Wall clock time and date at job start Tue Mar 31 2020 16:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46756 * 2 1 4 4 O 1.21290 * 120.00264 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00124 * 180.02562 * 3 2 1 6 6 C 1.39952 * 119.99794 * 175.87424 * 5 3 2 7 7 C 1.38998 * 119.99451 * 215.17263 * 6 5 3 8 8 C 1.38204 * 120.22307 * 179.97438 * 7 6 5 9 9 C 1.38028 * 120.22259 * 0.02562 * 8 7 6 10 10 C 1.39579 * 119.99532 * 359.97438 * 9 8 7 11 11 C 1.47862 * 120.11001 * 180.02562 * 10 9 8 12 12 O 1.21550 * 119.99699 * 213.10643 * 11 10 9 13 13 N 1.34775 * 120.00238 * 33.10917 * 11 10 9 14 14 C 1.47433 * 125.64838 * 356.41830 * 13 11 10 15 15 C 1.54902 * 104.83274 * 155.90763 * 14 13 11 16 16 C 1.55153 * 101.58321 * 37.01166 * 15 14 13 17 17 O 1.42899 * 110.72449 * 83.03361 * 16 15 14 18 18 C 1.50704 * 110.72500 * 206.13557 * 16 15 14 19 19 H 1.08007 * 119.99023 * 357.55669 * 18 16 15 20 20 C 1.37865 * 120.00462 * 177.28034 * 18 16 15 21 21 N 1.31523 * 120.00008 * 0.27377 * 20 18 16 22 22 Si 1.86800 * 120.00232 * 180.27415 * 20 18 16 23 23 H 1.48497 * 109.47042 * 60.00076 * 22 20 18 24 24 H 1.48500 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47114 * 300.00043 * 22 20 18 26 26 C 1.47315 * 125.61721 * 176.64420 * 13 11 10 27 27 C 1.38596 * 120.00397 * 35.45157 * 6 5 3 28 28 H 1.08997 * 109.47329 * 299.99923 * 1 2 3 29 29 H 1.08998 * 109.47240 * 60.00467 * 1 2 3 30 30 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46995 * 240.00332 * 2 1 3 32 32 H 1.08992 * 109.47552 * 120.00162 * 2 1 3 33 33 H 0.96999 * 119.99644 * 355.87094 * 5 3 2 34 34 H 1.07997 * 119.88947 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.89545 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.00088 * 179.97438 * 9 8 7 37 37 H 1.08997 * 110.36273 * 37.06813 * 14 13 11 38 38 H 1.09001 * 110.36705 * 274.75090 * 14 13 11 39 39 H 1.08999 * 111.00603 * 278.93356 * 15 14 13 40 40 H 1.09000 * 111.03961 * 155.09801 * 15 14 13 41 41 H 0.96702 * 114.00275 * 182.43880 * 17 16 15 42 42 H 0.96999 * 119.99565 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.06484 * 61.67647 * 26 13 11 44 44 H 1.09003 * 109.85093 * 300.41654 * 26 13 11 45 45 H 1.08001 * 120.11084 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8243 2.9837 -0.0877 7 6 4.9925 3.2618 -0.7877 8 6 5.4575 4.5601 -0.8773 9 6 4.7654 5.5894 -0.2718 10 6 3.5912 5.3206 0.4335 11 6 2.8474 6.4213 1.0826 12 8 2.2476 6.2203 2.1206 13 7 2.8343 7.6476 0.5235 14 6 3.5751 8.0480 -0.6867 15 6 2.7884 9.2571 -1.2512 16 6 2.3489 9.9780 0.0505 17 8 3.3964 10.8161 0.5428 18 6 1.0929 10.7781 -0.1811 19 1 0.6534 10.8198 -1.1668 20 6 0.5019 11.4520 0.8664 21 7 1.0372 11.4011 2.0667 22 14 -1.0592 12.4374 0.5810 23 1 -2.1298 11.5360 0.0848 24 1 -1.4900 13.0629 1.8571 25 1 -0.7983 13.4974 -0.4259 26 6 2.0809 8.8105 1.0235 27 6 3.1250 4.0093 0.5287 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9874 0.9321 0.0596 34 1 5.5386 2.4605 -1.2632 35 1 6.3656 4.7702 -1.4229 36 1 5.1322 6.6026 -0.3437 37 1 3.5885 7.2329 -1.4102 38 1 4.5919 8.3440 -0.4285 39 1 1.9233 8.9265 -1.8260 40 1 3.4334 9.8970 -1.8534 41 1 3.1860 11.2607 1.3753 42 1 0.6215 11.8756 2.8036 43 1 2.4229 9.0757 2.0239 44 1 1.0155 8.5810 1.0426 45 1 2.2193 3.7947 1.0765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:38 Heat of formation + Delta-G solvation = -87.400442 kcal Electronic energy + Delta-G solvation = -28506.288627 eV Core-core repulsion = 24488.782315 eV Total energy + Delta-G solvation = -4017.506312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.80233 -39.66051 -38.20670 -37.04417 -35.00996 -34.25596 -33.17120 -32.17828 -31.22104 -30.11848 -29.63607 -27.75884 -25.47554 -25.06451 -23.72070 -22.66336 -21.90812 -20.46768 -19.76178 -19.32206 -17.62631 -17.43106 -17.12822 -16.36764 -16.01642 -15.82737 -15.48119 -15.14721 -14.79043 -14.49063 -14.37449 -14.07214 -13.76902 -13.50648 -13.16133 -12.94037 -12.85204 -12.71115 -12.57012 -12.19112 -12.08671 -12.05371 -11.59908 -11.51465 -11.47462 -11.36779 -11.00398 -10.75820 -10.63231 -10.53172 -10.48708 -10.14529 -9.97445 -9.40259 -9.30506 -8.92641 -8.64746 -8.32932 -8.26193 -7.86786 -6.26510 -4.35073 0.94484 1.28475 2.34659 2.75414 3.16990 3.24987 3.30425 3.32499 3.61457 3.94040 4.29252 4.33631 4.67853 4.72375 4.75186 4.83147 4.99668 5.05147 5.12988 5.17875 5.40634 5.42811 5.44619 5.47125 5.61749 5.74049 5.78051 5.88061 5.95565 6.00561 6.10158 6.15773 6.25594 6.34196 6.45738 6.52025 6.77402 6.87096 6.88708 7.00282 7.10298 7.28597 7.39840 7.75407 7.88379 8.02362 8.21594 8.66575 8.74502 9.32185 9.41607 10.81349 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.002958 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.943674 B = 9464.014787 C =10611.281244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.505 3.495 4 O -0.510 6.510 5 N -0.676 5.676 6 C 0.130 3.870 7 C -0.130 4.130 8 C -0.109 4.109 9 C -0.108 4.108 10 C -0.098 4.098 11 C 0.561 3.439 12 O -0.544 6.544 13 N -0.603 5.603 14 C 0.097 3.903 15 C -0.119 4.119 16 C 0.249 3.751 17 O -0.585 6.585 18 C -0.538 4.538 19 H 0.066 0.934 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.103 3.897 27 C -0.068 4.068 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.410 0.590 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.384 0.616 42 H 0.271 0.729 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -21.557 -6.563 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.292 3.708 4 O -0.384 6.384 5 N -0.322 5.322 6 C 0.037 3.963 7 C -0.150 4.150 8 C -0.127 4.127 9 C -0.127 4.127 10 C -0.102 4.102 11 C 0.349 3.651 12 O -0.423 6.423 13 N -0.336 5.336 14 C -0.026 4.026 15 C -0.157 4.157 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.018 4.018 27 C -0.089 4.089 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.246 0.754 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.235 0.765 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.881 -21.240 -6.324 23.521 hybrid contribution -0.716 0.295 0.480 0.911 sum 7.165 -20.945 -5.845 22.895 Atomic orbital electron populations 1.21562 0.92598 1.01806 1.03828 1.21628 0.99067 0.92800 1.04502 1.21085 0.81601 0.92493 0.75584 1.90797 1.54929 1.46182 1.46493 1.43524 1.07952 1.06810 1.73887 1.17580 0.95644 0.84370 0.98755 1.20984 0.96787 0.97614 0.99628 1.20874 1.00051 0.91754 1.00068 1.21748 0.94377 1.00515 0.96086 1.19961 0.96530 0.93790 0.99897 1.17885 0.81223 0.81534 0.84471 1.90757 1.45664 1.82610 1.23308 1.48758 1.46952 1.10054 1.27797 1.22583 0.95817 0.97535 0.86658 1.22783 0.99511 0.94991 0.98410 1.19487 0.86216 0.86134 0.87362 1.86082 1.43604 1.64570 1.45231 1.21476 1.09170 1.30872 0.96111 0.91551 1.25075 0.97679 0.95713 0.94821 1.69639 1.40705 1.42668 1.00399 0.86446 0.82700 0.80090 0.77597 1.20002 1.21072 1.19989 1.23121 0.95353 0.83839 0.99483 1.21289 1.00490 0.90343 0.96775 0.91657 0.91766 0.91862 0.88650 0.88622 0.75430 0.85584 0.85059 0.84357 0.91375 0.91430 0.90435 0.90393 0.76472 0.91895 0.91436 0.91407 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.14 -0.89 6.42 -27.88 -0.18 -1.06 16 3 C 0.50 5.50 7.67 -10.98 -0.08 5.42 16 4 O -0.51 -8.25 13.45 5.55 0.07 -8.17 16 5 N -0.68 -6.22 5.34 -9.89 -0.05 -6.27 16 6 C 0.13 1.62 6.29 -83.74 -0.53 1.09 16 7 C -0.13 -1.30 9.96 -39.31 -0.39 -1.69 16 8 C -0.11 -1.16 10.02 -39.67 -0.40 -1.55 16 9 C -0.11 -1.49 7.90 -39.16 -0.31 -1.80 16 10 C -0.10 -1.71 5.58 -104.99 -0.59 -2.30 16 11 C 0.56 12.25 7.58 -12.32 -0.09 12.16 16 12 O -0.54 -13.88 17.10 5.32 0.09 -13.79 16 13 N -0.60 -13.08 3.33 -171.38 -0.57 -13.65 16 14 C 0.10 1.74 5.07 -2.53 -0.01 1.73 16 15 C -0.12 -2.40 6.23 -24.59 -0.15 -2.55 16 16 C 0.25 6.09 0.85 -89.93 -0.08 6.01 16 17 O -0.59 -14.78 13.08 -35.23 -0.46 -15.24 16 18 C -0.54 -14.26 8.11 -34.44 -0.28 -14.54 16 19 H 0.07 1.72 7.77 -52.48 -0.41 1.32 16 20 C 0.07 1.86 5.27 -17.82 -0.09 1.77 16 21 N -0.90 -24.19 10.96 55.43 0.61 -23.58 16 22 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.10 2.58 5.39 -2.90 -0.02 2.57 16 27 C -0.07 -1.13 8.24 -38.98 -0.32 -1.45 16 28 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 29 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.41 2.01 8.82 -40.82 -0.36 1.65 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.14 1.82 5.15 -52.49 -0.27 1.55 16 37 H 0.07 1.05 6.49 -51.93 -0.34 0.72 16 38 H 0.07 1.13 7.21 -51.93 -0.37 0.76 16 39 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.38 9.99 7.24 45.56 0.33 10.32 16 42 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.07 1.83 8.00 -51.93 -0.42 1.41 16 44 H 0.07 1.85 7.81 -51.93 -0.41 1.45 16 45 H 0.15 2.81 6.17 -52.49 -0.32 2.49 16 LS Contribution 369.81 15.07 5.57 5.57 Total: -1.00 -34.07 369.81 -8.43 -42.50 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.49 Total: 13.80 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -3.18 Total: 3.05 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.02 Total: -43.50 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.30 Total: -37.20 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.07 -8.43 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.899 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds