Wall clock time and date at job start Tue Mar 31 2020 17:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.80665 * 2 1 4 4 O 1.43829 * 110.78451 * 236.66453 * 2 1 3 5 5 C 1.36132 * 109.26072 * 213.97704 * 4 2 1 6 6 C 1.39283 * 129.88617 * 198.36605 * 5 4 2 7 7 C 1.37922 * 120.24136 * 181.01326 * 6 5 4 8 8 C 1.38284 * 120.35197 * 0.02562 * 7 6 5 9 9 C 1.38346 * 119.76693 * 359.79279 * 8 7 6 10 10 C 1.37744 * 119.98049 * 0.04873 * 9 8 7 11 11 C 1.51648 * 132.17863 * 180.33430 * 10 9 8 12 12 H 1.08990 * 110.93702 * 282.78518 * 11 10 9 13 13 N 1.46495 * 110.93647 * 46.43811 * 11 10 9 14 14 C 1.34779 * 119.99889 * 270.58419 * 13 11 10 15 15 O 1.21585 * 120.00193 * 0.02562 * 14 13 11 16 16 N 1.34776 * 119.99808 * 179.97438 * 14 13 11 17 17 C 1.47422 * 125.65378 * 0.04823 * 16 14 13 18 18 C 1.54905 * 104.83549 * 204.09047 * 17 16 14 19 19 C 1.55158 * 101.57918 * 322.98619 * 18 17 16 20 20 O 1.42897 * 110.87316 * 277.06787 * 19 18 17 21 21 C 1.50700 * 110.71802 * 153.86664 * 19 18 17 22 22 H 1.08000 * 119.99973 * 8.03561 * 21 19 18 23 23 C 1.37880 * 120.00225 * 187.76742 * 21 19 18 24 24 N 1.31516 * 119.99359 * 354.18491 * 23 21 19 25 25 Si 1.86797 * 120.00277 * 174.18758 * 23 21 19 26 26 H 1.48492 * 109.47325 * 94.98633 * 25 23 21 27 27 H 1.48506 * 109.46691 * 214.98576 * 25 23 21 28 28 H 1.48498 * 109.47038 * 334.98311 * 25 23 21 29 29 C 1.47022 * 125.64501 * 180.02562 * 16 14 13 30 30 H 1.09003 * 109.46926 * 296.68088 * 1 2 3 31 31 H 1.08994 * 109.47229 * 56.68517 * 1 2 3 32 32 H 1.08995 * 109.46898 * 176.68723 * 1 2 3 33 33 H 1.08003 * 119.87638 * 1.00133 * 6 5 4 34 34 H 1.08003 * 119.82652 * 179.97438 * 7 6 5 35 35 H 1.08007 * 120.12021 * 179.83280 * 8 7 6 36 36 H 1.07998 * 120.01247 * 180.02562 * 9 8 7 37 37 H 0.97002 * 120.00496 * 90.58623 * 13 11 10 38 38 H 1.09005 * 110.36455 * 322.93140 * 17 16 14 39 39 H 1.09000 * 110.36961 * 85.24420 * 17 16 14 40 40 H 1.09003 * 111.00706 * 204.91598 * 18 17 16 41 41 H 1.08998 * 111.00578 * 81.05865 * 18 17 16 42 42 H 0.96701 * 113.99761 * 171.89158 * 20 19 18 43 43 H 0.97003 * 120.00036 * 180.02562 * 24 23 21 44 44 H 1.09000 * 109.88577 * 59.56642 * 29 16 14 45 45 H 1.08997 * 110.01583 * 298.46981 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0404 -0.7390 -1.1234 5 6 3.1961 -1.3619 -0.7636 6 6 4.2107 -1.8904 -1.5581 7 6 5.2996 -2.5053 -0.9762 8 6 5.3941 -2.6032 0.3999 9 6 4.3925 -2.0774 1.1963 10 6 3.3056 -1.4601 0.6175 11 6 2.0776 -0.7955 1.2090 12 1 1.3559 -1.5398 1.5453 13 7 2.4461 0.1051 2.3041 14 6 2.5173 -0.3625 3.5662 15 8 2.2763 -1.5319 3.7958 16 7 2.8568 0.4659 4.5736 17 6 3.1734 1.8994 4.4377 18 6 4.0610 2.2275 5.6641 19 6 3.4070 1.3516 6.7652 20 8 2.2743 2.0112 7.3344 21 6 4.4103 1.0014 7.8338 22 1 5.3875 1.4613 7.8286 23 6 4.0788 0.0981 8.8213 24 7 2.8526 -0.3710 8.8986 25 14 5.3712 -0.4593 10.0494 26 1 5.2819 0.3745 11.2749 27 1 5.1380 -1.8831 10.4013 28 1 6.7211 -0.3127 9.4482 29 6 2.9724 0.0899 5.9902 30 1 -0.3633 0.4615 0.9183 31 1 -0.3633 0.5644 -0.8587 32 1 -0.3633 -1.0259 -0.0594 33 1 4.1444 -1.8187 -2.6337 34 1 6.0823 -2.9132 -1.5987 35 1 6.2472 -3.0878 0.8515 36 1 4.4624 -2.1513 2.2715 37 1 2.6387 1.0380 2.1210 38 1 3.7215 2.0808 3.5132 39 1 2.2598 2.4935 4.4608 40 1 3.9999 3.2855 5.9189 41 1 5.0946 1.9284 5.4895 42 1 1.7587 1.4578 7.9369 43 1 2.6191 -1.0062 9.5935 44 1 3.7219 -0.6930 6.1060 45 1 2.0099 -0.2606 6.3628 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592024644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:51 Heat of formation + Delta-G solvation = -94.452722 kcal Electronic energy + Delta-G solvation = -29130.224976 eV Core-core repulsion = 25112.412854 eV Total energy + Delta-G solvation = -4017.812122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.50460 -41.10623 -39.14681 -38.53121 -36.08829 -36.04531 -34.25292 -32.90587 -32.08137 -31.49017 -30.81237 -29.56132 -27.60040 -26.51794 -24.35685 -23.56435 -22.86809 -22.54840 -21.46629 -21.05651 -19.35348 -18.95164 -18.36805 -18.11484 -17.45511 -17.23965 -16.64986 -16.62299 -16.20715 -16.09195 -15.32972 -15.08589 -15.05033 -14.77528 -14.67809 -14.60100 -14.28763 -14.13380 -13.72180 -13.50870 -13.47576 -13.32770 -13.03452 -12.89884 -12.85713 -12.57005 -12.51164 -12.35570 -12.27240 -12.10073 -11.98691 -11.83016 -11.38904 -11.19119 -10.65739 -10.37926 -10.28531 -9.94408 -9.48394 -9.22843 -8.27844 -6.42007 0.22659 0.35020 1.38772 1.42536 1.51549 1.52614 2.05071 2.12003 2.36953 2.69857 2.98198 2.99814 3.24794 3.39849 3.78210 3.81586 3.86578 4.02826 4.10751 4.16124 4.17751 4.29011 4.35533 4.41538 4.48440 4.57151 4.58863 4.69443 4.77917 4.82163 5.01130 5.03009 5.10878 5.15537 5.19819 5.27349 5.31018 5.33253 5.43195 5.49034 5.53575 5.60763 5.73472 5.99373 6.11715 6.14884 6.64191 6.97058 7.26436 7.36152 7.48253 8.78656 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016552 B = 0.003203 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.254073 B = 8739.841135 C = 9662.980910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.115 0.885 4 O -0.302 6.302 5 C 0.095 3.905 6 C -0.141 4.141 7 C -0.074 4.074 8 C -0.154 4.154 9 C -0.073 4.073 10 C -0.205 4.205 11 C 0.178 3.822 12 H 0.089 0.911 13 N -0.714 5.714 14 C 0.716 3.284 15 O -0.637 6.637 16 N -0.632 5.632 17 C 0.107 3.893 18 C -0.110 4.110 19 C 0.234 3.766 20 O -0.586 6.586 21 C -0.558 4.558 22 H 0.066 0.934 23 C 0.027 3.973 24 N -0.913 5.913 25 Si 0.959 3.041 26 H -0.273 1.273 27 H -0.286 1.286 28 H -0.266 1.266 29 C 0.143 3.857 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.411 0.589 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.375 0.625 43 H 0.269 0.731 44 H 0.028 0.972 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.158 2.468 -21.648 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.026 3.974 3 H 0.132 0.868 4 O -0.216 6.216 5 C 0.050 3.950 6 C -0.159 4.159 7 C -0.091 4.091 8 C -0.172 4.172 9 C -0.091 4.091 10 C -0.207 4.207 11 C 0.072 3.928 12 H 0.107 0.893 13 N -0.372 5.372 14 C 0.418 3.582 15 O -0.519 6.519 16 N -0.369 5.369 17 C -0.015 4.015 18 C -0.148 4.148 19 C 0.194 3.806 20 O -0.394 6.394 21 C -0.596 4.596 22 H 0.085 0.915 23 C -0.174 4.174 24 N -0.552 5.552 25 Si 0.785 3.215 26 H -0.198 1.198 27 H -0.212 1.212 28 H -0.191 1.191 29 C 0.019 3.981 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.171 0.829 34 H 0.185 0.815 35 H 0.160 0.840 36 H 0.111 0.889 37 H 0.249 0.751 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.100 0.900 42 H 0.224 0.776 43 H 0.078 0.922 44 H 0.046 0.954 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.920 1.987 -22.015 22.124 hybrid contribution 0.229 -0.898 1.942 2.152 sum 1.149 1.089 -20.073 20.135 Atomic orbital electron populations 1.21908 0.89762 1.03919 1.04648 1.23731 0.97383 0.95614 0.80640 0.86781 1.86874 1.34648 1.62703 1.37402 1.19710 0.87674 0.95380 0.92233 1.20628 0.91968 1.02475 1.00820 1.21284 0.97274 0.96165 0.94399 1.21349 0.99417 1.01916 0.94490 1.20402 0.93338 0.96059 0.99351 1.21201 0.98654 1.06101 0.94726 1.20981 0.93472 0.91775 0.86559 0.89272 1.44711 1.75144 1.13580 1.03730 1.15609 0.78059 0.83787 0.80715 1.90869 1.59411 1.17707 1.83883 1.47867 1.71020 1.11010 1.07008 1.22430 0.99506 0.79920 0.99661 1.22711 0.98506 1.00788 0.92818 1.19710 0.83997 0.86865 0.90076 1.86099 1.43319 1.44812 1.65190 1.21827 1.00664 1.25709 1.11424 0.91549 1.25789 0.97269 0.95302 0.99027 1.69799 1.19068 1.31755 1.34608 0.85518 0.79639 0.77340 0.79046 1.19836 1.21183 1.19065 1.22313 0.98248 0.99538 0.77956 0.89433 0.88896 0.91861 0.82900 0.81481 0.83979 0.88875 0.75134 0.88266 0.90603 0.89041 0.90007 0.77632 0.92158 0.95355 0.95307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.59 71.98 0.69 -1.55 16 2 C 0.08 1.59 3.97 31.19 0.12 1.71 16 3 H 0.11 1.67 7.82 -2.39 -0.02 1.66 16 4 O -0.30 -6.82 10.81 -95.06 -1.03 -7.85 16 5 C 0.10 2.31 7.04 22.68 0.16 2.47 16 6 C -0.14 -2.70 10.06 22.45 0.23 -2.48 16 7 C -0.07 -1.29 10.01 22.21 0.22 -1.07 16 8 C -0.15 -3.48 10.07 22.31 0.22 -3.26 16 9 C -0.07 -2.17 10.03 22.18 0.22 -1.95 16 10 C -0.20 -5.78 5.93 -19.52 -0.12 -5.90 16 11 C 0.18 4.82 2.98 45.14 0.13 4.96 16 12 H 0.09 2.86 7.41 -2.39 -0.02 2.84 16 13 N -0.71 -20.22 5.14 -457.12 -2.35 -22.57 16 14 C 0.72 28.34 8.49 179.05 1.52 29.86 16 15 O -0.64 -31.18 16.36 -3.98 -0.07 -31.24 16 16 N -0.63 -25.40 3.33 -829.76 -2.76 -28.16 16 17 C 0.11 3.32 6.57 86.85 0.57 3.89 16 18 C -0.11 -4.08 6.23 31.99 0.20 -3.88 16 19 C 0.23 11.18 0.85 -10.35 -0.01 11.18 16 20 O -0.59 -29.21 13.10 -148.98 -1.95 -31.16 16 21 C -0.56 -29.25 8.13 25.60 0.21 -29.04 16 22 H 0.07 3.39 7.79 -2.91 -0.02 3.37 16 23 C 0.03 1.44 5.24 84.66 0.44 1.89 16 24 N -0.91 -50.00 11.04 21.45 0.24 -49.76 16 25 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 C 0.14 7.11 5.22 86.73 0.45 7.56 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.09 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.41 8.84 6.90 -92.71 -0.64 8.20 16 38 H 0.10 2.26 7.30 -2.38 -0.02 2.24 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.08 2.93 8.04 -2.39 -0.02 2.92 16 42 H 0.37 19.59 7.46 -74.06 -0.55 19.03 16 43 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.03 1.57 7.80 -2.39 -0.02 1.55 16 45 H 0.03 1.59 7.88 -2.39 -0.02 1.57 16 Total: -1.00 -69.75 370.69 -0.79 -70.53 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.17 Total: 41.52 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 5.27 Total: 14.39 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.87 Total: -100.49 kcal Atomic # 8 Polarization: -67.21 SS G_CDS: -3.04 Total: -70.26 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -69.75 -0.79 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592024644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.922 kcal (2) G-P(sol) polarization free energy of solvation -69.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds