Wall clock time and date at job start Tue Mar 31 2020 18:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47144 * 2 1 4 4 O 1.42902 * 109.47046 * 240.00182 * 2 1 3 5 5 C 1.52998 * 109.47228 * 119.99984 * 2 1 3 6 6 H 1.08996 * 109.99729 * 301.70862 * 5 2 1 7 7 C 1.54329 * 109.88130 * 62.80202 * 5 2 1 8 8 C 1.55152 * 103.10141 * 141.69602 * 7 5 2 9 9 C 1.54913 * 101.58487 * 324.41285 * 8 7 5 10 10 N 1.47422 * 104.83224 * 37.00576 * 9 8 7 11 11 C 1.34778 * 125.65047 * 155.91150 * 10 9 8 12 12 O 1.21360 * 120.00051 * 176.68352 * 11 10 9 13 13 C 1.49352 * 119.99906 * 356.68912 * 11 10 9 14 14 O 1.21380 * 119.99884 * 359.97438 * 13 11 10 15 15 N 1.34773 * 120.00064 * 179.97438 * 13 11 10 16 16 C 1.39743 * 120.00073 * 185.06273 * 15 13 11 17 17 C 1.39346 * 119.95586 * 142.64836 * 16 15 13 18 18 C 1.38468 * 120.42360 * 179.97438 * 17 16 15 19 19 C 1.37686 * 120.33127 * 0.04067 * 18 17 16 20 20 C 1.40749 * 119.89846 * 359.97438 * 19 18 17 21 21 C 1.41403 * 120.21267 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00527 * 151.77197 * 21 20 19 23 23 C 1.39935 * 119.99961 * 331.77513 * 21 20 19 24 24 N 1.30832 * 119.99889 * 342.85556 * 23 21 20 25 25 Si 1.86801 * 120.00118 * 162.85360 * 23 21 20 26 26 H 1.48499 * 109.46920 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47219 * 119.99911 * 25 23 21 28 28 H 1.48500 * 109.47073 * 239.99835 * 25 23 21 29 29 C 1.38304 * 119.95110 * 322.37447 * 16 15 13 30 30 H 1.08995 * 109.47256 * 62.78933 * 1 2 3 31 31 H 1.08995 * 109.47256 * 182.79683 * 1 2 3 32 32 H 1.08998 * 109.46676 * 302.79308 * 1 2 3 33 33 H 0.96704 * 113.99733 * 59.99686 * 4 2 1 34 34 H 1.09000 * 110.71819 * 23.24536 * 7 5 2 35 35 H 1.08998 * 110.72042 * 260.15106 * 7 5 2 36 36 H 1.09000 * 111.00336 * 82.48285 * 8 7 5 37 37 H 1.08996 * 111.00930 * 206.33724 * 8 7 5 38 38 H 1.09006 * 110.36895 * 155.84426 * 9 8 7 39 39 H 1.08999 * 110.36353 * 278.17070 * 9 8 7 40 40 H 0.96997 * 119.99979 * 5.06379 * 15 13 11 41 41 H 1.08006 * 119.78285 * 359.97438 * 17 16 15 42 42 H 1.08006 * 119.83603 * 180.02562 * 18 17 16 43 43 H 1.07997 * 120.05511 * 179.97438 * 19 18 17 44 44 H 0.97002 * 119.99801 * 180.02562 * 24 23 21 45 45 H 1.07996 * 120.16439 * 359.97438 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 1 1.6568 -0.2321 2.1446 7 6 1.5896 -2.1971 1.2238 8 6 2.8179 -2.9497 1.8001 9 6 3.9908 -2.1146 1.2284 10 7 3.5149 -0.7199 1.2667 11 6 4.2977 0.3764 1.3101 12 8 3.7969 1.4814 1.2782 13 6 5.7816 0.2313 1.3975 14 8 6.2825 -0.8739 1.4298 15 7 6.5645 1.3274 1.4404 16 6 7.9554 1.1942 1.4153 17 6 8.7303 2.1176 0.7165 18 6 10.1092 1.9951 0.6857 19 6 10.7301 0.9580 1.3450 20 6 9.9606 0.0172 2.0548 21 6 10.5913 -1.0508 2.7338 22 1 10.1276 -1.4841 3.6076 23 6 11.8165 -1.5462 2.2737 24 7 12.2175 -1.2736 1.0586 25 14 12.8794 -2.5968 3.3944 26 1 12.2052 -2.7579 4.7077 27 1 13.0824 -3.9314 2.7758 28 1 14.1951 -1.9367 3.5904 29 6 8.5611 0.1490 2.0888 30 1 -0.3633 0.4699 -0.9139 31 1 -0.3633 -1.0264 0.0501 32 1 -0.3632 0.5566 0.8639 33 1 1.7210 -0.2700 -1.9980 34 1 1.3836 -2.5199 0.2033 35 1 0.7150 -2.3443 1.8574 36 1 2.8155 -2.9247 2.8898 37 1 2.8544 -3.9758 1.4345 38 1 4.8778 -2.2300 1.8513 39 1 4.2050 -2.4143 0.2025 40 1 6.1626 2.2089 1.4888 41 1 8.2523 2.9342 0.1957 42 1 10.7008 2.7166 0.1414 43 1 11.8058 0.8665 1.3176 44 1 13.0666 -1.6173 0.7395 45 1 7.9620 -0.5646 2.6347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595174650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:48 Heat of formation + Delta-G solvation = -111.678845 kcal Electronic energy + Delta-G solvation = -28608.323516 eV Core-core repulsion = 24589.764413 eV Total energy + Delta-G solvation = -4018.559103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.16908 -40.71859 -39.19943 -38.77847 -37.45554 -36.30340 -34.89123 -33.00601 -32.31622 -31.79552 -30.33427 -28.87455 -27.30401 -26.67149 -24.51155 -23.31824 -22.96251 -22.47448 -21.50134 -20.62418 -19.59813 -18.73222 -18.48033 -17.79865 -17.43484 -17.32484 -16.75455 -16.60013 -16.49886 -15.84533 -15.51346 -15.31457 -15.12427 -14.70446 -14.68612 -14.41795 -14.21044 -14.06103 -13.62403 -13.54533 -13.33149 -13.20582 -13.07470 -12.87419 -12.78183 -12.72057 -12.52909 -12.24199 -11.99151 -11.91485 -11.77197 -11.63132 -11.57362 -11.22144 -10.95560 -10.83387 -10.45169 -9.88628 -9.41230 -8.86879 -8.65382 -6.38043 0.13036 0.91939 0.98365 1.21594 1.37962 1.48612 1.53512 2.06937 2.21849 2.40537 2.71003 3.14192 3.28863 3.54458 3.68176 3.76281 3.81524 4.12673 4.16417 4.28663 4.35874 4.42248 4.52826 4.57335 4.77597 4.86167 4.91813 4.94190 4.95399 4.99336 5.04278 5.06304 5.07580 5.10238 5.13410 5.28082 5.31908 5.35467 5.61938 5.77182 5.99955 6.02512 6.06521 6.23617 6.26941 6.60693 6.66646 6.82556 6.87293 6.95221 6.99971 8.34426 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017833 B = 0.002883 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.775449 B = 9710.492598 C =10783.078100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.045 0.955 4 O -0.577 6.577 5 C 0.131 3.869 6 H 0.100 0.900 7 C -0.113 4.113 8 C -0.125 4.125 9 C 0.090 3.910 10 N -0.574 5.574 11 C 0.529 3.471 12 O -0.541 6.541 13 C 0.494 3.506 14 O -0.519 6.519 15 N -0.630 5.630 16 C 0.147 3.853 17 C -0.245 4.245 18 C -0.089 4.089 19 C -0.189 4.189 20 C 0.092 3.908 21 C -0.500 4.500 22 H 0.069 0.931 23 C 0.037 3.963 24 N -0.826 5.826 25 Si 0.983 3.017 26 H -0.261 1.261 27 H -0.266 1.266 28 H -0.259 1.259 29 C -0.226 4.226 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.390 0.610 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.423 0.577 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.102 0.898 44 H 0.289 0.711 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.654 -0.566 -1.273 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.028 3.972 3 H 0.063 0.937 4 O -0.385 6.385 5 C 0.029 3.971 6 H 0.118 0.882 7 C -0.151 4.151 8 C -0.163 4.163 9 C -0.032 4.032 10 N -0.306 5.306 11 C 0.312 3.688 12 O -0.419 6.419 13 C 0.276 3.724 14 O -0.394 6.394 15 N -0.277 5.277 16 C 0.055 3.945 17 C -0.266 4.266 18 C -0.108 4.108 19 C -0.209 4.209 20 C 0.089 3.911 21 C -0.530 4.530 22 H 0.087 0.913 23 C -0.178 4.178 24 N -0.452 5.452 25 Si 0.803 3.197 26 H -0.184 1.184 27 H -0.191 1.191 28 H -0.184 1.184 29 C -0.247 4.247 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.240 0.760 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.262 0.738 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.120 0.880 44 H 0.100 0.900 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.124 -1.150 -1.007 21.179 hybrid contribution 0.500 0.458 -0.204 0.708 sum -20.624 -0.692 -1.211 20.671 Atomic orbital electron populations 1.22397 0.92984 1.03975 1.03673 1.22091 0.94837 0.94792 0.85511 0.93709 1.86488 1.77875 1.57524 1.16572 1.22294 0.77402 0.99788 0.97622 0.88229 1.22681 0.98568 0.90154 1.03659 1.22833 0.92467 0.99653 1.01356 1.22760 0.99381 0.79126 1.01961 1.48423 1.07643 1.06403 1.68112 1.19380 0.86474 0.84369 0.78623 1.90689 1.75194 1.25112 1.50941 1.20518 0.88560 0.85024 0.78299 1.90768 1.75524 1.25810 1.47340 1.43003 1.04598 1.09983 1.70072 1.17540 0.80747 0.97767 0.98476 1.20496 0.93722 1.03699 1.08674 1.20817 0.94038 0.97469 0.98456 1.21269 0.99162 0.95870 1.04608 1.17826 0.90823 0.91974 0.90496 1.19751 1.05118 1.15840 1.12262 0.91261 1.26729 0.98141 0.96976 0.95956 1.69877 1.20786 1.38387 1.16121 0.85154 0.77907 0.77765 0.78826 1.18420 1.19077 1.18377 1.21030 0.94247 1.01615 1.07817 0.90988 0.90325 0.90750 0.76025 0.89251 0.86982 0.89794 0.87731 0.90123 0.91783 0.73813 0.85359 0.85602 0.88018 0.90043 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.38 71.98 0.68 -1.23 16 2 C 0.09 1.64 3.24 30.60 0.10 1.74 16 3 H 0.04 1.08 6.75 -2.39 -0.02 1.06 16 4 O -0.58 -11.52 12.23 -148.98 -1.82 -13.35 16 5 C 0.13 2.61 2.78 45.25 0.13 2.74 16 6 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 7 C -0.11 -1.58 5.27 31.78 0.17 -1.42 16 8 C -0.13 -2.10 7.09 31.99 0.23 -1.87 16 9 C 0.09 2.40 6.18 86.86 0.54 2.93 16 10 N -0.57 -16.06 2.97 -788.61 -2.34 -18.40 16 11 C 0.53 17.87 7.73 87.24 0.67 18.55 16 12 O -0.54 -18.57 15.40 -3.28 -0.05 -18.62 16 13 C 0.49 19.63 7.68 87.24 0.67 20.30 16 14 O -0.52 -23.63 11.30 -3.34 -0.04 -23.67 16 15 N -0.63 -24.71 5.31 -304.98 -1.62 -26.33 16 16 C 0.15 6.85 6.25 38.16 0.24 7.09 16 17 C -0.25 -10.65 9.97 22.59 0.23 -10.42 16 18 C -0.09 -4.09 10.01 22.19 0.22 -3.87 16 19 C -0.19 -10.13 8.67 22.75 0.20 -9.94 16 20 C 0.09 5.22 5.53 -21.31 -0.12 5.10 16 21 C -0.50 -28.50 9.04 23.46 0.21 -28.28 16 22 H 0.07 3.89 7.90 -2.91 -0.02 3.87 16 23 C 0.04 1.92 5.12 85.25 0.44 2.36 16 24 N -0.83 -44.52 11.17 21.82 0.24 -44.28 16 25 Si 0.98 39.60 29.59 68.60 2.03 41.63 16 26 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 27 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 28 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 29 C -0.23 -12.12 8.42 22.86 0.19 -11.93 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.71 7.15 -2.39 -0.02 0.69 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.39 4.85 9.08 -74.05 -0.67 4.18 16 34 H 0.09 1.31 7.02 -2.39 -0.02 1.29 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 2.61 5.96 -2.38 -0.01 2.59 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 40 H 0.42 14.03 8.30 -92.71 -0.77 13.26 16 41 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 43 H 0.10 5.61 6.42 -2.91 -0.02 5.60 16 44 H 0.29 13.95 8.30 -92.71 -0.77 13.19 16 45 H 0.09 5.21 6.39 -2.91 -0.02 5.20 16 Total: -1.00 -71.37 368.03 0.79 -70.58 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.40 Total: 40.60 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.78 Total: -8.16 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -3.72 Total: -89.01 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -1.91 Total: -55.64 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -71.37 0.79 -70.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595174650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.096 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds