Wall clock time and date at job start Tue Mar 31 2020 17:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00081 * 2 1 4 4 O 1.20824 * 119.99831 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99774 * 179.97438 * 3 2 1 6 6 H 1.09007 * 110.65659 * 56.80972 * 5 3 2 7 7 C 1.54595 * 110.99227 * 293.64969 * 5 3 2 8 8 N 1.48120 * 103.42372 * 204.37725 * 7 5 3 9 9 C 1.34774 * 127.02797 * 219.28320 * 8 7 5 10 10 O 1.21589 * 119.99641 * 179.68165 * 9 8 7 11 11 N 1.34771 * 120.00316 * 359.68691 * 9 8 7 12 12 C 1.39961 * 119.99844 * 175.06992 * 11 9 8 13 13 C 1.39288 * 119.94242 * 145.72206 * 12 11 9 14 14 C 1.38494 * 120.42697 * 179.97438 * 13 12 11 15 15 C 1.37678 * 120.31841 * 359.97438 * 14 13 12 16 16 C 1.40735 * 119.88874 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.21405 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00013 * 205.19513 * 17 16 15 19 19 C 1.39928 * 120.00200 * 25.18406 * 17 16 15 20 20 N 1.30831 * 119.99915 * 16.78989 * 19 17 16 21 21 Si 1.86796 * 120.00441 * 196.78373 * 19 17 16 22 22 H 1.48496 * 109.47155 * 90.00131 * 21 19 17 23 23 H 1.48496 * 109.47656 * 210.00261 * 21 19 17 24 24 H 1.48503 * 109.47213 * 330.00410 * 21 19 17 25 25 C 1.38229 * 119.94715 * 325.44481 * 12 11 9 26 26 C 1.47484 * 105.93336 * 39.02273 * 8 7 5 27 27 C 1.54006 * 107.08502 * 334.77605 * 26 8 7 28 28 H 1.09005 * 110.32405 * 120.29641 * 27 26 8 29 29 C 1.52995 * 110.33201 * 242.41497 * 27 26 8 30 30 H 1.09000 * 109.47060 * 300.00673 * 1 2 3 31 31 H 1.09002 * 109.47333 * 60.00088 * 1 2 3 32 32 H 1.08997 * 109.47590 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.61673 * 85.85641 * 7 5 3 34 34 H 1.09002 * 110.54081 * 322.85472 * 7 5 3 35 35 H 0.96997 * 120.00023 * 354.79594 * 11 9 8 36 36 H 1.07993 * 119.78840 * 359.95802 * 13 12 11 37 37 H 1.08004 * 119.83989 * 180.02562 * 14 13 12 38 38 H 1.08010 * 120.05581 * 180.02562 * 15 14 13 39 39 H 0.96997 * 120.00119 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.16249 * 0.02609 * 25 12 11 41 41 H 1.08993 * 109.91348 * 94.13905 * 26 8 7 42 42 H 1.08999 * 109.90896 * 215.42179 * 26 8 7 43 43 H 1.09005 * 109.46857 * 58.54429 * 29 27 26 44 44 H 1.08994 * 109.47494 * 178.54485 * 29 27 26 45 45 H 1.09005 * 109.46876 * 298.54990 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9798 0.7371 -0.8527 7 6 4.1491 0.7258 1.3231 8 7 5.4640 1.4000 1.4254 9 6 6.6207 0.8613 1.8592 10 8 7.6329 1.5345 1.8849 11 7 6.6556 -0.4236 2.2645 12 6 7.8749 -1.0133 2.6169 13 6 7.9198 -1.9611 3.6367 14 6 9.1208 -2.5514 3.9932 15 6 10.2844 -2.2077 3.3424 16 6 10.2544 -1.2517 2.3101 17 6 11.4455 -0.8932 1.6375 18 1 11.5275 0.0734 1.1628 19 6 12.5178 -1.7907 1.5871 20 7 12.3254 -3.0558 1.8592 21 14 14.2242 -1.1826 1.1311 22 1 14.9484 -0.7722 2.3609 23 1 14.9738 -2.2719 0.4554 24 1 14.1069 -0.0200 0.2146 25 6 9.0317 -0.6586 1.9486 26 6 5.2498 2.7794 0.9495 27 6 4.0375 2.7475 0.0003 28 1 3.2474 3.3994 0.3732 29 6 4.4546 3.1719 -1.4092 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 4.2745 -0.3555 1.2676 34 1 3.5111 0.9974 2.1641 35 1 5.8351 -0.9384 2.3157 36 1 7.0122 -2.2372 4.1528 37 1 9.1446 -3.2855 4.7851 38 1 11.2186 -2.6711 3.6237 39 1 13.0686 -3.6780 1.8239 40 1 8.9973 0.0732 1.1551 41 1 5.0425 3.4357 1.7946 42 1 6.1322 3.1282 0.4130 43 1 5.2358 2.5045 -1.7733 44 1 3.5928 3.1195 -2.0744 45 1 4.8326 4.1940 -1.3840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592265354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:26 Heat of formation + Delta-G solvation = -84.202790 kcal Electronic energy + Delta-G solvation = -28099.390801 eV Core-core repulsion = 24082.023149 eV Total energy + Delta-G solvation = -4017.367652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.22488 -40.06379 -38.36262 -37.06961 -36.59654 -34.43161 -33.28692 -32.58857 -30.85573 -29.77657 -28.30679 -27.91072 -26.24637 -25.24572 -24.51964 -22.15855 -21.28850 -20.84994 -20.01252 -19.43557 -18.31267 -18.05195 -17.40686 -17.00907 -16.79017 -15.83123 -15.55623 -15.11737 -14.69374 -14.60200 -14.41971 -14.06495 -13.95170 -13.58750 -13.41667 -13.16421 -13.04801 -12.89070 -12.69167 -12.35120 -12.28053 -12.06596 -11.61615 -11.36166 -11.31875 -11.21191 -11.17755 -11.10389 -11.01203 -10.91533 -10.82808 -10.42884 -10.17061 -9.68339 -9.47885 -9.09109 -8.99602 -8.69256 -7.40544 -6.86231 -6.66877 -4.29498 1.75862 2.22041 2.68570 2.81667 2.97512 3.12161 3.17163 3.25169 3.66042 3.89626 3.99687 4.09074 4.31589 4.42049 4.67645 4.69367 4.73080 4.79764 4.83478 4.92076 5.10768 5.15516 5.25766 5.41859 5.48240 5.60050 5.73043 5.76571 5.77984 5.94809 5.98531 6.16267 6.27863 6.43471 6.80579 6.86346 7.08196 7.13171 7.28713 7.32427 7.36357 7.70133 7.83427 8.02949 8.14972 8.27741 8.39897 8.70315 8.91883 9.00825 9.05452 10.25737 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.002545 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.642308 B =11001.284846 C =11810.487277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.475 3.525 4 O -0.501 6.501 5 C -0.097 4.097 6 H 0.124 0.876 7 C 0.116 3.884 8 N -0.642 5.642 9 C 0.722 3.278 10 O -0.557 6.557 11 N -0.678 5.678 12 C 0.168 3.832 13 C -0.262 4.262 14 C -0.091 4.091 15 C -0.173 4.173 16 C 0.120 3.880 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.075 3.925 20 N -0.796 5.796 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.209 4.209 26 C 0.129 3.871 27 C -0.094 4.094 28 H 0.104 0.896 29 C -0.144 4.144 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.393 0.607 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.216 4.950 -4.327 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.388 6.388 5 C -0.117 4.117 6 H 0.142 0.858 7 C -0.008 4.008 8 N -0.382 5.382 9 C 0.425 3.575 10 O -0.432 6.432 11 N -0.325 5.325 12 C 0.076 3.924 13 C -0.284 4.284 14 C -0.111 4.111 15 C -0.193 4.193 16 C 0.117 3.883 17 C -0.487 4.487 18 H 0.096 0.904 19 C -0.142 4.142 20 N -0.422 5.422 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.231 4.231 26 C 0.005 3.995 27 C -0.113 4.113 28 H 0.122 0.878 29 C -0.202 4.202 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.125 0.875 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.456 5.498 -4.290 20.668 hybrid contribution -0.083 -0.151 -0.217 0.277 sum -19.539 5.347 -4.507 20.753 Atomic orbital electron populations 1.23310 0.76037 1.03947 1.02615 1.86534 1.23642 1.33131 1.83835 1.23361 0.91434 0.81442 0.72086 1.90665 1.66860 1.36325 1.44953 1.22228 0.87359 1.00044 1.02042 0.85840 1.22188 0.85179 0.98535 0.94898 1.47849 1.07146 1.13341 1.69904 1.15368 0.81748 0.81956 0.78434 1.90999 1.31461 1.60772 1.59970 1.42599 1.09885 1.10476 1.69510 1.17226 0.83551 0.95875 0.95723 1.19999 0.97456 1.07506 1.03436 1.20441 0.92866 0.98828 0.98916 1.21341 0.97159 1.02759 0.98020 1.17488 0.91425 0.89651 0.89714 1.19585 0.96973 1.01730 1.30447 0.90373 1.25895 1.00945 0.94193 0.93130 1.69829 1.33211 1.02702 1.36440 0.86309 0.81418 0.79472 0.79497 1.19298 1.20404 1.18622 1.20994 0.91257 1.07370 1.03445 1.21970 0.97829 0.82822 0.96863 1.22179 0.98024 0.93709 0.97410 0.87753 1.21863 1.01548 1.02194 0.94546 0.91758 0.91828 0.87875 0.89082 0.90579 0.77272 0.89381 0.89054 0.86333 0.91001 0.87546 0.91413 0.89608 0.91911 0.92288 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.02 10.57 -39.26 -0.41 -3.43 16 3 C 0.47 4.47 7.27 36.00 0.26 4.73 16 4 O -0.50 -5.77 15.19 -18.75 -0.28 -6.06 16 5 C -0.10 -0.85 3.09 -90.08 -0.28 -1.13 16 6 H 0.12 1.01 7.86 -51.93 -0.41 0.60 16 7 C 0.12 1.12 6.33 -2.31 -0.01 1.11 16 8 N -0.64 -8.70 3.29 -175.70 -0.58 -9.28 16 9 C 0.72 13.49 8.27 -86.93 -0.72 12.78 16 10 O -0.56 -13.04 14.43 5.29 0.08 -12.96 16 11 N -0.68 -12.43 5.30 -14.27 -0.08 -12.51 16 12 C 0.17 3.86 6.25 -83.76 -0.52 3.34 16 13 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 14 C -0.09 -2.15 10.02 -39.69 -0.40 -2.55 16 15 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 16 C 0.12 3.34 5.57 -106.85 -0.59 2.75 16 17 C -0.46 -12.69 9.05 -37.74 -0.34 -13.03 16 18 H 0.08 2.15 7.90 -52.49 -0.41 1.73 16 19 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 20 N -0.80 -20.86 10.94 55.55 0.61 -20.26 16 21 Si 0.91 19.29 29.59 -169.99 -5.03 14.26 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.21 -5.49 8.39 -38.69 -0.32 -5.82 16 26 C 0.13 1.48 6.62 -2.98 -0.02 1.46 16 27 C -0.09 -0.85 2.99 -89.24 -0.27 -1.12 16 28 H 0.10 0.97 6.86 -51.93 -0.36 0.61 16 29 C -0.14 -1.18 8.89 37.16 0.33 -0.85 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.78 6.90 -51.93 -0.36 0.42 16 34 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 35 H 0.39 5.65 7.20 -40.82 -0.29 5.36 16 36 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.12 3.21 6.17 -52.48 -0.32 2.89 16 39 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 40 H 0.11 2.90 6.48 -52.49 -0.34 2.56 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.09 7.59 -51.93 -0.39 0.69 16 43 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -33.17 374.13 -8.95 -42.12 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.25 Total: 8.82 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -2.64 Total: -6.34 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.05 Total: -42.04 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.62 Total: -22.45 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.17 -8.95 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592265354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.086 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds