Wall clock time and date at job start Tue Mar 31 2020 16:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.46823 * 2 1 4 4 O 1.21288 * 120.00053 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00404 * 180.02562 * 3 2 1 6 6 C 1.39956 * 120.00148 * 175.56364 * 5 3 2 7 7 C 1.38983 * 119.99858 * 329.92917 * 6 5 3 8 8 C 1.38220 * 120.22292 * 179.97438 * 7 6 5 9 9 C 1.38026 * 120.21941 * 0.02662 * 8 7 6 10 10 C 1.39572 * 119.99666 * 359.97101 * 9 8 7 11 11 C 1.47863 * 120.10923 * 180.02562 * 10 9 8 12 12 O 1.21545 * 119.99947 * 8.68403 * 11 10 9 13 13 N 1.34780 * 119.99949 * 188.68497 * 11 10 9 14 14 C 1.47027 * 125.64576 * 354.75347 * 13 11 10 15 15 C 1.54327 * 107.40063 * 178.82962 * 14 13 11 16 16 C 1.55404 * 102.82741 * 337.98166 * 15 14 13 17 17 O 1.42906 * 110.88814 * 277.26509 * 16 15 14 18 18 C 1.50699 * 111.07214 * 153.48664 * 16 15 14 19 19 H 1.08002 * 119.99919 * 6.20940 * 18 16 15 20 20 C 1.37877 * 120.00095 * 186.20643 * 18 16 15 21 21 N 1.31514 * 120.00200 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00104 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47106 * 119.99840 * 22 20 18 25 25 H 1.48505 * 109.47084 * 240.00340 * 22 20 18 26 26 C 1.47422 * 125.64987 * 174.72050 * 13 11 10 27 27 C 1.38596 * 119.99791 * 150.20939 * 6 5 3 28 28 H 1.09001 * 109.47529 * 299.99204 * 1 2 3 29 29 H 1.08998 * 109.47541 * 60.00083 * 1 2 3 30 30 H 1.09011 * 109.46690 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47529 * 240.00796 * 2 1 3 32 32 H 1.08998 * 109.47541 * 119.99917 * 2 1 3 33 33 H 0.96997 * 119.99673 * 355.55891 * 5 3 2 34 34 H 1.08000 * 119.89426 * 359.97438 * 7 6 5 35 35 H 1.07993 * 119.89035 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.99963 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.88577 * 298.32324 * 14 13 11 38 38 H 1.08999 * 109.88068 * 59.34213 * 14 13 11 39 39 H 1.09003 * 110.71635 * 96.24579 * 15 14 13 40 40 H 1.08993 * 110.72016 * 219.52410 * 15 14 13 41 41 H 0.96707 * 113.99662 * 173.68836 * 17 16 15 42 42 H 0.96994 * 120.00418 * 179.97438 * 21 20 18 43 43 H 1.09004 * 110.36151 * 322.99326 * 26 13 11 44 44 H 1.08999 * 110.37006 * 85.20840 * 26 13 11 45 45 H 1.08001 * 120.11319 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2440 2.3427 0.0005 5 7 3.3573 1.6673 -0.0005 6 6 3.8243 2.9833 -0.0943 7 6 3.0826 3.9365 -0.7820 8 6 3.5392 5.2377 -0.8770 9 6 4.7350 5.5989 -0.2900 10 6 5.4872 4.6490 0.4028 11 6 6.7684 5.0334 1.0331 12 8 7.0926 6.2036 1.0863 13 7 7.5768 4.0861 1.5486 14 6 7.2620 2.6535 1.6499 15 6 8.4879 1.9546 2.2747 16 6 9.6431 2.9492 1.9726 17 8 10.1453 2.7598 0.6482 18 6 10.7480 2.8213 2.9895 19 1 10.7108 2.0376 3.7316 20 6 11.8063 3.7049 2.9724 21 7 11.8514 4.6596 2.0691 22 14 13.1754 3.5469 4.2334 23 1 12.8901 2.4002 5.1328 24 1 14.4666 3.3190 3.5362 25 1 13.2582 4.7953 5.0333 26 6 8.9233 4.3146 2.1035 27 6 5.0292 3.3345 0.4937 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9872 0.9326 0.0642 34 1 2.1463 3.6598 -1.2437 35 1 2.9583 5.9741 -1.4123 36 1 5.0887 6.6165 -0.3668 37 1 6.3890 2.5099 2.2866 38 1 7.0684 2.2455 0.6579 39 1 8.3559 1.8327 3.3498 40 1 8.6690 0.9925 1.7957 41 1 10.8001 3.4181 0.3779 42 1 12.5957 5.2814 2.0573 43 1 9.4472 5.0765 1.5262 44 1 8.8569 4.6116 3.1502 45 1 5.6094 2.5941 1.0243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592844198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:43 Heat of formation + Delta-G solvation = -70.804459 kcal Electronic energy + Delta-G solvation = -28563.958797 eV Core-core repulsion = 24547.172140 eV Total energy + Delta-G solvation = -4016.786656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.87629 -39.80628 -38.17197 -37.11950 -34.91952 -34.48828 -33.21937 -32.27715 -31.42792 -30.08486 -29.65842 -27.90524 -25.52410 -25.03393 -24.13911 -22.25910 -22.11198 -20.72474 -19.79509 -19.34707 -17.71449 -17.43293 -17.12490 -16.41449 -16.02236 -15.85384 -15.43016 -15.17900 -14.94262 -14.53128 -14.30350 -14.22595 -13.72029 -13.64777 -13.34492 -13.07643 -12.93559 -12.74730 -12.52686 -12.30084 -12.12748 -11.89339 -11.78975 -11.58840 -11.54820 -11.17838 -11.06749 -10.77824 -10.66601 -10.50438 -10.47228 -10.23867 -10.09857 -9.41452 -9.40082 -8.92143 -8.74132 -8.43304 -8.23047 -7.85049 -6.32053 -4.41986 0.99313 1.23011 2.30689 2.74989 3.16921 3.21783 3.26462 3.29209 3.56148 4.01682 4.23200 4.27600 4.64112 4.68564 4.73301 4.85599 4.95125 5.08689 5.16669 5.27316 5.31047 5.40533 5.42310 5.43124 5.47811 5.54106 5.64254 5.78793 5.84840 5.88658 6.08916 6.12911 6.24506 6.37822 6.39848 6.48142 6.63490 6.78547 6.87730 6.96457 7.10824 7.19116 7.29675 7.69682 7.81613 7.96303 8.13374 8.61187 8.67900 9.24379 9.33068 10.75115 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018939 B = 0.002828 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.038909 B = 9899.174213 C =11017.551216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.510 3.490 4 O -0.521 6.521 5 N -0.672 5.672 6 C 0.132 3.868 7 C -0.107 4.107 8 C -0.112 4.112 9 C -0.079 4.079 10 C -0.100 4.100 11 C 0.562 3.438 12 O -0.545 6.545 13 N -0.602 5.602 14 C 0.095 3.905 15 C -0.121 4.121 16 C 0.249 3.751 17 O -0.583 6.583 18 C -0.538 4.538 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.892 5.892 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.095 3.905 27 C -0.151 4.151 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.412 0.588 34 H 0.138 0.862 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.382 0.618 42 H 0.270 0.730 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.620 -9.254 -4.996 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.298 3.702 4 O -0.397 6.397 5 N -0.317 5.317 6 C 0.039 3.961 7 C -0.128 4.128 8 C -0.130 4.130 9 C -0.098 4.098 10 C -0.104 4.104 11 C 0.351 3.649 12 O -0.424 6.424 13 N -0.333 5.333 14 C -0.028 4.028 15 C -0.158 4.158 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.576 4.576 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.530 5.530 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.026 4.026 27 C -0.171 4.171 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.248 0.752 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.232 0.768 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -18.392 -8.335 -5.037 20.811 hybrid contribution 1.505 0.130 0.695 1.663 sum -16.887 -8.205 -4.342 19.270 Atomic orbital electron populations 1.21544 0.92698 1.01843 1.03499 1.21655 0.98927 0.92918 1.04834 1.21017 0.81523 0.92394 0.75273 1.90711 1.55094 1.46338 1.47516 1.43590 1.07984 1.07143 1.72985 1.17635 0.94934 0.84847 0.98702 1.21355 1.00484 0.93008 0.97921 1.20998 0.95977 0.95952 1.00123 1.21284 0.93522 0.99753 0.95269 1.19844 0.95916 0.93645 1.01013 1.17875 0.83302 0.84924 0.78785 1.90744 1.74813 1.17599 1.59289 1.48637 1.18697 1.07082 1.58910 1.22442 0.98299 0.82269 0.99812 1.22744 0.93509 0.99208 1.00385 1.19678 0.89692 0.87566 0.82219 1.86102 1.62540 1.57599 1.32890 1.21473 1.05770 1.15221 1.15152 0.91443 1.25086 0.98185 0.94282 0.95703 1.69716 1.32061 1.16842 1.34412 0.86348 0.81375 0.78170 0.81008 1.19584 1.20743 1.20757 1.23326 0.78773 1.02492 0.98020 1.22536 0.96729 0.97644 1.00174 0.91848 0.91897 0.91833 0.88442 0.88461 0.75188 0.84409 0.85209 0.84673 0.91885 0.91278 0.90209 0.90501 0.76829 0.91992 0.89379 0.91927 0.81733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.15 0.34 -0.52 16 2 C -0.14 -0.79 6.42 -27.89 -0.18 -0.97 16 3 C 0.51 4.90 7.60 -10.98 -0.08 4.81 16 4 O -0.52 -6.96 13.41 5.55 0.07 -6.89 16 5 N -0.67 -6.19 5.35 -9.89 -0.05 -6.25 16 6 C 0.13 1.66 6.34 -83.74 -0.53 1.13 16 7 C -0.11 -1.40 8.67 -39.31 -0.34 -1.74 16 8 C -0.11 -1.43 10.02 -39.67 -0.40 -1.83 16 9 C -0.08 -1.19 9.59 -39.16 -0.38 -1.56 16 10 C -0.10 -1.68 5.87 -104.99 -0.62 -2.29 16 11 C 0.56 11.56 7.80 -12.32 -0.10 11.46 16 12 O -0.55 -13.02 16.68 5.33 0.09 -12.93 16 13 N -0.60 -12.19 3.33 -174.81 -0.58 -12.77 16 14 C 0.09 1.54 4.87 -3.06 -0.01 1.52 16 15 C -0.12 -2.21 6.15 -24.76 -0.15 -2.36 16 16 C 0.25 5.76 0.87 -89.49 -0.08 5.69 16 17 O -0.58 -14.23 13.16 -35.23 -0.46 -14.69 16 18 C -0.54 -13.53 8.28 -34.44 -0.29 -13.82 16 19 H 0.07 1.66 7.79 -52.49 -0.41 1.26 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 21 N -0.89 -23.36 10.69 55.43 0.59 -22.77 16 22 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.09 2.23 5.37 -2.53 -0.01 2.22 16 27 C -0.15 -2.09 8.49 -38.98 -0.33 -2.42 16 28 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 2.46 8.80 -40.82 -0.36 2.10 16 34 H 0.14 1.78 6.13 -52.49 -0.32 1.45 16 35 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.14 2.04 7.67 -52.48 -0.40 1.63 16 37 H 0.06 0.86 6.78 -51.93 -0.35 0.50 16 38 H 0.07 1.02 6.68 -51.93 -0.35 0.68 16 39 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.38 9.67 7.57 45.56 0.34 10.01 16 42 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 43 H 0.09 2.34 7.38 -51.93 -0.38 1.96 16 44 H 0.06 1.53 8.03 -51.93 -0.42 1.11 16 45 H 0.17 2.05 2.78 -56.63 -0.16 1.90 16 LS Contribution 367.10 15.07 5.53 5.53 Total: -1.00 -31.99 367.10 -8.39 -40.38 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -5.31 Total: 14.41 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -3.25 Total: 1.03 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.04 Total: -41.79 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.30 Total: -34.51 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.99 -8.39 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.423 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds