Wall clock time and date at job start Tue Mar 31 2020 16:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46891 * 2 1 4 4 O 1.21293 * 120.00174 * 0.02562 * 3 2 1 5 5 C 1.46858 * 120.00286 * 179.97438 * 3 2 1 6 6 C 1.40061 * 120.08889 * 359.72895 * 5 3 2 7 7 C 1.36615 * 119.89774 * 179.71466 * 6 5 3 8 8 C 1.39250 * 120.09832 * 0.55690 * 7 6 5 9 9 N 1.39155 * 119.90475 * 179.69322 * 8 7 6 10 10 C 1.34769 * 120.00061 * 324.34193 * 9 8 7 11 11 O 1.21358 * 120.00228 * 4.79170 * 10 9 8 12 12 C 1.49367 * 120.00008 * 184.78251 * 10 9 8 13 13 O 1.21362 * 119.99913 * 0.32385 * 12 10 9 14 14 N 1.34775 * 120.00171 * 180.32031 * 12 10 9 15 15 C 1.46499 * 120.00395 * 174.63522 * 14 12 10 16 16 C 1.52996 * 109.47577 * 94.82149 * 15 14 12 17 17 C 1.46504 * 120.00020 * 354.62916 * 14 12 10 18 18 C 1.50694 * 109.46954 * 83.65867 * 17 14 12 19 19 H 1.08006 * 120.00125 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00010 * 180.02562 * 18 17 14 21 21 N 1.31523 * 120.00064 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00042 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47084 * 90.00008 * 22 20 18 24 24 H 1.48496 * 109.47203 * 209.99966 * 22 20 18 25 25 H 1.48497 * 109.46776 * 329.99887 * 22 20 18 26 26 C 1.39267 * 120.18959 * 359.71640 * 8 7 6 27 27 C 1.36605 * 120.09700 * 0.02562 * 26 8 7 28 28 H 1.09006 * 109.47097 * 299.99592 * 1 2 3 29 29 H 1.08992 * 109.47424 * 59.99811 * 1 2 3 30 30 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47381 * 119.99699 * 2 1 3 32 32 H 1.08993 * 109.46831 * 240.00444 * 2 1 3 33 33 H 1.08001 * 120.05532 * 359.96791 * 6 5 3 34 34 H 1.08003 * 119.94788 * 180.24877 * 7 6 5 35 35 H 0.97003 * 119.99676 * 144.34550 * 9 8 7 36 36 H 1.09003 * 109.47089 * 214.82778 * 15 14 12 37 37 H 1.09008 * 109.46676 * 334.82165 * 15 14 12 38 38 H 1.08999 * 109.47286 * 60.00093 * 16 15 14 39 39 H 1.08996 * 109.47398 * 180.02562 * 16 15 14 40 40 H 1.09007 * 109.46835 * 299.99978 * 16 15 14 41 41 H 1.09000 * 109.47411 * 203.66059 * 17 14 12 42 42 H 1.09002 * 109.46925 * 323.65913 * 17 14 12 43 43 H 0.97002 * 119.99502 * 179.97438 * 21 20 18 44 44 H 1.08003 * 119.95159 * 179.97438 * 26 8 7 45 45 H 1.07996 * 120.04394 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 6 3.4762 1.6893 0.0006 6 6 4.3881 0.6263 0.0068 7 6 5.7303 0.8805 0.0015 8 6 6.1923 2.1941 0.0014 9 7 7.5604 2.4484 0.0024 10 6 8.3957 1.6394 0.6836 11 8 7.9670 0.6408 1.2239 12 6 9.8492 1.9717 0.7735 13 8 10.2769 2.9733 0.2381 14 7 10.6856 1.1593 1.4493 15 6 12.1272 1.4200 1.4395 16 6 12.5057 2.2398 2.6747 17 6 10.1533 0.0153 2.1939 18 6 9.9643 -1.1498 1.2570 19 1 10.2159 -1.0485 0.2116 20 6 9.4701 -2.3451 1.7344 21 7 9.3056 -3.3622 0.9168 22 14 9.0342 -2.5202 3.5424 23 1 7.6146 -2.1364 3.7487 24 1 9.2322 -3.9299 3.9651 25 1 9.9092 -1.6335 4.3506 26 6 5.2890 3.2541 0.0010 27 6 3.9451 3.0089 0.0010 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 4.0307 -0.3929 0.0118 34 1 6.4342 0.0613 0.0022 35 1 7.9128 3.2080 -0.4872 36 1 12.6678 0.4736 1.4519 37 1 12.3896 1.9766 0.5397 38 1 12.2433 1.6834 3.5745 39 1 13.5781 2.4342 2.6671 40 1 11.9651 3.1863 2.6621 41 1 10.8528 -0.2623 2.9825 42 1 9.1945 0.2846 2.6370 43 1 8.9583 -4.2032 1.2529 44 1 5.6515 4.2715 0.0014 45 1 3.2455 3.8316 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000627505577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:37 Heat of formation + Delta-G solvation = -64.408966 kcal Electronic energy + Delta-G solvation = -28383.597782 eV Core-core repulsion = 24367.088455 eV Total energy + Delta-G solvation = -4016.509327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86871 -39.94769 -38.85031 -37.56949 -35.94562 -34.46379 -33.07916 -32.66279 -31.10969 -30.77212 -30.08840 -27.80645 -25.97972 -24.61476 -23.01958 -22.84728 -22.59592 -21.29422 -19.68852 -19.35013 -17.81218 -17.18448 -17.05450 -16.82766 -16.06800 -15.77115 -15.55033 -15.27203 -14.99636 -14.50618 -14.34413 -14.04251 -13.89765 -13.69169 -13.43605 -13.30365 -13.23976 -12.79096 -12.59268 -12.49061 -12.37849 -12.19153 -12.00417 -11.90876 -11.82701 -11.32443 -11.22786 -11.10201 -10.81044 -10.74150 -10.51140 -10.28847 -10.19412 -9.75480 -9.60177 -9.12766 -8.82249 -8.58176 -8.18050 -7.99804 -6.13788 -4.11490 0.55830 1.44062 1.85851 2.38668 2.70601 3.25687 3.30587 3.33864 3.61405 3.86682 3.88820 3.95764 4.35730 4.68981 4.78143 4.87913 4.93590 4.96041 5.09893 5.20033 5.27425 5.37269 5.41053 5.51733 5.53050 5.59376 5.64887 5.66731 5.75689 5.99006 6.00390 6.02436 6.12159 6.22004 6.31197 6.36742 6.37674 6.39723 6.45351 6.79569 6.96753 7.04666 7.31161 7.48549 7.49104 7.78101 8.08171 8.36463 8.49201 8.85922 9.46446 10.99262 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.003578 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.432439 B = 7824.490310 C = 9655.471924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.173 4.173 3 C 0.401 3.599 4 O -0.465 6.465 5 C -0.202 4.202 6 C -0.048 4.048 7 C -0.136 4.136 8 C 0.193 3.807 9 N -0.661 5.661 10 C 0.492 3.508 11 O -0.432 6.432 12 C 0.511 3.489 13 O -0.554 6.554 14 N -0.553 5.553 15 C 0.110 3.890 16 C -0.165 4.165 17 C 0.198 3.802 18 C -0.516 4.516 19 H 0.072 0.928 20 C 0.082 3.918 21 N -0.896 5.896 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.287 1.287 25 H -0.268 1.268 26 C -0.164 4.164 27 C -0.041 4.041 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.156 0.844 35 H 0.419 0.581 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.031 0.969 42 H 0.056 0.944 43 H 0.264 0.736 44 H 0.131 0.869 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 9.461 -0.584 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.211 4.211 3 C 0.280 3.720 4 O -0.341 6.341 5 C -0.204 4.204 6 C -0.067 4.067 7 C -0.156 4.156 8 C 0.096 3.904 9 N -0.308 5.308 10 C 0.274 3.726 11 O -0.299 6.299 12 C 0.293 3.707 13 O -0.435 6.435 14 N -0.283 5.283 15 C -0.012 4.012 16 C -0.223 4.223 17 C 0.078 3.922 18 C -0.554 4.554 19 H 0.090 0.910 20 C -0.121 4.121 21 N -0.535 5.535 22 Si 0.700 3.300 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.192 1.192 26 C -0.184 4.184 27 C -0.060 4.060 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.257 0.743 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.149 0.851 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.157 9.468 -0.393 12.504 hybrid contribution 0.096 -0.086 0.676 0.688 sum -8.061 9.382 0.283 12.373 Atomic orbital electron populations 1.21583 0.93812 1.01709 1.02886 1.22011 0.98164 0.95980 1.04927 1.22397 0.87873 0.91083 0.70604 1.90493 1.58512 1.47824 1.37308 1.20438 0.94760 0.94414 1.10801 1.21129 0.92408 0.98737 0.94376 1.21304 0.96573 0.96563 1.01177 1.18080 0.82817 0.93952 0.95513 1.43189 1.04503 1.31986 1.51165 1.20438 0.88048 0.83716 0.80371 1.90927 1.76493 1.21946 1.40572 1.19654 0.86768 0.83787 0.80492 1.90672 1.77904 1.26594 1.48314 1.47952 1.06370 1.27386 1.46617 1.21488 0.80120 1.00734 0.98906 1.22119 1.01178 1.00435 0.98571 1.20321 0.95419 0.83944 0.92555 1.21073 1.43615 0.94301 0.96455 0.90963 1.24713 0.94523 0.95505 0.97368 1.69891 1.45616 1.02968 1.34980 0.86907 0.79807 0.77336 0.85932 1.19780 1.21291 1.19246 1.20658 0.92774 0.98346 1.06664 1.20858 0.94843 0.96108 0.94173 0.92243 0.92239 0.92093 0.88163 0.88184 0.84747 0.82680 0.74312 0.89612 0.90162 0.92393 0.91757 0.92592 0.95061 0.92673 0.92597 0.85075 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.20 37.16 0.34 -0.93 16 2 C -0.17 -1.59 5.02 -27.88 -0.14 -1.73 16 3 C 0.40 4.86 7.11 -30.82 -0.22 4.64 16 4 O -0.46 -6.74 15.96 5.55 0.09 -6.65 16 5 C -0.20 -2.56 5.87 -105.05 -0.62 -3.18 16 6 C -0.05 -0.62 9.42 -39.48 -0.37 -0.99 16 7 C -0.14 -2.12 8.62 -39.79 -0.34 -2.46 16 8 C 0.19 2.80 6.29 -83.78 -0.53 2.27 16 9 N -0.66 -9.95 5.29 -10.28 -0.05 -10.00 16 10 C 0.49 9.23 7.56 -11.63 -0.09 9.14 16 11 O -0.43 -9.32 9.55 5.49 0.05 -9.27 16 12 C 0.51 9.87 7.67 -11.62 -0.09 9.78 16 13 O -0.55 -10.65 16.04 5.49 0.09 -10.57 16 14 N -0.55 -10.89 2.47 -175.60 -0.43 -11.32 16 15 C 0.11 1.80 6.11 -4.04 -0.02 1.77 16 16 C -0.16 -2.24 10.24 37.16 0.38 -1.86 16 17 C 0.20 4.41 3.85 -5.19 -0.02 4.39 16 18 C -0.52 -13.59 8.34 -34.44 -0.29 -13.88 16 19 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 21 N -0.90 -26.10 13.96 55.43 0.77 -25.32 16 22 Si 0.87 20.56 27.47 -169.99 -4.67 15.89 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 26 C -0.16 -1.99 9.90 -39.79 -0.39 -2.38 16 27 C -0.04 -0.50 9.54 -39.49 -0.38 -0.88 16 28 H 0.06 0.57 8.10 -51.93 -0.42 0.14 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.10 0.77 8.09 -51.93 -0.42 0.35 16 33 H 0.13 1.46 7.03 -52.49 -0.37 1.09 16 34 H 0.16 2.87 6.24 -52.48 -0.33 2.54 16 35 H 0.42 5.36 8.30 -40.82 -0.34 5.02 16 36 H 0.09 1.38 8.11 -51.93 -0.42 0.95 16 37 H 0.08 1.28 7.36 -51.92 -0.38 0.90 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.68 7.08 -51.93 -0.37 0.31 16 42 H 0.06 1.27 5.27 -51.93 -0.27 1.00 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.13 1.49 7.64 -52.49 -0.40 1.09 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -31.64 378.09 -7.59 -39.24 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.26 Total: 6.48 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -2.87 Total: 5.83 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.28 Total: -46.65 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: 0.23 Total: -26.49 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.64 -7.59 -39.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627505577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.171 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds