Wall clock time and date at job start Tue Mar 31 2020 16:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46891 * 2 1 4 4 O 1.21293 * 120.00174 * 0.02562 * 3 2 1 5 5 C 1.46858 * 120.00286 * 179.97438 * 3 2 1 6 6 C 1.40061 * 120.08889 * 359.72895 * 5 3 2 7 7 C 1.36615 * 119.89774 * 179.71466 * 6 5 3 8 8 C 1.39250 * 120.09832 * 0.55690 * 7 6 5 9 9 N 1.39155 * 119.90475 * 179.69322 * 8 7 6 10 10 C 1.34769 * 120.00061 * 324.34193 * 9 8 7 11 11 O 1.21358 * 120.00228 * 4.79170 * 10 9 8 12 12 C 1.49367 * 120.00008 * 184.78251 * 10 9 8 13 13 O 1.21362 * 119.99913 * 0.32385 * 12 10 9 14 14 N 1.34775 * 120.00171 * 180.32031 * 12 10 9 15 15 C 1.46499 * 120.00395 * 174.63522 * 14 12 10 16 16 C 1.52996 * 109.47577 * 94.82149 * 15 14 12 17 17 C 1.46504 * 120.00020 * 354.62916 * 14 12 10 18 18 C 1.50694 * 109.46954 * 83.65867 * 17 14 12 19 19 H 1.08006 * 120.00125 * 0.02562 * 18 17 14 20 20 C 1.37876 * 120.00010 * 180.02562 * 18 17 14 21 21 N 1.31523 * 120.00064 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00042 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47084 * 90.00008 * 22 20 18 24 24 H 1.48496 * 109.47203 * 209.99966 * 22 20 18 25 25 H 1.48497 * 109.46776 * 329.99887 * 22 20 18 26 26 C 1.39267 * 120.18959 * 359.71640 * 8 7 6 27 27 C 1.36605 * 120.09700 * 0.02562 * 26 8 7 28 28 H 1.09006 * 109.47097 * 299.99592 * 1 2 3 29 29 H 1.08992 * 109.47424 * 59.99811 * 1 2 3 30 30 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47381 * 119.99699 * 2 1 3 32 32 H 1.08993 * 109.46831 * 240.00444 * 2 1 3 33 33 H 1.08001 * 120.05532 * 359.96791 * 6 5 3 34 34 H 1.08003 * 119.94788 * 180.24877 * 7 6 5 35 35 H 0.97003 * 119.99676 * 144.34550 * 9 8 7 36 36 H 1.09003 * 109.47089 * 214.82778 * 15 14 12 37 37 H 1.09008 * 109.46676 * 334.82165 * 15 14 12 38 38 H 1.08999 * 109.47286 * 60.00093 * 16 15 14 39 39 H 1.08996 * 109.47398 * 180.02562 * 16 15 14 40 40 H 1.09007 * 109.46835 * 299.99978 * 16 15 14 41 41 H 1.09000 * 109.47411 * 203.66059 * 17 14 12 42 42 H 1.09002 * 109.46925 * 323.65913 * 17 14 12 43 43 H 0.97002 * 119.99502 * 179.97438 * 21 20 18 44 44 H 1.08003 * 119.95159 * 179.97438 * 26 8 7 45 45 H 1.07996 * 120.04394 * 179.97438 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 6 3.4762 1.6893 0.0006 6 6 4.3881 0.6263 0.0068 7 6 5.7303 0.8805 0.0015 8 6 6.1923 2.1941 0.0014 9 7 7.5604 2.4484 0.0024 10 6 8.3957 1.6394 0.6836 11 8 7.9670 0.6408 1.2239 12 6 9.8492 1.9717 0.7735 13 8 10.2769 2.9733 0.2381 14 7 10.6856 1.1593 1.4493 15 6 12.1272 1.4200 1.4395 16 6 12.5057 2.2398 2.6747 17 6 10.1533 0.0153 2.1939 18 6 9.9643 -1.1498 1.2570 19 1 10.2159 -1.0485 0.2116 20 6 9.4701 -2.3451 1.7344 21 7 9.3056 -3.3622 0.9168 22 14 9.0342 -2.5202 3.5424 23 1 7.6146 -2.1364 3.7487 24 1 9.2322 -3.9299 3.9651 25 1 9.9092 -1.6335 4.3506 26 6 5.2890 3.2541 0.0010 27 6 3.9451 3.0089 0.0010 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 4.0307 -0.3929 0.0118 34 1 6.4342 0.0613 0.0022 35 1 7.9128 3.2080 -0.4872 36 1 12.6678 0.4736 1.4519 37 1 12.3896 1.9766 0.5397 38 1 12.2433 1.6834 3.5745 39 1 13.5781 2.4342 2.6671 40 1 11.9651 3.1863 2.6621 41 1 10.8528 -0.2623 2.9825 42 1 9.1945 0.2846 2.6370 43 1 8.9583 -4.2032 1.2529 44 1 5.6515 4.2715 0.0014 45 1 3.2455 3.8316 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000627505577.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:35 Heat of formation + Delta-G solvation = -83.776594 kcal Electronic energy + Delta-G solvation = -28384.437625 eV Core-core repulsion = 24367.088455 eV Total energy + Delta-G solvation = -4017.349170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.22776 -41.08967 -40.12087 -38.87012 -37.45907 -35.77747 -34.64310 -33.89709 -32.26194 -32.09327 -31.20927 -29.61955 -27.15611 -25.71285 -24.62143 -24.05485 -23.82898 -22.53303 -20.79265 -20.61541 -19.16207 -19.05052 -18.51417 -18.01223 -17.44643 -17.06451 -16.77150 -16.41471 -16.29669 -16.05577 -15.63386 -15.31150 -15.22412 -14.92646 -14.72634 -14.46316 -14.37397 -14.30040 -14.03201 -13.69716 -13.61338 -13.46049 -13.22571 -13.12094 -12.72157 -12.65489 -12.58607 -12.28500 -12.19383 -12.08133 -12.03381 -11.87951 -11.65485 -11.44814 -10.76540 -10.71607 -10.34874 -10.08236 -9.67204 -9.29238 -8.23597 -6.24976 -0.52969 0.38584 0.41310 1.23703 1.38328 1.42681 1.45227 1.48665 2.16572 2.38631 2.48523 2.77677 3.04867 3.13921 3.30053 3.76140 3.89083 4.04713 4.13138 4.23525 4.24934 4.26839 4.32314 4.40579 4.47993 4.49011 4.67718 4.77672 4.88271 4.90767 4.96150 5.00633 5.01953 5.05485 5.13200 5.19150 5.28171 5.30018 5.34143 5.36851 5.46328 5.51951 5.84657 6.00705 6.09837 6.37098 6.53025 6.70321 6.71146 6.97695 7.36561 8.93163 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.003578 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.432439 B = 7824.490310 C = 9655.471924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.173 4.173 3 C 0.403 3.597 4 O -0.490 6.490 5 C -0.202 4.202 6 C -0.044 4.044 7 C -0.156 4.156 8 C 0.173 3.827 9 N -0.644 5.644 10 C 0.491 3.509 11 O -0.469 6.469 12 C 0.507 3.493 13 O -0.553 6.553 14 N -0.561 5.561 15 C 0.102 3.898 16 C -0.154 4.154 17 C 0.210 3.790 18 C -0.507 4.507 19 H 0.027 0.973 20 C 0.027 3.973 21 N -0.945 5.945 22 Si 0.934 3.066 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.241 1.241 26 C -0.147 4.147 27 C -0.043 4.043 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.154 0.846 34 H 0.120 0.880 35 H 0.430 0.570 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.265 0.735 44 H 0.161 0.839 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 10.863 0.729 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.210 4.210 3 C 0.284 3.716 4 O -0.369 6.369 5 C -0.204 4.204 6 C -0.062 4.062 7 C -0.177 4.177 8 C 0.078 3.922 9 N -0.292 5.292 10 C 0.273 3.727 11 O -0.339 6.339 12 C 0.289 3.711 13 O -0.434 6.434 14 N -0.291 5.291 15 C -0.019 4.019 16 C -0.212 4.212 17 C 0.089 3.911 18 C -0.546 4.546 19 H 0.045 0.955 20 C -0.171 4.171 21 N -0.586 5.586 22 Si 0.758 3.242 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.164 1.164 26 C -0.167 4.167 27 C -0.062 4.062 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.171 0.829 34 H 0.138 0.862 35 H 0.270 0.730 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.179 0.821 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.659 10.928 0.899 13.972 hybrid contribution 0.216 -0.446 0.114 0.508 sum -8.443 10.483 1.013 13.498 Atomic orbital electron populations 1.21589 0.93531 1.02729 1.02071 1.22090 0.98403 0.94105 1.06397 1.22736 0.87249 0.92153 0.69432 1.90490 1.58870 1.48870 1.38635 1.20645 0.95228 0.94539 1.09940 1.21244 0.91372 0.99995 0.93624 1.21124 0.97091 0.96232 1.03234 1.18236 0.82617 0.94339 0.97029 1.43002 1.04640 1.31409 1.50173 1.20462 0.88156 0.83681 0.80414 1.90912 1.76940 1.23460 1.42576 1.19818 0.87148 0.83791 0.80295 1.90658 1.78080 1.26503 1.48179 1.48009 1.07815 1.26702 1.46598 1.21742 0.78247 1.01361 1.00584 1.22045 1.02993 0.99407 0.96794 1.20011 0.95858 0.83273 0.91967 1.21179 1.42483 0.95878 0.95037 0.95455 1.25515 0.94578 0.95144 1.01894 1.70038 1.47558 1.03721 1.37282 0.85923 0.79686 0.77767 0.80812 1.20031 1.21064 1.16394 1.20871 0.92198 0.98947 1.04730 1.21133 0.95153 0.96485 0.93433 0.93185 0.92961 0.90153 0.86772 0.86374 0.82871 0.86230 0.72998 0.89638 0.90001 0.92404 0.88790 0.93075 0.93606 0.92842 0.92624 0.82131 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.20 71.98 0.66 -1.61 16 2 C -0.17 -2.82 5.02 29.85 0.15 -2.67 16 3 C 0.40 9.12 7.11 27.94 0.20 9.32 16 4 O -0.49 -13.58 15.96 -3.07 -0.05 -13.63 16 5 C -0.20 -4.81 5.87 -20.14 -0.12 -4.93 16 6 C -0.04 -1.11 9.42 22.33 0.21 -0.90 16 7 C -0.16 -4.97 8.62 22.13 0.19 -4.78 16 8 C 0.17 4.95 6.29 38.47 0.24 5.19 16 9 N -0.64 -19.25 5.29 -304.79 -1.61 -20.87 16 10 C 0.49 18.67 7.56 87.24 0.66 19.33 16 11 O -0.47 -20.82 9.55 -3.27 -0.03 -20.85 16 12 C 0.51 19.57 7.67 87.24 0.67 20.24 16 13 O -0.55 -20.86 16.04 -3.28 -0.05 -20.91 16 14 N -0.56 -21.94 2.47 -827.82 -2.05 -23.99 16 15 C 0.10 3.23 6.11 86.38 0.53 3.75 16 16 C -0.15 -3.84 10.24 71.98 0.74 -3.11 16 17 C 0.21 9.31 3.85 85.63 0.33 9.64 16 18 C -0.51 -27.44 8.34 25.60 0.21 -27.23 16 19 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 20 C 0.03 1.48 5.47 84.65 0.46 1.95 16 21 N -0.95 -56.93 13.96 21.45 0.30 -56.63 16 22 Si 0.93 42.31 27.47 68.60 1.88 44.19 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 26 C -0.15 -3.28 9.90 22.14 0.22 -3.06 16 27 C -0.04 -0.98 9.54 22.33 0.21 -0.76 16 28 H 0.05 0.89 8.10 -2.38 -0.02 0.87 16 29 H 0.05 0.90 8.10 -2.39 -0.02 0.89 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 1.59 8.07 -2.39 -0.02 1.58 16 32 H 0.12 1.54 8.09 -2.39 -0.02 1.52 16 33 H 0.15 3.18 7.03 -2.91 -0.02 3.16 16 34 H 0.12 4.72 6.24 -2.91 -0.02 4.70 16 35 H 0.43 10.62 8.30 -92.71 -0.77 9.85 16 36 H 0.09 2.68 8.11 -2.39 -0.02 2.66 16 37 H 0.08 2.54 7.36 -2.38 -0.02 2.52 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.05 1.91 7.08 -2.39 -0.02 1.89 16 42 H 0.05 2.45 5.27 -2.39 -0.01 2.43 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.15 2.95 7.64 -2.91 -0.02 2.93 16 Total: -1.00 -70.49 378.09 4.15 -66.34 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.20 Total: 25.98 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 5.57 Total: 20.36 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -3.36 Total: -101.49 kcal Atomic # 8 Polarization: -55.25 SS G_CDS: -0.13 Total: -55.39 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Total: -70.49 4.15 -66.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627505577.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.436 kcal (2) G-P(sol) polarization free energy of solvation -70.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds