Wall clock time and date at job start Tue Mar 31 2020 16:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46756 * 2 1 4 4 O 1.21290 * 120.00264 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00124 * 180.02562 * 3 2 1 6 6 C 1.39952 * 119.99794 * 175.87424 * 5 3 2 7 7 C 1.38998 * 119.99451 * 215.17263 * 6 5 3 8 8 C 1.38204 * 120.22307 * 179.97438 * 7 6 5 9 9 C 1.38028 * 120.22259 * 0.02562 * 8 7 6 10 10 C 1.39579 * 119.99532 * 359.97438 * 9 8 7 11 11 C 1.47862 * 120.11001 * 180.02562 * 10 9 8 12 12 O 1.21550 * 119.99699 * 213.10643 * 11 10 9 13 13 N 1.34775 * 120.00238 * 33.10917 * 11 10 9 14 14 C 1.47433 * 125.64838 * 356.41830 * 13 11 10 15 15 C 1.54902 * 104.83274 * 155.90763 * 14 13 11 16 16 C 1.55153 * 101.58321 * 37.01166 * 15 14 13 17 17 O 1.42899 * 110.72449 * 83.03361 * 16 15 14 18 18 C 1.50704 * 110.72500 * 206.13557 * 16 15 14 19 19 H 1.08007 * 119.99023 * 357.55669 * 18 16 15 20 20 C 1.37865 * 120.00462 * 177.28034 * 18 16 15 21 21 N 1.31523 * 120.00008 * 0.27377 * 20 18 16 22 22 Si 1.86800 * 120.00232 * 180.27415 * 20 18 16 23 23 H 1.48497 * 109.47042 * 60.00076 * 22 20 18 24 24 H 1.48500 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47114 * 300.00043 * 22 20 18 26 26 C 1.47315 * 125.61721 * 176.64420 * 13 11 10 27 27 C 1.38596 * 120.00397 * 35.45157 * 6 5 3 28 28 H 1.08997 * 109.47329 * 299.99923 * 1 2 3 29 29 H 1.08998 * 109.47240 * 60.00467 * 1 2 3 30 30 H 1.09004 * 109.46794 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46995 * 240.00332 * 2 1 3 32 32 H 1.08992 * 109.47552 * 120.00162 * 2 1 3 33 33 H 0.96999 * 119.99644 * 355.87094 * 5 3 2 34 34 H 1.07997 * 119.88947 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.89545 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.00088 * 179.97438 * 9 8 7 37 37 H 1.08997 * 110.36273 * 37.06813 * 14 13 11 38 38 H 1.09001 * 110.36705 * 274.75090 * 14 13 11 39 39 H 1.08999 * 111.00603 * 278.93356 * 15 14 13 40 40 H 1.09000 * 111.03961 * 155.09801 * 15 14 13 41 41 H 0.96702 * 114.00275 * 182.43880 * 17 16 15 42 42 H 0.96999 * 119.99565 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.06484 * 61.67647 * 26 13 11 44 44 H 1.09003 * 109.85093 * 300.41654 * 26 13 11 45 45 H 1.08001 * 120.11084 * 359.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6672 -0.0005 6 6 3.8243 2.9837 -0.0877 7 6 4.9925 3.2618 -0.7877 8 6 5.4575 4.5601 -0.8773 9 6 4.7654 5.5894 -0.2718 10 6 3.5912 5.3206 0.4335 11 6 2.8474 6.4213 1.0826 12 8 2.2476 6.2203 2.1206 13 7 2.8343 7.6476 0.5235 14 6 3.5751 8.0480 -0.6867 15 6 2.7884 9.2571 -1.2512 16 6 2.3489 9.9780 0.0505 17 8 3.3964 10.8161 0.5428 18 6 1.0929 10.7781 -0.1811 19 1 0.6534 10.8198 -1.1668 20 6 0.5019 11.4520 0.8664 21 7 1.0372 11.4011 2.0667 22 14 -1.0592 12.4374 0.5810 23 1 -2.1298 11.5360 0.0848 24 1 -1.4900 13.0629 1.8571 25 1 -0.7983 13.4974 -0.4259 26 6 2.0809 8.8105 1.0235 27 6 3.1250 4.0093 0.5287 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9874 0.9321 0.0596 34 1 5.5386 2.4605 -1.2632 35 1 6.3656 4.7702 -1.4229 36 1 5.1322 6.6026 -0.3437 37 1 3.5885 7.2329 -1.4102 38 1 4.5919 8.3440 -0.4285 39 1 1.9233 8.9265 -1.8260 40 1 3.4334 9.8970 -1.8534 41 1 3.1860 11.2607 1.3753 42 1 0.6215 11.8756 2.8036 43 1 2.4229 9.0757 2.0239 44 1 1.0155 8.5810 1.0426 45 1 2.2193 3.7947 1.0765 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:38 Heat of formation + Delta-G solvation = -113.917671 kcal Electronic energy + Delta-G solvation = -28507.438500 eV Core-core repulsion = 24488.782315 eV Total energy + Delta-G solvation = -4018.656185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84450 -41.10080 -39.48715 -38.76257 -36.31478 -35.78952 -34.23978 -33.83115 -32.47092 -31.60967 -30.81419 -29.51791 -27.31622 -25.85323 -25.26320 -23.79899 -23.09403 -21.55981 -21.26336 -20.85786 -19.19899 -18.83567 -18.30009 -17.46141 -17.41803 -17.07438 -16.88827 -16.63872 -16.47483 -15.95818 -15.59678 -15.25984 -14.88994 -14.83768 -14.69004 -14.60605 -14.34278 -13.89800 -13.75165 -13.56634 -13.37125 -13.21838 -12.97821 -12.80494 -12.78844 -12.65547 -12.38669 -12.35831 -12.27542 -12.14606 -12.05918 -11.57265 -11.20821 -11.06276 -10.90486 -10.67058 -10.33625 -10.03679 -9.65314 -9.24086 -8.30332 -6.46522 -0.14404 0.26417 1.39272 1.40678 1.48581 1.49683 1.69731 1.91673 2.11101 2.35302 2.78001 2.95945 3.41050 3.68220 3.73008 3.91623 4.00556 4.09184 4.14349 4.19120 4.22713 4.24494 4.32595 4.41988 4.52033 4.54410 4.62362 4.71975 4.87480 4.94105 4.95274 5.02293 5.06215 5.16257 5.20800 5.27277 5.29733 5.32804 5.39056 5.40982 5.48479 5.70493 5.93458 6.00295 6.40400 6.51052 6.61507 7.01864 7.15172 7.24150 7.31956 8.75781 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015596 B = 0.002958 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.943674 B = 9464.014787 C =10611.281244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.495 3.505 4 O -0.574 6.574 5 N -0.659 5.659 6 C 0.128 3.872 7 C -0.102 4.102 8 C -0.092 4.092 9 C -0.109 4.109 10 C -0.127 4.127 11 C 0.551 3.449 12 O -0.602 6.602 13 N -0.608 5.608 14 C 0.103 3.897 15 C -0.114 4.114 16 C 0.236 3.764 17 O -0.584 6.584 18 C -0.560 4.560 19 H 0.068 0.932 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.965 3.035 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.264 1.264 26 C 0.119 3.881 27 C -0.097 4.097 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.435 0.565 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.146 0.854 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.377 0.623 42 H 0.271 0.729 43 H 0.033 0.967 44 H 0.028 0.972 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 -24.294 -9.742 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.286 3.714 4 O -0.452 6.452 5 N -0.306 5.306 6 C 0.034 3.966 7 C -0.122 4.122 8 C -0.110 4.110 9 C -0.128 4.128 10 C -0.131 4.131 11 C 0.342 3.658 12 O -0.485 6.485 13 N -0.339 5.339 14 C -0.018 4.018 15 C -0.151 4.151 16 C 0.196 3.804 17 O -0.393 6.393 18 C -0.598 4.598 19 H 0.086 0.914 20 C -0.177 4.177 21 N -0.557 5.557 22 Si 0.790 3.210 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.188 1.188 26 C -0.004 4.004 27 C -0.118 4.118 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.144 0.856 33 H 0.275 0.725 34 H 0.197 0.803 35 H 0.197 0.803 36 H 0.163 0.837 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.227 0.773 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.084 -24.021 -9.546 28.124 hybrid contribution -1.661 1.039 1.475 2.452 sum 9.423 -22.982 -8.071 26.117 Atomic orbital electron populations 1.21587 0.94179 1.02856 1.01501 1.21708 0.97572 0.89844 1.07617 1.22065 0.81609 0.93801 0.73969 1.90796 1.56610 1.48468 1.49375 1.43451 1.08065 1.06393 1.72740 1.17727 0.96018 0.84691 0.98164 1.21554 0.94809 0.98979 0.96904 1.21408 1.00510 0.90800 0.98258 1.21868 0.93055 1.02168 0.95754 1.19617 0.98469 0.92144 1.02835 1.18837 0.80636 0.82377 0.83911 1.90697 1.48274 1.83542 1.25960 1.48821 1.46921 1.09299 1.28873 1.22798 0.95709 0.97722 0.85604 1.22790 1.00356 0.95542 0.96451 1.19662 0.86018 0.85590 0.89136 1.86065 1.43815 1.64608 1.44791 1.21833 1.10291 1.31349 0.96300 0.91369 1.25856 1.00501 0.96734 0.94623 1.69753 1.41794 1.43156 1.00950 0.85497 0.79066 0.78794 0.77643 1.20087 1.20851 1.18839 1.22664 0.93399 0.85950 0.98426 1.21073 1.00362 0.91680 0.98698 0.94422 0.93822 0.88940 0.84924 0.85601 0.72468 0.80346 0.80323 0.83674 0.87920 0.89403 0.90215 0.88250 0.77322 0.91996 0.94864 0.95319 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.20 71.98 0.66 -1.49 16 2 C -0.13 -1.29 6.42 29.85 0.19 -1.10 16 3 C 0.50 10.45 7.67 87.66 0.67 11.12 16 4 O -0.57 -19.85 13.45 -3.06 -0.04 -19.89 16 5 N -0.66 -10.40 5.34 -303.58 -1.62 -12.02 16 6 C 0.13 2.91 6.29 38.11 0.24 3.15 16 7 C -0.10 -1.47 9.96 22.44 0.22 -1.25 16 8 C -0.09 -1.43 10.02 22.21 0.22 -1.21 16 9 C -0.11 -2.74 7.90 22.54 0.18 -2.56 16 10 C -0.13 -4.54 5.58 -20.10 -0.11 -4.65 16 11 C 0.55 25.84 7.58 86.79 0.66 26.49 16 12 O -0.60 -33.91 17.10 -3.87 -0.07 -33.98 16 13 N -0.61 -27.63 3.33 -814.41 -2.71 -30.34 16 14 C 0.10 3.59 5.07 86.85 0.44 4.03 16 15 C -0.11 -4.50 6.23 31.98 0.20 -4.30 16 16 C 0.24 11.93 0.85 -10.35 -0.01 11.92 16 17 O -0.58 -30.20 13.08 -148.98 -1.95 -32.14 16 18 C -0.56 -30.49 8.11 25.60 0.21 -30.28 16 19 H 0.07 3.60 7.77 -2.91 -0.02 3.57 16 20 C 0.02 1.29 5.27 84.65 0.45 1.73 16 21 N -0.92 -51.88 10.96 21.44 0.24 -51.64 16 22 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 26 C 0.12 6.37 5.39 86.68 0.47 6.84 16 27 C -0.10 -3.35 8.24 22.66 0.19 -3.16 16 28 H 0.04 0.75 8.10 -2.39 -0.02 0.74 16 29 H 0.04 0.82 8.10 -2.39 -0.02 0.80 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.43 2.27 8.82 -92.71 -0.82 1.45 16 34 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 35 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.15 3.36 5.15 -2.91 -0.01 3.35 16 37 H 0.10 2.91 6.49 -2.39 -0.02 2.90 16 38 H 0.09 2.74 7.21 -2.39 -0.02 2.72 16 39 H 0.08 3.10 8.03 -2.39 -0.02 3.08 16 40 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 41 H 0.38 20.48 7.24 -74.06 -0.54 19.94 16 42 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.03 1.96 8.00 -2.39 -0.02 1.94 16 44 H 0.03 1.71 7.81 -2.39 -0.02 1.69 16 45 H 0.10 4.43 6.17 -2.91 -0.02 4.41 16 Total: -1.00 -86.04 369.81 0.43 -85.60 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -0.31 Total: 33.46 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 4.87 Total: 15.28 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -4.10 Total: -94.00 kcal Atomic # 8 Polarization: -83.96 SS G_CDS: -2.06 Total: -86.01 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -86.04 0.43 -85.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.315 kcal (2) G-P(sol) polarization free energy of solvation -86.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds