Wall clock time and date at job start Tue Mar 31 2020 16:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46868 * 2 1 4 4 O 1.42897 * 109.47204 * 119.99797 * 2 1 3 5 5 C 1.42907 * 114.00002 * 150.00339 * 4 2 1 6 6 C 1.52998 * 109.47371 * 180.02562 * 5 4 2 7 7 H 1.08994 * 110.65913 * 176.45886 * 6 5 4 8 8 C 1.51590 * 110.59698 * 53.54244 * 6 5 4 9 9 O 1.21228 * 127.15649 * 61.51544 * 8 6 5 10 10 N 1.34771 * 105.68317 * 241.47458 * 8 6 5 11 11 C 1.40210 * 124.17329 * 179.97438 * 10 8 6 12 12 C 1.39245 * 119.94132 * 186.24859 * 11 10 8 13 13 C 1.38497 * 120.43408 * 179.70321 * 12 11 10 14 14 C 1.37680 * 120.32052 * 0.27252 * 13 12 11 15 15 C 1.40735 * 119.87205 * 0.02562 * 14 13 12 16 16 C 1.41401 * 120.21208 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00274 * 145.25731 * 16 15 14 18 18 C 1.39943 * 119.99873 * 325.25130 * 16 15 14 19 19 N 1.30823 * 119.99834 * 4.42875 * 18 16 15 20 20 Si 1.86799 * 119.99979 * 184.42571 * 18 16 15 21 21 H 1.48499 * 109.47038 * 60.00121 * 20 18 16 22 22 H 1.48497 * 109.47267 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47351 * 300.00505 * 20 18 16 24 24 C 1.38200 * 119.94513 * 6.50883 * 11 10 8 25 25 C 1.33783 * 111.64482 * 0.23325 * 10 8 6 26 26 O 1.21539 * 123.77227 * 179.77087 * 25 10 8 27 27 N 1.34531 * 112.46152 * 359.59460 * 25 10 8 28 28 C 1.46501 * 126.69236 * 180.12411 * 27 25 10 29 29 H 1.08997 * 109.47393 * 299.99489 * 1 2 3 30 30 H 1.08996 * 109.47503 * 60.00542 * 1 2 3 31 31 H 1.09011 * 109.46705 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47008 * 240.00132 * 2 1 3 33 33 H 1.08997 * 109.46697 * 60.00084 * 3 2 1 34 34 H 1.08994 * 109.47042 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47065 * 299.99741 * 3 2 1 36 36 H 1.08994 * 109.46898 * 59.99967 * 5 4 2 37 37 H 1.09003 * 109.46927 * 300.00343 * 5 4 2 38 38 H 1.07994 * 119.78116 * 359.97438 * 12 11 10 39 39 H 1.08008 * 119.83999 * 180.30244 * 13 12 11 40 40 H 1.07995 * 120.06469 * 180.02562 * 14 13 12 41 41 H 0.96998 * 120.00143 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.15999 * 0.02562 * 24 11 10 43 43 H 1.08994 * 109.47031 * 270.31036 * 28 27 25 44 44 H 1.09008 * 109.47065 * 30.31050 * 28 27 25 45 45 H 1.08998 * 109.47001 * 150.30454 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2661 -1.3244 0.9886 6 6 3.6756 -2.0090 2.2942 7 1 4.6042 -2.5642 2.1624 8 6 2.5718 -2.9247 2.7852 9 8 2.1169 -3.8937 2.2161 10 7 2.2021 -2.4381 3.9863 11 6 1.1977 -2.9988 4.7880 12 6 0.7961 -2.3511 5.9534 13 6 -0.1993 -2.8927 6.7496 14 6 -0.7992 -4.0816 6.3999 15 6 -0.3992 -4.7506 5.2281 16 6 -1.0101 -5.9722 4.8624 17 1 -1.1651 -6.2077 3.8199 18 6 -1.4137 -6.8763 5.8515 19 7 -1.3054 -6.5549 7.1150 20 14 -2.1070 -8.5420 5.3675 21 1 -1.0909 -9.2934 4.5877 22 1 -2.4575 -9.3068 6.5912 23 1 -3.3242 -8.3498 4.5389 24 6 0.6118 -4.1961 4.4230 25 6 2.9079 -1.3506 4.3167 26 8 2.7519 -0.7325 5.3515 27 7 3.8123 -1.0199 3.3773 28 6 4.7467 0.1076 3.4202 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 4.0200 -0.5872 0.7125 37 1 3.1810 -2.0706 0.1986 38 1 1.2608 -1.4181 6.2359 39 1 -0.5068 -2.3797 7.6490 40 1 -1.5753 -4.5000 7.0236 41 1 -1.5855 -7.1813 7.8005 42 1 0.9259 -4.7013 3.5218 43 1 4.2784 0.9847 2.9736 44 1 5.0085 0.3233 4.4561 45 1 5.6484 -0.1464 2.8629 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591257558.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:07 Heat of formation + Delta-G solvation = -71.521303 kcal Electronic energy + Delta-G solvation = -29424.227585 eV Core-core repulsion = 25407.409844 eV Total energy + Delta-G solvation = -4016.817741 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.73146 -39.88893 -39.74792 -39.08171 -37.36545 -36.53369 -35.10750 -33.76878 -31.83431 -31.48815 -30.43194 -28.16857 -27.73852 -27.34206 -25.61388 -23.58020 -23.48401 -22.30402 -21.75343 -21.47369 -19.64467 -18.43637 -18.09373 -17.94955 -17.42389 -17.10334 -16.98870 -16.54186 -16.36923 -15.99412 -15.77215 -15.43986 -15.20234 -15.01115 -14.72676 -14.66723 -14.19328 -13.85550 -13.72553 -13.67894 -13.44322 -13.22184 -13.09701 -13.04289 -12.98756 -12.89301 -12.72022 -12.57742 -12.35614 -12.18869 -11.74638 -11.63294 -11.58904 -11.24437 -11.05324 -10.71318 -10.56579 -10.05444 -9.44721 -8.93815 -8.53234 -6.46289 0.46864 0.81090 0.88910 1.05278 1.37623 1.48600 1.51599 1.93574 2.09757 2.22804 2.54196 2.76986 2.84950 3.57409 3.62198 3.80012 4.00034 4.09894 4.13826 4.28332 4.29681 4.36145 4.42245 4.44544 4.62285 4.67646 4.71601 4.76202 4.81690 4.90630 4.91596 4.93732 5.01583 5.02199 5.22488 5.24531 5.31316 5.34060 5.42668 5.54717 5.71979 6.03263 6.05287 6.16255 6.24256 6.30447 6.40583 6.61923 6.89379 6.92442 7.03512 8.39398 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014720 B = 0.003576 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.763903 B = 7828.329102 C = 8566.110520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.079 3.921 3 C -0.165 4.165 4 O -0.414 6.414 5 C 0.063 3.937 6 C 0.109 3.891 7 H 0.188 0.812 8 C 0.515 3.485 9 O -0.487 6.487 10 N -0.520 5.520 11 C 0.137 3.863 12 C -0.243 4.243 13 C -0.099 4.099 14 C -0.174 4.174 15 C 0.089 3.911 16 C -0.499 4.499 17 H 0.071 0.929 18 C 0.030 3.970 19 N -0.839 5.839 20 Si 0.991 3.009 21 H -0.264 1.264 22 H -0.264 1.264 23 H -0.258 1.258 24 C -0.242 4.242 25 C 0.694 3.306 26 O -0.568 6.568 27 N -0.604 5.604 28 C 0.115 3.885 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.287 0.713 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.167 13.021 -15.404 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 C -0.223 4.223 4 O -0.335 6.335 5 C -0.014 4.014 6 C 0.002 3.998 7 H 0.205 0.795 8 C 0.304 3.696 9 O -0.358 6.358 10 N -0.256 5.256 11 C 0.047 3.953 12 C -0.264 4.264 13 C -0.117 4.117 14 C -0.194 4.194 15 C 0.086 3.914 16 C -0.530 4.530 17 H 0.089 0.911 18 C -0.182 4.182 19 N -0.466 5.466 20 Si 0.812 3.188 21 H -0.188 1.188 22 H -0.188 1.188 23 H -0.182 1.182 24 C -0.264 4.264 25 C 0.397 3.603 26 O -0.444 6.444 27 N -0.343 5.343 28 C -0.023 4.023 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.804 12.870 -14.753 23.393 hybrid contribution -0.661 -0.873 0.242 1.121 sum 12.143 11.998 -14.510 22.404 Atomic orbital electron populations 1.21915 0.94767 1.01742 1.02707 1.22269 0.94437 0.93500 0.87601 1.22226 1.02253 0.95209 1.02576 1.88029 1.37114 1.70729 1.37583 1.22892 0.87513 0.97741 0.93271 1.22615 0.99156 0.88710 0.89282 0.79501 1.21619 0.83897 0.84514 0.79554 1.90701 1.58178 1.26451 1.60507 1.43883 1.33865 1.27549 1.20302 1.17643 0.90861 0.94189 0.92603 1.21158 1.04515 1.03673 0.97012 1.20950 0.96175 0.95880 0.98745 1.21672 1.02746 0.94751 1.00224 1.17824 0.89591 0.92294 0.91683 1.19677 1.36728 1.01999 0.94552 0.91101 1.26774 0.93063 1.04228 0.94131 1.69812 1.37552 1.37678 1.01549 0.85118 0.79157 0.75752 0.78801 1.18811 1.18824 1.18238 1.21443 1.02276 0.97514 1.05131 1.16050 0.80001 0.79897 0.84372 1.90781 1.70591 1.56537 1.26525 1.47656 1.37601 1.31383 1.17642 1.21863 0.91203 0.84915 1.04328 0.93835 0.88624 0.93974 0.89925 0.93627 0.90817 0.89960 0.86806 0.89362 0.84633 0.86004 0.86220 0.90243 0.86400 0.91211 0.90875 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.56 71.98 0.69 -2.55 16 2 C 0.08 1.40 3.34 30.60 0.10 1.50 16 3 C -0.17 -2.15 9.53 71.98 0.69 -1.47 16 4 O -0.41 -10.08 9.39 -148.98 -1.40 -11.48 16 5 C 0.06 1.00 5.53 71.98 0.40 1.40 16 6 C 0.11 2.28 3.86 44.37 0.17 2.45 16 7 H 0.19 2.13 8.14 -2.39 -0.02 2.11 16 8 C 0.51 18.71 7.04 87.94 0.62 19.32 16 9 O -0.49 -20.66 15.06 -2.87 -0.04 -20.70 16 10 N -0.52 -22.24 2.83 -594.92 -1.68 -23.93 16 11 C 0.14 7.15 6.55 38.03 0.25 7.40 16 12 C -0.24 -12.62 9.27 22.57 0.21 -12.41 16 13 C -0.10 -5.13 10.02 22.20 0.22 -4.91 16 14 C -0.17 -9.94 8.67 22.75 0.20 -9.74 16 15 C 0.09 5.28 5.55 -21.31 -0.12 5.16 16 16 C -0.50 -29.12 9.04 23.46 0.21 -28.91 16 17 H 0.07 4.04 7.85 -2.91 -0.02 4.02 16 18 C 0.03 1.63 5.42 85.26 0.46 2.09 16 19 N -0.84 -46.07 10.60 21.83 0.23 -45.83 16 20 Si 0.99 40.67 29.56 68.60 2.03 42.70 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 C -0.24 -13.69 9.06 22.85 0.21 -13.49 16 25 C 0.69 26.07 8.23 179.44 1.48 27.55 16 26 O -0.57 -24.72 14.32 -3.84 -0.05 -24.77 16 27 N -0.60 -14.45 3.05 -842.69 -2.57 -17.02 16 28 C 0.12 1.55 10.97 127.77 1.40 2.95 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.07 0.68 7.87 -2.39 -0.02 0.67 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.11 0.81 7.84 -2.39 -0.02 0.79 16 37 H 0.09 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.14 6.89 5.15 -2.91 -0.02 6.88 16 39 H 0.12 5.53 8.06 -2.91 -0.02 5.51 16 40 H 0.12 7.00 6.14 -2.91 -0.02 6.98 16 41 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 42 H 0.12 6.71 5.36 -2.91 -0.02 6.69 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 1.17 8.04 -2.38 -0.02 1.16 16 45 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -81.35 373.36 4.70 -76.65 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 1.01 Total: 28.05 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 7.18 Total: -3.65 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -4.02 Total: -86.78 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -1.50 Total: -56.96 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -81.35 4.70 -76.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591257558.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.126 kcal (2) G-P(sol) polarization free energy of solvation -81.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds