Wall clock time and date at job start Tue Mar 31 2020 17:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00081 * 2 1 4 4 O 1.20824 * 119.99831 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99774 * 179.97438 * 3 2 1 6 6 H 1.09007 * 110.65659 * 56.80972 * 5 3 2 7 7 C 1.54595 * 110.99227 * 293.64969 * 5 3 2 8 8 N 1.48120 * 103.42372 * 204.37725 * 7 5 3 9 9 C 1.34774 * 127.02797 * 219.28320 * 8 7 5 10 10 O 1.21589 * 119.99641 * 179.68165 * 9 8 7 11 11 N 1.34771 * 120.00316 * 359.68691 * 9 8 7 12 12 C 1.39961 * 119.99844 * 175.06992 * 11 9 8 13 13 C 1.39288 * 119.94242 * 145.72206 * 12 11 9 14 14 C 1.38494 * 120.42697 * 179.97438 * 13 12 11 15 15 C 1.37678 * 120.31841 * 359.97438 * 14 13 12 16 16 C 1.40735 * 119.88874 * 0.02562 * 15 14 13 17 17 C 1.41407 * 120.21405 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00013 * 205.19513 * 17 16 15 19 19 C 1.39928 * 120.00200 * 25.18406 * 17 16 15 20 20 N 1.30831 * 119.99915 * 16.78989 * 19 17 16 21 21 Si 1.86796 * 120.00441 * 196.78373 * 19 17 16 22 22 H 1.48496 * 109.47155 * 90.00131 * 21 19 17 23 23 H 1.48496 * 109.47656 * 210.00261 * 21 19 17 24 24 H 1.48503 * 109.47213 * 330.00410 * 21 19 17 25 25 C 1.38229 * 119.94715 * 325.44481 * 12 11 9 26 26 C 1.47484 * 105.93336 * 39.02273 * 8 7 5 27 27 C 1.54006 * 107.08502 * 334.77605 * 26 8 7 28 28 H 1.09005 * 110.32405 * 120.29641 * 27 26 8 29 29 C 1.52995 * 110.33201 * 242.41497 * 27 26 8 30 30 H 1.09000 * 109.47060 * 300.00673 * 1 2 3 31 31 H 1.09002 * 109.47333 * 60.00088 * 1 2 3 32 32 H 1.08997 * 109.47590 * 180.02562 * 1 2 3 33 33 H 1.09000 * 110.61673 * 85.85641 * 7 5 3 34 34 H 1.09002 * 110.54081 * 322.85472 * 7 5 3 35 35 H 0.96997 * 120.00023 * 354.79594 * 11 9 8 36 36 H 1.07993 * 119.78840 * 359.95802 * 13 12 11 37 37 H 1.08004 * 119.83989 * 180.02562 * 14 13 12 38 38 H 1.08010 * 120.05581 * 180.02562 * 15 14 13 39 39 H 0.96997 * 120.00119 * 179.97438 * 20 19 17 40 40 H 1.07995 * 120.16249 * 0.02609 * 25 12 11 41 41 H 1.08993 * 109.91348 * 94.13905 * 26 8 7 42 42 H 1.08999 * 109.90896 * 215.42179 * 26 8 7 43 43 H 1.09005 * 109.46857 * 58.54429 * 29 27 26 44 44 H 1.08994 * 109.47494 * 178.54485 * 29 27 26 45 45 H 1.09005 * 109.46876 * 298.54990 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9798 0.7371 -0.8527 7 6 4.1491 0.7258 1.3231 8 7 5.4640 1.4000 1.4254 9 6 6.6207 0.8613 1.8592 10 8 7.6329 1.5345 1.8849 11 7 6.6556 -0.4236 2.2645 12 6 7.8749 -1.0133 2.6169 13 6 7.9198 -1.9611 3.6367 14 6 9.1208 -2.5514 3.9932 15 6 10.2844 -2.2077 3.3424 16 6 10.2544 -1.2517 2.3101 17 6 11.4455 -0.8932 1.6375 18 1 11.5275 0.0734 1.1628 19 6 12.5178 -1.7907 1.5871 20 7 12.3254 -3.0558 1.8592 21 14 14.2242 -1.1826 1.1311 22 1 14.9484 -0.7722 2.3609 23 1 14.9738 -2.2719 0.4554 24 1 14.1069 -0.0200 0.2146 25 6 9.0317 -0.6586 1.9486 26 6 5.2498 2.7794 0.9495 27 6 4.0375 2.7475 0.0003 28 1 3.2474 3.3994 0.3732 29 6 4.4546 3.1719 -1.4092 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 4.2745 -0.3555 1.2676 34 1 3.5111 0.9974 2.1641 35 1 5.8351 -0.9384 2.3157 36 1 7.0122 -2.2372 4.1528 37 1 9.1446 -3.2855 4.7851 38 1 11.2186 -2.6711 3.6237 39 1 13.0686 -3.6780 1.8239 40 1 8.9973 0.0732 1.1551 41 1 5.0425 3.4357 1.7946 42 1 6.1322 3.1282 0.4130 43 1 5.2358 2.5045 -1.7733 44 1 3.5928 3.1195 -2.0744 45 1 4.8326 4.1940 -1.3840 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592265354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:25 Heat of formation + Delta-G solvation = -103.858418 kcal Electronic energy + Delta-G solvation = -28100.243133 eV Core-core repulsion = 24082.023149 eV Total energy + Delta-G solvation = -4018.219984 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.09388 -41.31674 -39.63529 -38.57451 -37.45560 -36.20372 -34.93282 -33.81092 -31.73996 -31.64302 -29.97336 -28.47847 -27.40597 -27.11396 -25.44468 -23.35243 -22.74660 -22.48796 -21.03631 -20.73786 -19.71652 -19.10262 -18.76740 -17.83342 -17.60371 -17.35354 -17.11361 -16.55015 -16.35861 -16.05937 -15.55126 -15.06904 -15.01271 -14.74753 -14.61085 -14.42644 -14.22030 -13.99963 -13.93447 -13.51090 -13.43082 -13.14189 -12.99421 -12.91727 -12.88634 -12.76471 -12.17194 -12.13456 -12.09145 -11.99921 -11.82921 -11.75325 -11.65474 -11.51410 -11.23580 -10.97625 -10.79683 -9.87513 -9.36833 -8.71293 -8.57036 -6.34696 0.91752 1.00680 1.06416 1.37224 1.38868 1.50454 1.51629 1.71631 2.12697 2.22479 2.75895 2.90319 3.17969 3.36845 3.67830 3.76571 3.96314 4.05404 4.14343 4.32409 4.35471 4.37101 4.49143 4.50468 4.62425 4.66106 4.68570 4.75511 4.76461 4.91943 4.94981 5.06195 5.12265 5.14592 5.15401 5.27315 5.30483 5.34956 5.37866 5.74844 5.83527 6.05078 6.12623 6.15533 6.38911 6.63145 6.71002 6.90036 6.96735 7.03857 7.52604 8.35267 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.002545 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.642308 B =11001.284846 C =11810.487277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.483 3.517 4 O -0.523 6.523 5 C -0.091 4.091 6 H 0.133 0.867 7 C 0.113 3.887 8 N -0.635 5.635 9 C 0.719 3.281 10 O -0.613 6.613 11 N -0.667 5.667 12 C 0.177 3.823 13 C -0.250 4.250 14 C -0.089 4.089 15 C -0.199 4.199 16 C 0.090 3.910 17 C -0.502 4.502 18 H 0.061 0.939 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.981 3.019 22 H -0.260 1.260 23 H -0.261 1.261 24 H -0.266 1.266 25 C -0.235 4.235 26 C 0.124 3.876 27 C -0.083 4.083 28 H 0.109 0.891 29 C -0.142 4.142 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.416 0.584 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.289 0.711 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 4.056 -3.977 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.326 3.674 4 O -0.412 6.412 5 C -0.111 4.111 6 H 0.151 0.849 7 C -0.009 4.009 8 N -0.373 5.373 9 C 0.421 3.579 10 O -0.492 6.492 11 N -0.315 5.315 12 C 0.083 3.917 13 C -0.271 4.271 14 C -0.108 4.108 15 C -0.219 4.219 16 C 0.087 3.913 17 C -0.532 4.532 18 H 0.079 0.921 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.801 3.199 22 H -0.185 1.185 23 H -0.185 1.185 24 H -0.190 1.190 25 C -0.257 4.257 26 C 0.001 3.999 27 C -0.102 4.102 28 H 0.127 0.873 29 C -0.199 4.199 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.254 0.746 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.736 4.581 -3.951 22.562 hybrid contribution 0.343 0.128 -0.306 0.478 sum -21.393 4.710 -4.257 22.315 Atomic orbital electron populations 1.23583 0.74505 1.05769 1.02715 1.86522 1.25144 1.32396 1.83388 1.23267 0.91308 0.81421 0.71445 1.90665 1.67307 1.37102 1.46135 1.22166 0.87379 0.99673 1.01912 0.84944 1.22467 0.83100 0.99286 0.96075 1.47739 1.07103 1.14383 1.68104 1.15512 0.82357 0.81710 0.78286 1.90970 1.34073 1.62047 1.62064 1.42326 1.09292 1.10632 1.69269 1.17273 0.84202 0.95312 0.94929 1.20432 0.98635 1.05804 1.02249 1.20823 0.92249 0.98827 0.98883 1.21308 0.98001 1.03618 0.98966 1.17822 0.92108 0.90765 0.90613 1.19720 0.98909 1.01924 1.32605 0.92089 1.26671 1.04343 0.94031 0.92611 1.69854 1.34748 1.03519 1.36616 0.85237 0.76223 0.79054 0.79354 1.18507 1.18528 1.18995 1.20932 0.92604 1.07902 1.04270 1.22153 0.98268 0.81877 0.97592 1.22084 0.96710 0.94238 0.97146 0.87331 1.21847 1.01638 1.02362 0.94086 0.91654 0.91799 0.85269 0.87460 0.88748 0.74622 0.84988 0.85764 0.87760 0.90016 0.89952 0.90618 0.91325 0.92678 0.91405 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.11 10.57 -51.41 -0.54 -5.65 16 3 C 0.48 7.92 7.27 71.24 0.52 8.43 16 4 O -0.52 -10.97 15.19 21.97 0.33 -10.64 16 5 C -0.09 -1.40 3.09 -10.44 -0.03 -1.43 16 6 H 0.13 1.85 7.86 -2.38 -0.02 1.83 16 7 C 0.11 1.88 6.33 86.61 0.55 2.43 16 8 N -0.64 -16.52 3.29 -828.04 -2.73 -19.25 16 9 C 0.72 26.81 8.27 179.06 1.48 28.29 16 10 O -0.61 -29.82 14.43 -4.00 -0.06 -29.87 16 11 N -0.67 -23.55 5.30 -317.33 -1.68 -25.23 16 12 C 0.18 8.03 6.25 38.09 0.24 8.27 16 13 C -0.25 -10.47 9.97 22.58 0.23 -10.25 16 14 C -0.09 -4.06 10.02 22.20 0.22 -3.84 16 15 C -0.20 -10.78 8.69 22.75 0.20 -10.58 16 16 C 0.09 5.23 5.57 -21.31 -0.12 5.11 16 17 C -0.50 -29.50 9.05 23.46 0.21 -29.29 16 18 H 0.06 3.62 7.90 -2.91 -0.02 3.60 16 19 C 0.04 2.03 5.16 85.25 0.44 2.47 16 20 N -0.82 -44.08 10.94 21.82 0.24 -43.84 16 21 Si 0.98 40.52 29.59 68.60 2.03 42.55 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 25 C -0.24 -12.90 8.39 22.85 0.19 -12.71 16 26 C 0.12 2.78 6.62 86.53 0.57 3.35 16 27 C -0.08 -1.38 2.99 -9.90 -0.03 -1.41 16 28 H 0.11 1.80 6.86 -2.38 -0.02 1.79 16 29 C -0.14 -2.18 8.89 71.98 0.64 -1.54 16 30 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 31 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 32 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 1.46 6.90 -2.39 -0.02 1.45 16 34 H 0.09 1.31 8.04 -2.39 -0.02 1.29 16 35 H 0.42 10.69 7.20 -92.71 -0.67 10.02 16 36 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.10 5.85 6.17 -2.91 -0.02 5.83 16 39 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 40 H 0.08 4.82 6.48 -2.91 -0.02 4.80 16 41 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.79 7.59 -2.39 -0.02 1.78 16 43 H 0.05 0.93 8.13 -2.38 -0.02 0.91 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 Total: -1.00 -76.19 374.13 4.45 -71.74 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.35 Total: 31.43 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.50 Total: -11.23 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -4.17 Total: -88.32 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.27 Total: -46.16 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -76.19 4.45 -71.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592265354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.120 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds