Wall clock time and date at job start Tue Mar 31 2020 18:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47144 * 2 1 4 4 O 1.42902 * 109.47046 * 240.00182 * 2 1 3 5 5 C 1.52998 * 109.47228 * 119.99984 * 2 1 3 6 6 H 1.08996 * 109.99729 * 301.70862 * 5 2 1 7 7 C 1.54329 * 109.88130 * 62.80202 * 5 2 1 8 8 C 1.55152 * 103.10141 * 141.69602 * 7 5 2 9 9 C 1.54913 * 101.58487 * 324.41285 * 8 7 5 10 10 N 1.47422 * 104.83224 * 37.00576 * 9 8 7 11 11 C 1.34778 * 125.65047 * 155.91150 * 10 9 8 12 12 O 1.21360 * 120.00051 * 176.68352 * 11 10 9 13 13 C 1.49352 * 119.99906 * 356.68912 * 11 10 9 14 14 O 1.21380 * 119.99884 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00064 * 179.97438 * 13 11 10 16 16 C 1.39743 * 120.00073 * 185.06273 * 15 13 11 17 17 C 1.39346 * 119.95586 * 142.64836 * 16 15 13 18 18 C 1.38468 * 120.42360 * 179.97438 * 17 16 15 19 19 C 1.37686 * 120.33127 * 0.04067 * 18 17 16 20 20 C 1.40749 * 119.89846 * 359.97438 * 19 18 17 21 21 C 1.41403 * 120.21267 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00527 * 151.77197 * 21 20 19 23 23 C 1.39935 * 119.99961 * 331.77513 * 21 20 19 24 24 N 1.30832 * 119.99889 * 342.85556 * 23 21 20 25 25 Si 1.86801 * 120.00118 * 162.85360 * 23 21 20 26 26 H 1.48499 * 109.46920 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47219 * 119.99911 * 25 23 21 28 28 H 1.48500 * 109.47073 * 239.99835 * 25 23 21 29 29 C 1.38304 * 119.95110 * 322.37447 * 16 15 13 30 30 H 1.08995 * 109.47256 * 62.78933 * 1 2 3 31 31 H 1.08995 * 109.47256 * 182.79683 * 1 2 3 32 32 H 1.08998 * 109.46676 * 302.79308 * 1 2 3 33 33 H 0.96704 * 113.99733 * 59.99686 * 4 2 1 34 34 H 1.09000 * 110.71819 * 23.24536 * 7 5 2 35 35 H 1.08998 * 110.72042 * 260.15106 * 7 5 2 36 36 H 1.09000 * 111.00336 * 82.48285 * 8 7 5 37 37 H 1.08996 * 111.00930 * 206.33724 * 8 7 5 38 38 H 1.09006 * 110.36895 * 155.84426 * 9 8 7 39 39 H 1.08999 * 110.36353 * 278.17070 * 9 8 7 40 40 H 0.96997 * 119.99979 * 5.06379 * 15 13 11 41 41 H 1.08006 * 119.78285 * 359.97438 * 17 16 15 42 42 H 1.08006 * 119.83603 * 180.02562 * 18 17 16 43 43 H 1.07997 * 120.05511 * 179.97438 * 19 18 17 44 44 H 0.97002 * 119.99801 * 180.02562 * 24 23 21 45 45 H 1.07996 * 120.16439 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.6568 -0.2321 2.1446 7 6 1.5896 -2.1971 1.2238 8 6 2.8179 -2.9497 1.8001 9 6 3.9908 -2.1146 1.2284 10 7 3.5149 -0.7199 1.2667 11 6 4.2977 0.3764 1.3101 12 8 3.7969 1.4814 1.2782 13 6 5.7816 0.2313 1.3975 14 8 6.2825 -0.8739 1.4298 15 7 6.5645 1.3274 1.4404 16 6 7.9554 1.1942 1.4153 17 6 8.7303 2.1176 0.7165 18 6 10.1092 1.9951 0.6857 19 6 10.7301 0.9580 1.3450 20 6 9.9606 0.0172 2.0548 21 6 10.5913 -1.0508 2.7338 22 1 10.1276 -1.4841 3.6076 23 6 11.8165 -1.5462 2.2737 24 7 12.2175 -1.2736 1.0586 25 14 12.8794 -2.5968 3.3944 26 1 12.2052 -2.7579 4.7077 27 1 13.0824 -3.9314 2.7758 28 1 14.1951 -1.9367 3.5904 29 6 8.5611 0.1490 2.0888 30 1 -0.3633 0.4699 -0.9139 31 1 -0.3633 -1.0264 0.0501 32 1 -0.3632 0.5566 0.8639 33 1 1.7210 -0.2700 -1.9980 34 1 1.3836 -2.5199 0.2033 35 1 0.7150 -2.3443 1.8574 36 1 2.8155 -2.9247 2.8898 37 1 2.8544 -3.9758 1.4345 38 1 4.8778 -2.2300 1.8513 39 1 4.2050 -2.4143 0.2025 40 1 6.1626 2.2089 1.4888 41 1 8.2523 2.9342 0.1957 42 1 10.7008 2.7166 0.1414 43 1 11.8058 0.8665 1.3176 44 1 13.0666 -1.6173 0.7395 45 1 7.9620 -0.5646 2.6347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595174650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:49 Heat of formation + Delta-G solvation = -89.784541 kcal Electronic energy + Delta-G solvation = -28607.374108 eV Core-core repulsion = 24589.764413 eV Total energy + Delta-G solvation = -4017.609694 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.82885 -39.36614 -37.86743 -37.10855 -36.52847 -34.54517 -33.05315 -32.06253 -31.44089 -29.84974 -28.54814 -28.05523 -25.48348 -25.22609 -23.40131 -22.27840 -21.36888 -20.85916 -20.18380 -19.27647 -17.96806 -17.49619 -17.20080 -16.66204 -16.16490 -15.51234 -15.26863 -15.13205 -14.81616 -14.66849 -14.40700 -14.02213 -13.75665 -13.53515 -13.28006 -13.01325 -12.92237 -12.74728 -12.40599 -12.38923 -12.19652 -12.07138 -11.70484 -11.61312 -11.36095 -11.12258 -11.06455 -10.88888 -10.82009 -10.64009 -10.51902 -10.16644 -10.00185 -9.78895 -9.39461 -9.06631 -8.85994 -8.72749 -7.45408 -6.99491 -6.73551 -4.34338 1.61868 2.42154 2.76380 2.94261 3.10445 3.16115 3.19277 3.58425 3.73400 3.93609 3.97643 4.39564 4.48798 4.56342 4.62863 4.77012 4.82941 4.91274 5.05165 5.16016 5.26809 5.51295 5.59332 5.60682 5.67229 5.71418 5.83261 5.84733 5.92424 6.11793 6.18816 6.22525 6.37709 6.66604 6.91215 7.00075 7.03063 7.19621 7.25945 7.42692 7.44088 7.67245 7.80382 7.91030 8.06238 8.10918 8.19450 8.50259 8.65315 8.91408 8.95389 10.23448 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.002883 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.775449 B = 9710.492598 C =10783.078100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 H 0.071 0.929 4 O -0.559 6.559 5 C 0.144 3.856 6 H 0.090 0.910 7 C -0.125 4.125 8 C -0.135 4.135 9 C 0.096 3.904 10 N -0.580 5.580 11 C 0.527 3.473 12 O -0.532 6.532 13 C 0.499 3.501 14 O -0.491 6.491 15 N -0.635 5.635 16 C 0.142 3.858 17 C -0.253 4.253 18 C -0.092 4.092 19 C -0.166 4.166 20 C 0.120 3.880 21 C -0.460 4.460 22 H 0.078 0.922 23 C 0.077 3.923 24 N -0.794 5.794 25 Si 0.907 3.093 26 H -0.260 1.260 27 H -0.275 1.275 28 H -0.272 1.272 29 C -0.203 4.203 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.376 0.624 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.410 0.590 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.115 0.885 44 H 0.280 0.720 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.646 -0.468 -1.069 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.026 3.974 3 H 0.089 0.911 4 O -0.364 6.364 5 C 0.041 3.959 6 H 0.108 0.892 7 C -0.163 4.163 8 C -0.173 4.173 9 C -0.026 4.026 10 N -0.313 5.313 11 C 0.311 3.689 12 O -0.410 6.410 13 C 0.280 3.720 14 O -0.365 6.365 15 N -0.280 5.280 16 C 0.051 3.949 17 C -0.274 4.274 18 C -0.111 4.111 19 C -0.186 4.186 20 C 0.117 3.883 21 C -0.490 4.490 22 H 0.096 0.904 23 C -0.141 4.141 24 N -0.420 5.420 25 Si 0.732 3.268 26 H -0.184 1.184 27 H -0.200 1.200 28 H -0.198 1.198 29 C -0.225 4.225 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.245 0.755 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.133 0.867 44 H 0.090 0.910 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -19.058 -1.067 -0.784 19.104 hybrid contribution -0.016 0.378 -0.180 0.419 sum -19.074 -0.688 -0.964 19.111 Atomic orbital electron populations 1.22483 0.95910 1.02924 1.02714 1.22150 0.92700 0.96566 0.85980 0.91066 1.86530 1.77216 1.57078 1.15591 1.21858 0.79866 0.97556 0.96608 0.89197 1.22665 0.98120 0.92575 1.02956 1.22837 0.94141 0.99412 1.00929 1.22734 0.98296 0.78675 1.02873 1.48282 1.06034 1.06900 1.70097 1.19973 0.87777 0.83591 0.77573 1.90696 1.75576 1.24846 1.49849 1.19885 0.87085 0.85637 0.79443 1.90767 1.74542 1.24745 1.46461 1.43087 1.05867 1.08984 1.70108 1.17461 0.79010 0.98685 0.99732 1.20097 0.93995 1.03460 1.09855 1.20460 0.93192 0.97973 0.99453 1.21283 0.99697 0.94617 1.03000 1.17492 0.89941 0.91235 0.89626 1.19546 1.03249 1.14546 1.11633 0.90353 1.25881 0.97603 0.95944 0.94666 1.69839 1.20013 1.37356 1.14758 0.86278 0.79797 0.79464 0.81278 1.18405 1.20029 1.19753 1.21068 0.94586 1.00407 1.06393 0.92065 0.91531 0.91480 0.77743 0.89274 0.90260 0.90653 0.89579 0.87461 0.90641 0.75471 0.89002 0.88824 0.86727 0.90961 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.38 37.16 0.35 -0.93 16 2 C 0.09 0.88 3.24 -26.73 -0.09 0.79 16 3 H 0.07 0.88 6.75 -51.93 -0.35 0.53 16 4 O -0.56 -5.97 12.23 -35.23 -0.43 -6.40 16 5 C 0.14 1.58 2.78 -66.69 -0.19 1.39 16 6 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.13 -1.07 5.27 -24.90 -0.13 -1.20 16 8 C -0.14 -1.27 7.09 -24.58 -0.17 -1.44 16 9 C 0.10 1.27 6.18 -2.53 -0.02 1.26 16 10 N -0.58 -8.20 2.97 -163.20 -0.48 -8.69 16 11 C 0.53 8.85 7.73 -11.63 -0.09 8.76 16 12 O -0.53 -9.23 15.40 5.49 0.08 -9.15 16 13 C 0.50 9.65 7.68 -11.63 -0.09 9.56 16 14 O -0.49 -10.64 11.30 5.47 0.06 -10.58 16 15 N -0.64 -12.38 5.31 -10.34 -0.05 -12.44 16 16 C 0.14 3.28 6.25 -83.82 -0.52 2.75 16 17 C -0.25 -5.65 9.97 -39.08 -0.39 -6.04 16 18 C -0.09 -2.14 10.01 -39.70 -0.40 -2.54 16 19 C -0.17 -4.33 8.67 -38.83 -0.34 -4.67 16 20 C 0.12 3.27 5.53 -106.85 -0.59 2.67 16 21 C -0.46 -12.46 9.04 -37.74 -0.34 -12.80 16 22 H 0.08 2.06 7.90 -52.49 -0.41 1.65 16 23 C 0.08 1.95 5.12 -17.34 -0.09 1.87 16 24 N -0.79 -20.86 11.17 55.55 0.62 -20.24 16 25 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 26 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 29 C -0.20 -5.22 8.42 -38.66 -0.33 -5.54 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.42 7.15 -51.93 -0.37 0.05 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 2.59 9.08 45.56 0.41 3.01 16 34 H 0.09 0.80 7.02 -51.93 -0.36 0.43 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.11 1.64 5.96 -51.93 -0.31 1.33 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.41 6.92 8.30 -40.82 -0.34 6.58 16 41 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 43 H 0.11 3.05 6.42 -52.49 -0.34 2.71 16 44 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 45 H 0.11 2.85 6.39 -52.49 -0.34 2.52 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -31.39 368.03 -8.45 -39.84 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -5.35 Total: 14.29 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.42 Total: -6.10 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.08 Total: -41.36 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.28 Total: -26.13 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.39 -8.45 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595174650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.942 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds