Wall clock time and date at job start Tue Mar 31 2020 17:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47367 * 2 1 4 4 N 1.46499 * 109.47046 * 120.00747 * 2 1 3 5 5 C 1.34773 * 119.99895 * 274.24058 * 4 2 1 6 6 O 1.21365 * 120.00030 * 359.72791 * 5 4 2 7 7 C 1.49350 * 120.00480 * 179.72509 * 5 4 2 8 8 O 1.21379 * 119.99602 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00442 * 180.02562 * 7 5 4 10 10 C 1.39748 * 120.00286 * 173.38550 * 9 7 5 11 11 C 1.39337 * 119.95636 * 148.21956 * 10 9 7 12 12 C 1.38471 * 120.42725 * 179.97438 * 11 10 9 13 13 C 1.37697 * 120.32096 * 359.97438 * 12 11 10 14 14 C 1.40739 * 119.90252 * 0.02562 * 13 12 11 15 15 C 1.41414 * 120.21031 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00176 * 206.15369 * 15 14 13 17 17 C 1.39929 * 119.99642 * 26.15454 * 15 14 13 18 18 N 1.30829 * 120.00128 * 18.12191 * 17 15 14 19 19 Si 1.86805 * 119.99792 * 198.12637 * 17 15 14 20 20 H 1.48494 * 109.47233 * 59.99467 * 19 17 15 21 21 H 1.48499 * 109.46896 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46706 * 299.99712 * 19 17 15 23 23 C 1.38305 * 119.94633 * 327.94828 * 10 9 7 24 24 C 1.52999 * 109.46815 * 240.00350 * 2 1 3 25 25 C 1.53003 * 115.55290 * 179.59132 * 24 2 1 26 26 O 1.42904 * 109.46849 * 294.43160 * 25 24 2 27 27 C 1.53009 * 117.50202 * 33.92130 * 24 2 1 28 28 C 1.53003 * 117.50164 * 325.25918 * 24 2 1 29 29 H 1.09004 * 109.47210 * 59.99169 * 1 2 3 30 30 H 1.08994 * 109.47367 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46689 * 299.99733 * 1 2 3 32 32 H 0.96998 * 120.00121 * 93.97371 * 4 2 1 33 33 H 0.96996 * 119.99867 * 353.37639 * 9 7 5 34 34 H 1.08006 * 119.78396 * 359.96144 * 11 10 9 35 35 H 1.07992 * 119.83904 * 180.02562 * 12 11 10 36 36 H 1.08004 * 120.04290 * 179.97438 * 13 12 11 37 37 H 0.97005 * 119.99717 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.17079 * 359.97438 * 23 10 9 39 39 H 1.09004 * 109.46912 * 54.42826 * 25 24 2 40 40 H 1.08991 * 109.47358 * 174.43519 * 25 24 2 41 41 H 0.96698 * 113.99631 * 179.97438 * 26 25 24 42 42 H 1.09001 * 117.48900 * 359.97438 * 27 24 2 43 43 H 1.08996 * 117.50040 * 145.01454 * 27 24 2 44 44 H 1.08990 * 117.50388 * 214.97860 * 28 24 2 45 45 H 1.09005 * 117.49738 * 359.97438 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1616 -0.0149 2.3533 6 8 1.8907 1.1671 2.4032 7 6 2.6535 -0.7204 3.5742 8 8 2.9248 -1.9024 3.5242 9 7 2.7963 -0.0447 4.7316 10 6 3.1228 -0.7297 5.9051 11 6 3.8905 -0.1041 6.8852 12 6 4.2193 -0.7736 8.0519 13 6 3.7901 -2.0659 8.2564 14 6 3.0138 -2.7109 7.2755 15 6 2.5700 -4.0381 7.4785 16 1 2.3616 -4.6735 6.6304 17 6 2.4009 -4.5281 8.7782 18 7 2.3026 -3.6964 9.7833 19 14 2.3156 -6.3700 9.0782 20 1 3.5755 -7.0057 8.6161 21 1 2.1351 -6.6272 10.5296 22 1 1.1687 -6.9411 8.3274 23 6 2.6785 -2.0257 6.0943 24 6 2.0400 -0.7212 -1.2493 25 6 3.5613 -0.7937 -1.3947 26 8 4.0857 0.5231 -1.5767 27 6 1.2136 -0.5859 -2.5300 28 6 1.2240 -1.9098 -1.7615 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 2.2349 -1.6354 1.1562 33 1 2.6725 0.9172 4.7500 34 1 4.2316 0.9094 6.7338 35 1 4.8145 -0.2795 8.8054 36 1 4.0495 -2.5840 9.1679 37 1 2.1858 -4.0362 10.6843 38 1 2.0793 -2.5100 5.3375 39 1 3.9916 -1.2351 -0.4957 40 1 3.8149 -1.4083 -2.2584 41 1 5.0472 0.5533 -1.6757 42 1 0.3065 0.0165 -2.4822 43 1 1.7538 -0.5489 -3.4759 44 1 1.7709 -2.7432 -2.2022 45 1 0.3240 -2.1783 -1.2081 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595130000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:53 Heat of formation + Delta-G solvation = -69.360622 kcal Electronic energy + Delta-G solvation = -27924.971229 eV Core-core repulsion = 23908.247182 eV Total energy + Delta-G solvation = -4016.724047 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.75750 -39.61375 -38.37162 -37.11305 -36.33093 -34.93957 -34.16388 -33.02279 -30.34668 -29.87030 -28.49689 -27.69712 -25.39103 -24.98261 -23.32437 -22.86009 -21.24569 -20.81844 -19.95035 -19.32525 -18.26425 -17.63501 -17.44574 -16.56227 -16.42642 -15.77867 -15.49115 -15.29086 -15.08977 -14.84385 -14.61627 -14.22726 -13.88801 -13.85228 -13.31007 -13.09296 -12.97469 -12.85095 -12.56403 -12.21702 -11.99000 -11.75679 -11.55700 -11.44177 -11.35038 -11.29227 -11.14160 -10.90452 -10.82535 -10.52878 -10.40074 -10.19874 -10.07724 -9.70208 -9.45209 -9.30825 -9.10144 -8.99218 -7.49512 -6.98549 -6.75935 -4.36824 1.55185 2.46267 2.76720 2.92485 3.07486 3.10582 3.20239 3.24854 3.58295 3.89712 3.94629 3.96826 4.23068 4.34391 4.49267 4.61502 4.72645 4.79744 5.02776 5.05561 5.13428 5.26661 5.38194 5.43124 5.49214 5.66111 5.66791 5.73491 5.79573 6.02384 6.19992 6.23399 6.35467 6.59938 6.83099 6.97844 7.00731 7.13388 7.22138 7.31908 7.45341 7.64776 7.84108 7.89609 8.04170 8.09018 8.16196 8.45266 8.63185 8.89185 8.93554 10.19000 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016199 B = 0.002577 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.089671 B =10864.745632 C =11776.266089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.183 3.817 3 H 0.102 0.898 4 N -0.696 5.696 5 C 0.513 3.487 6 O -0.522 6.522 7 C 0.496 3.504 8 O -0.500 6.500 9 N -0.633 5.633 10 C 0.146 3.854 11 C -0.256 4.256 12 C -0.090 4.090 13 C -0.169 4.169 14 C 0.122 3.878 15 C -0.461 4.461 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.793 5.793 19 Si 0.908 3.092 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.210 4.210 24 C -0.142 4.142 25 C 0.113 3.887 26 O -0.567 6.567 27 C -0.154 4.154 28 C -0.167 4.167 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.411 0.589 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.281 0.719 38 H 0.108 0.892 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.380 0.620 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 4.357 -19.801 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.079 3.921 3 H 0.119 0.881 4 N -0.349 5.349 5 C 0.294 3.706 6 O -0.398 6.398 7 C 0.277 3.723 8 O -0.374 6.374 9 N -0.278 5.278 10 C 0.055 3.945 11 C -0.278 4.278 12 C -0.109 4.109 13 C -0.188 4.188 14 C 0.119 3.881 15 C -0.490 4.490 16 H 0.097 0.903 17 C -0.141 4.141 18 N -0.418 5.418 19 Si 0.733 3.267 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.232 4.232 24 C -0.143 4.143 25 C 0.035 3.965 26 O -0.373 6.373 27 C -0.191 4.191 28 C -0.204 4.204 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.248 0.752 33 H 0.246 0.754 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.135 0.865 37 H 0.092 0.908 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.227 0.773 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.269 4.532 -19.518 20.078 hybrid contribution 0.551 -0.910 0.200 1.082 sum -0.718 3.622 -19.319 19.669 Atomic orbital electron populations 1.22372 0.94863 1.02684 1.03059 1.20349 0.93628 0.97189 0.80962 0.88053 1.45769 1.65854 1.14502 1.08805 1.20290 0.78634 0.86973 0.84684 1.90740 1.49149 1.15148 1.84762 1.19985 0.80456 0.87491 0.84385 1.90805 1.47258 1.14929 1.84400 1.43144 1.66353 1.11660 1.06638 1.17467 0.98896 0.93471 0.84696 1.20052 1.09985 1.00229 0.97494 1.20463 0.99643 0.95332 0.95504 1.21315 1.01480 0.94729 1.01324 1.17459 0.88332 0.92542 0.89787 1.19531 1.39775 0.97135 0.92567 0.90307 1.25897 0.92304 1.00132 0.95745 1.69823 1.34453 1.36711 1.00849 0.86367 0.79987 0.82622 0.77752 1.18777 1.20364 1.18996 1.20991 1.07277 0.93708 1.01197 1.21602 0.92931 1.03917 0.95849 1.21575 0.90983 0.84307 0.99640 1.86484 1.26529 1.28181 1.96081 1.23086 1.01676 0.99866 0.94515 1.23213 1.02067 0.91769 1.03308 0.91039 0.91801 0.91495 0.75220 0.75358 0.88963 0.88798 0.86521 0.90797 0.87437 0.92831 0.93338 0.77283 0.87906 0.88372 0.88323 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 8.57 37.16 0.32 -1.30 16 2 C 0.18 1.95 2.69 -67.93 -0.18 1.77 16 3 H 0.10 1.31 7.55 -51.93 -0.39 0.92 16 4 N -0.70 -8.63 4.70 -54.27 -0.26 -8.89 16 5 C 0.51 8.01 7.86 -11.63 -0.09 7.92 16 6 O -0.52 -8.89 16.14 5.48 0.09 -8.80 16 7 C 0.50 9.16 7.60 -11.63 -0.09 9.07 16 8 O -0.50 -10.41 14.13 5.47 0.08 -10.34 16 9 N -0.63 -12.11 5.32 -10.34 -0.06 -12.16 16 10 C 0.15 3.34 6.29 -83.82 -0.53 2.81 16 11 C -0.26 -5.68 9.96 -39.09 -0.39 -6.07 16 12 C -0.09 -2.10 10.02 -39.69 -0.40 -2.49 16 13 C -0.17 -4.38 8.68 -38.83 -0.34 -4.72 16 14 C 0.12 3.31 5.55 -106.85 -0.59 2.71 16 15 C -0.46 -12.44 9.04 -37.74 -0.34 -12.78 16 16 H 0.08 2.08 7.91 -52.49 -0.42 1.67 16 17 C 0.08 1.95 5.12 -17.35 -0.09 1.86 16 18 N -0.79 -20.48 11.09 55.55 0.62 -19.87 16 19 Si 0.91 18.80 29.60 -169.99 -5.03 13.76 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.21 -5.39 8.39 -38.66 -0.32 -5.71 16 24 C -0.14 -1.21 1.90 -154.50 -0.29 -1.50 16 25 C 0.11 0.94 6.77 37.16 0.25 1.19 16 26 O -0.57 -5.26 13.60 -35.23 -0.48 -5.74 16 27 C -0.15 -1.06 9.56 -26.68 -0.26 -1.32 16 28 C -0.17 -1.12 9.53 -26.69 -0.25 -1.37 16 29 H 0.07 0.55 6.30 -51.93 -0.33 0.22 16 30 H 0.06 0.54 6.31 -51.93 -0.33 0.22 16 31 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.41 4.80 8.08 -40.82 -0.33 4.47 16 33 H 0.41 6.85 8.30 -40.82 -0.34 6.51 16 34 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.12 3.09 6.29 -52.48 -0.33 2.76 16 37 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 38 H 0.11 2.79 6.35 -52.49 -0.33 2.46 16 39 H 0.05 0.48 7.90 -51.93 -0.41 0.07 16 40 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 41 H 0.38 1.95 9.12 45.56 0.42 2.37 16 42 H 0.10 0.65 6.23 -51.93 -0.32 0.33 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.11 0.70 6.26 -51.93 -0.32 0.38 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -31.40 376.94 -8.06 -39.46 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -5.10 Total: 16.82 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.59 Total: -9.93 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.31 Total: -40.92 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.31 Total: -24.88 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.40 -8.06 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595130000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.899 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds