 16 15 21 21 H 1.48499 * 109.47038 * 60.00121 * 20 18 16 22 22 H 1.48497 * 109.47267 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47351 * 300.00505 * 20 18 16 24 24 C 1.38200 * 119.94513 * 6.50883 * 11 10 8 25 25 C 1.33783 * 111.64482 * 0.23325 * 10 8 6 26 26 O 1.21539 * 123.77227 * 179.77087 * 25 10 8 27 27 N 1.34531 * 112.46152 * 359.59460 * 25 10 8 28 28 C 1.46501 * 126.69236 * 180.12411 * 27 25 10 29 29 H 1.08997 * 109.47393 * 299.99489 * 1 2 3 30 30 H 1.08996 * 109.47503 * 60.00542 * 1 2 3 31 31 H 1.09011 * 109.46705 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47008 * 240.00132 * 2 1 3 33 33 H 1.08997 * 109.46697 * 60.00084 * 3 2 1 34 34 H 1.08994 * 109.47042 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47065 * 299.99741 * 3 2 1 36 36 H 1.08994 * 109.46898 * 59.99967 * 5 4 2 37 37 H 1.09003 * 109.46927 * 300.00343 * 5 4 2 38 38 H 1.07994 * 119.78116 * 359.97438 * 12 11 10 39 39 H 1.08008 * 119.83999 * 180.30244 * 13 12 11 40 40 H 1.07995 * 120.06469 * 180.02562 * 14 13 12 41 41 H 0.96998 * 120.00143 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.15999 * 0.02562 * 24 11 10 43 43 H 1.08994 * 109.47031 * 270.31036 * 28 27 25 44 44 H 1.09008 * 109.47065 * 30.31050 * 28 27 25 45 45 H 1.08998 * 109.47001 * 150.30454 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2661 -1.3244 0.9886 6 6 3.6756 -2.0090 2.2942 7 1 4.6042 -2.5642 2.1624 8 6 2.5718 -2.9247 2.7852 9 8 2.1169 -3.8937 2.2161 10 7 2.2021 -2.4381 3.9863 11 6 1.1977 -2.9988 4.7880 12 6 0.7961 -2.3511 5.9534 13 6 -0.1993 -2.8927 6.7496 14 6 -0.7992 -4.0816 6.3999 15 6 -0.3992 -4.7506 5.2281 16 6 -1.0101 -5.9722 4.8624 17 1 -1.1651 -6.2077 3.8199 18 6 -1.4137 -6.8763 5.8515 19 7 -1.3054 -6.5549 7.1150 20 14 -2.1070 -8.5420 5.3675 21 1 -1.0909 -9.2934 4.5877 22 1 -2.4575 -9.3068 6.5912 23 1 -3.3242 -8.3498 4.5389 24 6 0.6118 -4.1961 4.4230 25 6 2.9079 -1.3506 4.3167 26 8 2.7519 -0.7325 5.3515 27 7 3.8123 -1.0199 3.3773 28 6 4.7467 0.1076 3.4202 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.0200 -0.5872 0.7125 37 1 3.1810 -2.0706 0.1986 38 1 1.2608 -1.4181 6.2359 39 1 -0.5068 -2.3797 7.6490 40 1 -1.5753 -4.5000 7.0236 41 1 -1.5855 -7.1813 7.8005 42 1 0.9259 -4.7013 3.5218 43 1 4.2784 0.9847 2.9736 44 1 5.0085 0.3233 4.4561 45 1 5.6484 -0.1464 2.8629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591257558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:08 Heat of formation + Delta-G solvation = -50.342817 kcal Electronic energy + Delta-G solvation = -29423.309217 eV Core-core repulsion = 25407.409844 eV Total energy + Delta-G solvation = -4015.899373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.33300 -38.70864 -38.33954 -37.45395 -35.98069 -34.92958 -33.23005 -32.94737 -30.31310 -29.74531 -28.98717 -27.42200 -26.59043 -25.33487 -24.34199 -22.01266 -21.93025 -21.53585 -20.07246 -19.86375 -17.94297 -17.28163 -16.83723 -16.53567 -15.95078 -15.81486 -15.27252 -15.12324 -14.92338 -14.69890 -14.53287 -14.23210 -14.03004 -13.69904 -13.17129 -13.05113 -12.88416 -12.79075 -12.71080 -12.45079 -12.32241 -12.14862 -11.93235 -11.73578 -11.61328 -11.19564 -11.18585 -11.02409 -10.93976 -10.85879 -10.48062 -9.91687 -9.83163 -9.73823 -9.42152 -9.15119 -8.98164 -8.89637 -7.37627 -6.95972 -6.53701 -4.33787 1.89497 2.32418 2.68411 2.87972 3.11046 3.13749 3.16936 3.25996 3.35066 3.69570 4.02233 4.06244 4.45468 4.73299 4.74105 4.78027 4.81751 4.92628 4.97079 5.03079 5.11494 5.31503 5.37958 5.50507 5.53236 5.60117 5.67862 5.68540 5.78838 5.96559 6.04328 6.10399 6.31789 6.44554 6.78248 6.91314 6.98841 7.08107 7.10364 7.35467 7.47673 7.62315 7.75370 8.02905 8.10953 8.13259 8.28979 8.51511 8.72066 8.99213 9.01101 10.37215 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.003576 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.763903 B = 7828.329102 C = 8566.110520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.084 3.916 3 C -0.173 4.173 4 O -0.373 6.373 5 C 0.066 3.934 6 C 0.094 3.906 7 H 0.137 0.863 8 C 0.529 3.471 9 O -0.452 6.452 10 N -0.502 5.502 11 C 0.131 3.869 12 C -0.233 4.233 13 C -0.102 4.102 14 C -0.151 4.151 15 C 0.114 3.886 16 C -0.463 4.463 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.814 5.814 20 Si 0.916 3.084 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.221 4.221 25 C 0.706 3.294 26 O -0.530 6.530 27 N -0.625 5.625 28 C 0.125 3.875 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.278 0.722 42 H 0.125 0.875 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.805 12.270 -13.233 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 C -0.230 4.230 4 O -0.292 6.292 5 C -0.012 4.012 6 C -0.014 4.014 7 H 0.154 0.846 8 C 0.316 3.684 9 O -0.321 6.321 10 N -0.237 5.237 11 C 0.043 3.957 12 C -0.254 4.254 13 C -0.122 4.122 14 C -0.171 4.171 15 C 0.111 3.889 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.441 5.441 20 Si 0.741 3.259 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.242 4.242 25 C 0.409 3.591 26 O -0.404 6.404 27 N -0.365 5.365 28 C -0.016 4.016 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.114 0.886 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.381 12.065 -12.535 20.259 hybrid contribution 0.014 -0.737 -0.393 0.836 sum 10.394 11.327 -12.928 20.086 Atomic orbital electron populations 1.21866 0.93297 1.03277 1.02471 1.22093 0.95407 0.92180 0.87697 1.22290 1.01169 0.96882 1.02697 1.88061 1.35405 1.69994 1.35773 1.22616 0.87361 0.96434 0.94835 1.22264 0.99900 0.90041 0.89193 0.84573 1.20432 0.83000 0.84350 0.80649 1.90736 1.56635 1.24700 1.60078 1.43651 1.34136 1.26437 1.19515 1.17577 0.90648 0.95019 0.92494 1.20971 1.04348 1.03362 0.96705 1.20674 0.96810 0.96607 0.98059 1.21746 1.01831 0.93595 0.99906 1.17460 0.88906 0.91641 0.90871 1.19435 1.34809 1.00990 0.94154 0.90606 1.25842 0.93473 1.00497 0.94527 1.69744 1.37765 1.36094 1.00542 0.86251 0.79896 0.81178 0.78606 1.19121 1.20480 1.19065 1.21449 1.01459 0.96258 1.05062 1.15788 0.79202 0.80484 0.83625 1.90834 1.69241 1.55627 1.24701 1.47442 1.39145 1.30762 1.19175 1.21406 0.90451 0.86038 1.03696 0.91643 0.91284 0.91600 0.92130 0.91673 0.92687 0.91672 0.91497 0.90747 0.85218 0.88573 0.85114 0.91146 0.85695 0.92368 0.89998 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.56 37.16 0.36 -1.25 16 2 C 0.08 0.84 3.34 -26.73 -0.09 0.75 16 3 C -0.17 -1.40 9.53 37.16 0.35 -1.04 16 4 O -0.37 -4.90 9.39 -35.23 -0.33 -5.23 16 5 C 0.07 0.66 5.53 37.16 0.21 0.86 16 6 C 0.09 1.14 3.86 -68.20 -0.26 0.88 16 7 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 8 C 0.53 9.66 7.04 -10.55 -0.07 9.59 16 9 O -0.45 -9.35 15.06 5.60 0.08 -9.27 16 10 N -0.50 -10.53 2.83 -64.40 -0.18 -10.71 16 11 C 0.13 3.26 6.55 -83.66 -0.55 2.71 16 12 C -0.23 -5.83 9.27 -39.11 -0.36 -6.20 16 13 C -0.10 -2.57 10.02 -39.69 -0.40 -2.96 16 14 C -0.15 -4.10 8.67 -38.84 -0.34 -4.44 16 15 C 0.11 3.20 5.55 -106.85 -0.59 2.61 16 16 C -0.46 -12.88 9.04 -37.74 -0.34 -13.22 16 17 H 0.08 2.05 7.85 -52.49 -0.41 1.63 16 18 C 0.07 1.87 5.42 -17.34 -0.09 1.77 16 19 N -0.81 -21.81 10.60 55.55 0.59 -21.22 16 20 Si 0.92 19.64 29.56 -169.99 -5.03 14.62 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.22 -5.90 9.06 -38.69 -0.35 -6.25 16 25 C 0.71 13.37 8.23 -88.02 -0.72 12.65 16 26 O -0.53 -11.41 14.32 5.33 0.08 -11.34 16 27 N -0.62 -8.36 3.05 -180.28 -0.55 -8.91 16 28 C 0.13 1.10 10.97 59.85 0.66 1.76 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.06 0.51 7.79 -51.93 -0.40 0.10 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 37 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.13 3.20 5.15 -52.49 -0.27 2.93 16 39 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.13 3.63 6.14 -52.49 -0.32 3.31 16 41 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 42 H 0.13 3.33 5.36 -52.49 -0.28 3.05 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.77 8.04 -51.92 -0.42 0.35 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -33.86 373.36 -8.60 -42.46 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.28 Total: 5.75 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.60 Total: -1.78 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: -0.14 Total: -40.84 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.17 Total: -25.84 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.86 -8.60 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591257558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.883 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds