Wall clock time and date at job start Tue Mar 31 2020 17:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.80665 * 2 1 4 4 O 1.43829 * 110.78451 * 236.66453 * 2 1 3 5 5 C 1.36132 * 109.26072 * 213.97704 * 4 2 1 6 6 C 1.39283 * 129.88617 * 198.36605 * 5 4 2 7 7 C 1.37922 * 120.24136 * 181.01326 * 6 5 4 8 8 C 1.38284 * 120.35197 * 0.02562 * 7 6 5 9 9 C 1.38346 * 119.76693 * 359.79279 * 8 7 6 10 10 C 1.37744 * 119.98049 * 0.04873 * 9 8 7 11 11 C 1.51648 * 132.17863 * 180.33430 * 10 9 8 12 12 H 1.08990 * 110.93702 * 282.78518 * 11 10 9 13 13 N 1.46495 * 110.93647 * 46.43811 * 11 10 9 14 14 C 1.34779 * 119.99889 * 270.58419 * 13 11 10 15 15 O 1.21585 * 120.00193 * 0.02562 * 14 13 11 16 16 N 1.34776 * 119.99808 * 179.97438 * 14 13 11 17 17 C 1.47422 * 125.65378 * 0.04823 * 16 14 13 18 18 C 1.54905 * 104.83549 * 204.09047 * 17 16 14 19 19 C 1.55158 * 101.57918 * 322.98619 * 18 17 16 20 20 O 1.42897 * 110.87316 * 277.06787 * 19 18 17 21 21 C 1.50700 * 110.71802 * 153.86664 * 19 18 17 22 22 H 1.08000 * 119.99973 * 8.03561 * 21 19 18 23 23 C 1.37880 * 120.00225 * 187.76742 * 21 19 18 24 24 N 1.31516 * 119.99359 * 354.18491 * 23 21 19 25 25 Si 1.86797 * 120.00277 * 174.18758 * 23 21 19 26 26 H 1.48492 * 109.47325 * 94.98633 * 25 23 21 27 27 H 1.48506 * 109.46691 * 214.98576 * 25 23 21 28 28 H 1.48498 * 109.47038 * 334.98311 * 25 23 21 29 29 C 1.47022 * 125.64501 * 180.02562 * 16 14 13 30 30 H 1.09003 * 109.46926 * 296.68088 * 1 2 3 31 31 H 1.08994 * 109.47229 * 56.68517 * 1 2 3 32 32 H 1.08995 * 109.46898 * 176.68723 * 1 2 3 33 33 H 1.08003 * 119.87638 * 1.00133 * 6 5 4 34 34 H 1.08003 * 119.82652 * 179.97438 * 7 6 5 35 35 H 1.08007 * 120.12021 * 179.83280 * 8 7 6 36 36 H 1.07998 * 120.01247 * 180.02562 * 9 8 7 37 37 H 0.97002 * 120.00496 * 90.58623 * 13 11 10 38 38 H 1.09005 * 110.36455 * 322.93140 * 17 16 14 39 39 H 1.09000 * 110.36961 * 85.24420 * 17 16 14 40 40 H 1.09003 * 111.00706 * 204.91598 * 18 17 16 41 41 H 1.08998 * 111.00578 * 81.05865 * 18 17 16 42 42 H 0.96701 * 113.99761 * 171.89158 * 20 19 18 43 43 H 0.97003 * 120.00036 * 180.02562 * 24 23 21 44 44 H 1.09000 * 109.88577 * 59.56642 * 29 16 14 45 45 H 1.08997 * 110.01583 * 298.46981 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0404 -0.7390 -1.1234 5 6 3.1961 -1.3619 -0.7636 6 6 4.2107 -1.8904 -1.5581 7 6 5.2996 -2.5053 -0.9762 8 6 5.3941 -2.6032 0.3999 9 6 4.3925 -2.0774 1.1963 10 6 3.3056 -1.4601 0.6175 11 6 2.0776 -0.7955 1.2090 12 1 1.3559 -1.5398 1.5453 13 7 2.4461 0.1051 2.3041 14 6 2.5173 -0.3625 3.5662 15 8 2.2763 -1.5319 3.7958 16 7 2.8568 0.4659 4.5736 17 6 3.1734 1.8994 4.4377 18 6 4.0610 2.2275 5.6641 19 6 3.4070 1.3516 6.7652 20 8 2.2743 2.0112 7.3344 21 6 4.4103 1.0014 7.8338 22 1 5.3875 1.4613 7.8286 23 6 4.0788 0.0981 8.8213 24 7 2.8526 -0.3710 8.8986 25 14 5.3712 -0.4593 10.0494 26 1 5.2819 0.3745 11.2749 27 1 5.1380 -1.8831 10.4013 28 1 6.7211 -0.3127 9.4482 29 6 2.9724 0.0899 5.9902 30 1 -0.3633 0.4615 0.9183 31 1 -0.3633 0.5644 -0.8587 32 1 -0.3633 -1.0259 -0.0594 33 1 4.1444 -1.8187 -2.6337 34 1 6.0823 -2.9132 -1.5987 35 1 6.2472 -3.0878 0.8515 36 1 4.4624 -2.1513 2.2715 37 1 2.6387 1.0380 2.1210 38 1 3.7215 2.0808 3.5132 39 1 2.2598 2.4935 4.4608 40 1 3.9999 3.2855 5.9189 41 1 5.0946 1.9284 5.4895 42 1 1.7587 1.4578 7.9369 43 1 2.6191 -1.0062 9.5935 44 1 3.7219 -0.6930 6.1060 45 1 2.0099 -0.2606 6.3628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592024644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:53 Heat of formation + Delta-G solvation = -73.313607 kcal Electronic energy + Delta-G solvation = -29129.308315 eV Core-core repulsion = 25112.412854 eV Total energy + Delta-G solvation = -4016.895461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50876 -39.57267 -37.64415 -37.44303 -34.77913 -34.29411 -32.25861 -31.83295 -31.10103 -30.15143 -29.65506 -27.83121 -26.38771 -24.85253 -22.81460 -22.65058 -21.95643 -21.44788 -19.76806 -19.54687 -17.95834 -17.35854 -17.03124 -16.94955 -16.45397 -15.67025 -15.34560 -15.03904 -14.77694 -14.47132 -14.27138 -13.95194 -13.71350 -13.60583 -13.29865 -13.05088 -12.88330 -12.86641 -12.66235 -12.29852 -12.20404 -11.95395 -11.76000 -11.61131 -11.43031 -11.07887 -11.04990 -10.92379 -10.86501 -10.71778 -10.46894 -10.20640 -9.73788 -9.35727 -9.06289 -8.95687 -8.69207 -8.33285 -8.28170 -7.85645 -6.30127 -4.37392 1.17465 1.30951 2.82708 3.08645 3.20692 3.28697 3.31578 3.57447 3.69279 4.15929 4.25045 4.33665 4.36732 4.66305 4.83489 4.92963 4.97055 4.98304 5.13496 5.28351 5.31935 5.40477 5.47077 5.54217 5.63902 5.64406 5.73884 5.83061 5.93821 5.96322 6.04469 6.21683 6.35917 6.41285 6.46275 6.49906 6.61068 6.66900 6.83289 6.89610 7.06400 7.17918 7.28173 7.53778 7.71679 8.03140 8.41574 8.65838 9.00933 9.26921 9.38102 10.78150 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.003203 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.254073 B = 8739.841135 C = 9662.980910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 H 0.091 0.909 4 O -0.299 6.299 5 C 0.104 3.896 6 C -0.144 4.144 7 C -0.085 4.085 8 C -0.150 4.150 9 C -0.046 4.046 10 C -0.182 4.182 11 C 0.183 3.817 12 H 0.115 0.885 13 N -0.739 5.739 14 C 0.718 3.282 15 O -0.591 6.591 16 N -0.628 5.628 17 C 0.102 3.898 18 C -0.116 4.116 19 C 0.248 3.752 20 O -0.585 6.585 21 C -0.538 4.538 22 H 0.066 0.934 23 C 0.072 3.928 24 N -0.892 5.892 25 Si 0.902 3.098 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.272 1.272 29 C 0.123 3.877 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.395 0.605 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.382 0.618 43 H 0.270 0.730 44 H 0.064 0.936 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 1.064 -18.787 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 H 0.108 0.892 4 O -0.213 6.213 5 C 0.059 3.941 6 C -0.162 4.162 7 C -0.103 4.103 8 C -0.169 4.169 9 C -0.065 4.065 10 C -0.184 4.184 11 C 0.077 3.923 12 H 0.133 0.867 13 N -0.396 5.396 14 C 0.420 3.580 15 O -0.470 6.470 16 N -0.365 5.365 17 C -0.021 4.021 18 C -0.154 4.154 19 C 0.208 3.792 20 O -0.394 6.394 21 C -0.577 4.577 22 H 0.084 0.916 23 C -0.132 4.132 24 N -0.530 5.530 25 Si 0.729 3.271 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.196 1.196 29 C 0.001 3.999 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.229 0.771 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.232 0.768 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.262 0.523 -19.100 19.109 hybrid contribution 0.579 -0.411 1.103 1.312 sum 0.317 0.112 -17.997 18.000 Atomic orbital electron populations 1.21880 0.91196 1.03926 1.03488 1.23601 0.96375 0.95375 0.82863 0.89168 1.86882 1.34788 1.62506 1.37074 1.19500 0.87046 0.94888 0.92713 1.20193 0.92703 1.03834 0.99494 1.20867 0.96816 0.97621 0.94992 1.21106 0.99758 1.02420 0.93583 1.20476 0.91499 0.93818 1.00669 1.21149 0.98543 1.05024 0.93677 1.20861 0.93665 0.91755 0.86044 0.86718 1.45003 1.76541 1.12692 1.05356 1.15463 0.78470 0.84531 0.79577 1.90904 1.57599 1.15539 1.82934 1.47961 1.70644 1.09435 1.08412 1.22262 0.98855 0.82191 0.98834 1.22721 0.98212 1.00806 0.93620 1.19518 0.84462 0.85851 0.89403 1.86111 1.43075 1.44888 1.65320 1.21476 1.00110 1.25464 1.10602 0.91566 1.25060 0.95633 0.95176 0.97293 1.69694 1.17720 1.31479 1.34134 0.86418 0.81669 0.78053 0.80973 1.20489 1.20912 1.19644 1.22863 1.01466 1.00268 0.75328 0.89853 0.91010 0.91056 0.85611 0.85273 0.85483 0.85457 0.77057 0.92639 0.91903 0.90574 0.90460 0.76790 0.92016 0.91740 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.59 37.16 0.36 -0.92 16 2 C 0.07 0.79 3.97 -25.81 -0.10 0.69 16 3 H 0.09 0.82 7.82 -51.93 -0.41 0.41 16 4 O -0.30 -3.69 10.81 -20.16 -0.22 -3.91 16 5 C 0.10 1.35 7.04 -38.95 -0.27 1.07 16 6 C -0.14 -1.60 10.06 -39.31 -0.40 -2.00 16 7 C -0.08 -0.88 10.01 -39.68 -0.40 -1.28 16 8 C -0.15 -1.79 10.07 -39.52 -0.40 -2.19 16 9 C -0.05 -0.67 10.03 -39.72 -0.40 -1.07 16 10 C -0.18 -2.57 5.93 -104.10 -0.62 -3.19 16 11 C 0.18 2.48 2.98 -67.70 -0.20 2.28 16 12 H 0.12 1.74 7.41 -51.93 -0.38 1.36 16 13 N -0.74 -10.64 5.14 -58.46 -0.30 -10.94 16 14 C 0.72 13.81 8.49 -86.92 -0.74 13.08 16 15 O -0.59 -13.62 16.36 5.29 0.09 -13.53 16 16 N -0.63 -12.44 3.33 -176.24 -0.59 -13.03 16 17 C 0.10 1.69 6.57 -2.53 -0.02 1.67 16 18 C -0.12 -2.22 6.23 -24.58 -0.15 -2.37 16 19 C 0.25 5.84 0.85 -89.93 -0.08 5.76 16 20 O -0.59 -14.34 13.10 -35.23 -0.46 -14.80 16 21 C -0.54 -13.87 8.13 -34.44 -0.28 -14.15 16 22 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 23 C 0.07 1.86 5.24 -17.82 -0.09 1.77 16 24 N -0.89 -23.53 11.04 55.43 0.61 -22.92 16 25 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 C 0.12 2.90 5.22 -3.06 -0.02 2.89 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 34 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 36 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.39 4.70 6.90 -40.82 -0.28 4.42 16 38 H 0.06 0.74 7.30 -51.93 -0.38 0.36 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 42 H 0.38 9.61 7.46 45.56 0.34 9.95 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.06 1.68 7.80 -51.93 -0.40 1.28 16 45 H 0.06 1.65 7.88 -51.93 -0.41 1.24 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -30.22 370.69 -9.80 -40.02 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -5.69 Total: 16.18 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -3.80 Total: 2.05 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.27 Total: -46.88 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.59 Total: -32.24 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.22 -9.80 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592024644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.297 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds