Wall clock time and date at job start Tue Mar 31 2020 16:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.46823 * 2 1 4 4 O 1.21288 * 120.00053 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00404 * 180.02562 * 3 2 1 6 6 C 1.39956 * 120.00148 * 175.56364 * 5 3 2 7 7 C 1.38983 * 119.99858 * 329.92917 * 6 5 3 8 8 C 1.38220 * 120.22292 * 179.97438 * 7 6 5 9 9 C 1.38026 * 120.21941 * 0.02662 * 8 7 6 10 10 C 1.39572 * 119.99666 * 359.97101 * 9 8 7 11 11 C 1.47863 * 120.10923 * 180.02562 * 10 9 8 12 12 O 1.21545 * 119.99947 * 8.68403 * 11 10 9 13 13 N 1.34780 * 119.99949 * 188.68497 * 11 10 9 14 14 C 1.47027 * 125.64576 * 354.75347 * 13 11 10 15 15 C 1.54327 * 107.40063 * 178.82962 * 14 13 11 16 16 C 1.55404 * 102.82741 * 337.98166 * 15 14 13 17 17 O 1.42906 * 110.88814 * 277.26509 * 16 15 14 18 18 C 1.50699 * 111.07214 * 153.48664 * 16 15 14 19 19 H 1.08002 * 119.99919 * 6.20940 * 18 16 15 20 20 C 1.37877 * 120.00095 * 186.20643 * 18 16 15 21 21 N 1.31514 * 120.00200 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00104 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46976 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47106 * 119.99840 * 22 20 18 25 25 H 1.48505 * 109.47084 * 240.00340 * 22 20 18 26 26 C 1.47422 * 125.64987 * 174.72050 * 13 11 10 27 27 C 1.38596 * 119.99791 * 150.20939 * 6 5 3 28 28 H 1.09001 * 109.47529 * 299.99204 * 1 2 3 29 29 H 1.08998 * 109.47541 * 60.00083 * 1 2 3 30 30 H 1.09011 * 109.46690 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47529 * 240.00796 * 2 1 3 32 32 H 1.08998 * 109.47541 * 119.99917 * 2 1 3 33 33 H 0.96997 * 119.99673 * 355.55891 * 5 3 2 34 34 H 1.08000 * 119.89426 * 359.97438 * 7 6 5 35 35 H 1.07993 * 119.89035 * 180.02562 * 8 7 6 36 36 H 1.08004 * 119.99963 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.88577 * 298.32324 * 14 13 11 38 38 H 1.08999 * 109.88068 * 59.34213 * 14 13 11 39 39 H 1.09003 * 110.71635 * 96.24579 * 15 14 13 40 40 H 1.08993 * 110.72016 * 219.52410 * 15 14 13 41 41 H 0.96707 * 113.99662 * 173.68836 * 17 16 15 42 42 H 0.96994 * 120.00418 * 179.97438 * 21 20 18 43 43 H 1.09004 * 110.36151 * 322.99326 * 26 13 11 44 44 H 1.08999 * 110.37006 * 85.20840 * 26 13 11 45 45 H 1.08001 * 120.11319 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2440 2.3427 0.0005 5 7 3.3573 1.6673 -0.0005 6 6 3.8243 2.9833 -0.0943 7 6 3.0826 3.9365 -0.7820 8 6 3.5392 5.2377 -0.8770 9 6 4.7350 5.5989 -0.2900 10 6 5.4872 4.6490 0.4028 11 6 6.7684 5.0334 1.0331 12 8 7.0926 6.2036 1.0863 13 7 7.5768 4.0861 1.5486 14 6 7.2620 2.6535 1.6499 15 6 8.4879 1.9546 2.2747 16 6 9.6431 2.9492 1.9726 17 8 10.1453 2.7598 0.6482 18 6 10.7480 2.8213 2.9895 19 1 10.7108 2.0376 3.7316 20 6 11.8063 3.7049 2.9724 21 7 11.8514 4.6596 2.0691 22 14 13.1754 3.5469 4.2334 23 1 12.8901 2.4002 5.1328 24 1 14.4666 3.3190 3.5362 25 1 13.2582 4.7953 5.0333 26 6 8.9233 4.3146 2.1035 27 6 5.0292 3.3345 0.4937 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9872 0.9326 0.0642 34 1 2.1463 3.6598 -1.2437 35 1 2.9583 5.9741 -1.4123 36 1 5.0887 6.6165 -0.3668 37 1 6.3890 2.5099 2.2866 38 1 7.0684 2.2455 0.6579 39 1 8.3559 1.8327 3.3498 40 1 8.6690 0.9925 1.7957 41 1 10.8001 3.4181 0.3779 42 1 12.5957 5.2814 2.0573 43 1 9.4472 5.0765 1.5262 44 1 8.8569 4.6116 3.1502 45 1 5.6094 2.5941 1.0243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:42 Heat of formation + Delta-G solvation = -94.017012 kcal Electronic energy + Delta-G solvation = -28564.965368 eV Core-core repulsion = 24547.172140 eV Total energy + Delta-G solvation = -4017.793228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.90640 -41.09347 -39.43734 -38.69793 -36.23981 -35.82287 -34.23104 -33.75697 -32.74335 -31.60247 -30.65599 -29.55363 -27.26009 -25.73531 -25.55987 -23.50751 -23.20818 -21.63776 -21.47605 -20.62382 -19.12181 -18.58242 -18.47692 -17.47751 -17.33758 -17.04609 -16.76245 -16.63529 -16.46338 -16.00075 -15.45833 -15.22280 -15.02341 -14.81290 -14.73722 -14.58387 -14.33173 -13.86200 -13.67692 -13.48070 -13.32159 -13.14195 -12.97127 -12.88786 -12.73238 -12.57787 -12.37490 -12.22276 -12.14023 -11.98152 -11.93284 -11.58046 -11.17186 -11.09736 -10.80921 -10.64244 -10.30700 -10.04787 -9.58633 -9.16425 -8.25122 -6.41937 -0.20048 0.20595 1.40709 1.44601 1.50981 1.54846 1.84501 1.98789 2.06345 2.38668 2.81626 3.01576 3.42924 3.66565 3.69849 3.83158 4.07089 4.12863 4.15885 4.18523 4.23907 4.30362 4.31998 4.37819 4.46468 4.50564 4.71624 4.78366 4.80162 5.03079 5.04300 5.05736 5.09487 5.11323 5.21563 5.27388 5.32231 5.35691 5.41486 5.43111 5.49022 5.75564 5.89330 6.06469 6.41830 6.55697 6.68160 7.07263 7.12267 7.26689 7.34824 8.80202 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018939 B = 0.002828 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.038909 B = 9899.174213 C =11017.551216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.506 3.494 4 O -0.563 6.563 5 N -0.661 5.661 6 C 0.139 3.861 7 C -0.109 4.109 8 C -0.103 4.103 9 C -0.093 4.093 10 C -0.121 4.121 11 C 0.555 3.445 12 O -0.595 6.595 13 N -0.605 5.605 14 C 0.093 3.907 15 C -0.113 4.113 16 C 0.233 3.767 17 O -0.585 6.585 18 C -0.552 4.552 19 H 0.072 0.928 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.963 3.037 23 H -0.261 1.261 24 H -0.281 1.281 25 H -0.286 1.286 26 C 0.107 3.893 27 C -0.144 4.144 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.430 0.570 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.373 0.627 42 H 0.268 0.732 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.394 -12.599 -4.921 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.296 3.704 4 O -0.441 6.441 5 N -0.307 5.307 6 C 0.044 3.956 7 C -0.129 4.129 8 C -0.121 4.121 9 C -0.112 4.112 10 C -0.125 4.125 11 C 0.346 3.654 12 O -0.478 6.478 13 N -0.336 5.336 14 C -0.028 4.028 15 C -0.151 4.151 16 C 0.192 3.808 17 O -0.393 6.393 18 C -0.590 4.590 19 H 0.090 0.910 20 C -0.177 4.177 21 N -0.556 5.556 22 Si 0.789 3.211 23 H -0.185 1.185 24 H -0.207 1.207 25 H -0.212 1.212 26 C -0.016 4.016 27 C -0.164 4.164 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.270 0.730 34 H 0.161 0.839 35 H 0.174 0.826 36 H 0.143 0.857 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.221 0.779 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.176 -11.767 -4.958 23.877 hybrid contribution 1.967 1.154 0.638 2.369 sum -18.209 -10.613 -4.320 21.514 Atomic orbital electron populations 1.21565 0.93477 1.02804 1.01939 1.21735 0.98085 0.90194 1.07358 1.21847 0.80999 0.93720 0.73785 1.90700 1.56073 1.47978 1.49364 1.43591 1.08525 1.06262 1.72356 1.17681 0.94112 0.86381 0.97417 1.21568 1.00552 0.93178 0.97635 1.21225 0.94971 0.96691 0.99249 1.21312 0.94516 0.99283 0.96131 1.19604 0.94599 0.95538 1.02738 1.18577 0.84383 0.84286 0.78162 1.90701 1.76203 1.19683 1.61180 1.48675 1.17375 1.08996 1.58563 1.22744 0.98744 0.79460 1.01837 1.22758 0.91834 0.98849 1.01622 1.19917 0.90726 0.88880 0.81238 1.86093 1.62273 1.57200 1.33709 1.21832 1.06452 1.15103 1.15647 0.91028 1.25838 1.00401 0.94103 0.97311 1.69844 1.32512 1.17454 1.35795 0.85426 0.78729 0.78046 0.78937 1.18528 1.20683 1.21178 1.22898 0.80676 1.01845 0.96168 1.22518 0.97245 0.96492 1.00130 0.93615 0.93343 0.89559 0.85690 0.85827 0.73001 0.83948 0.82582 0.85716 0.88054 0.89006 0.88996 0.88631 0.77900 0.92262 0.93582 0.93858 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.20 71.98 0.66 -0.71 16 2 C -0.13 -0.93 6.42 29.85 0.19 -0.74 16 3 C 0.51 8.08 7.60 87.66 0.67 8.75 16 4 O -0.56 -13.94 13.41 -3.05 -0.04 -13.98 16 5 N -0.66 -9.65 5.35 -303.60 -1.62 -11.28 16 6 C 0.14 3.09 6.34 38.11 0.24 3.33 16 7 C -0.11 -2.60 8.67 22.44 0.19 -2.41 16 8 C -0.10 -2.50 10.02 22.21 0.22 -2.27 16 9 C -0.09 -2.80 9.59 22.54 0.22 -2.59 16 10 C -0.12 -3.99 5.87 -20.10 -0.12 -4.11 16 11 C 0.55 23.41 7.80 86.79 0.68 24.09 16 12 O -0.59 -30.12 16.68 -3.86 -0.06 -30.18 16 13 N -0.61 -24.65 3.33 -825.25 -2.75 -27.40 16 14 C 0.09 2.79 4.87 86.73 0.42 3.21 16 15 C -0.11 -3.87 6.15 31.87 0.20 -3.67 16 16 C 0.23 10.79 0.87 -10.06 -0.01 10.79 16 17 O -0.59 -28.87 13.16 -148.98 -1.96 -30.83 16 18 C -0.55 -27.81 8.28 25.60 0.21 -27.60 16 19 H 0.07 3.46 7.79 -2.91 -0.02 3.44 16 20 C 0.02 1.25 5.29 84.65 0.45 1.70 16 21 N -0.92 -49.77 10.69 21.45 0.23 -49.54 16 22 Si 0.96 41.25 29.54 68.60 2.03 43.28 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 26 C 0.11 5.21 5.37 86.86 0.47 5.68 16 27 C -0.14 -3.63 8.49 22.66 0.19 -3.44 16 28 H 0.04 0.61 8.10 -2.39 -0.02 0.59 16 29 H 0.05 0.61 8.10 -2.39 -0.02 0.59 16 30 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.43 3.07 8.80 -92.71 -0.82 2.25 16 34 H 0.14 3.36 6.13 -2.91 -0.02 3.34 16 35 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.12 3.95 7.67 -2.91 -0.02 3.93 16 37 H 0.10 2.32 6.78 -2.39 -0.02 2.30 16 38 H 0.09 2.38 6.68 -2.39 -0.02 2.36 16 39 H 0.09 2.91 8.04 -2.39 -0.02 2.89 16 40 H 0.10 2.92 8.14 -2.39 -0.02 2.91 16 41 H 0.37 19.60 7.57 -74.05 -0.56 19.04 16 42 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 43 H 0.05 2.60 7.38 -2.39 -0.02 2.59 16 44 H 0.04 2.22 8.03 -2.39 -0.02 2.20 16 45 H 0.18 3.80 2.78 -6.80 -0.02 3.78 16 Total: -1.00 -73.85 367.10 0.37 -73.49 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: -0.34 Total: 36.42 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 4.88 Total: 10.01 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -4.14 Total: -88.21 kcal Atomic # 8 Polarization: -72.92 SS G_CDS: -2.07 Total: -74.99 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -73.85 0.37 -73.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.529 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds