Wall clock time and date at job start Tue Mar 31 2020 16:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47232 * 2 1 4 4 O 1.21290 * 119.99998 * 0.02562 * 3 2 1 5 5 C 1.46860 * 120.00023 * 180.02562 * 3 2 1 6 6 C 1.40057 * 120.09494 * 180.02562 * 5 3 2 7 7 C 1.36600 * 119.90365 * 180.02562 * 6 5 3 8 8 C 1.39265 * 120.09573 * 0.02562 * 7 6 5 9 9 N 1.39153 * 119.90062 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00271 * 33.81706 * 9 8 7 11 11 O 1.21362 * 120.00224 * 5.43939 * 10 9 8 12 12 C 1.49372 * 120.00250 * 185.43962 * 10 9 8 13 13 O 1.21359 * 119.99731 * 6.14033 * 12 10 9 14 14 N 1.34771 * 119.99844 * 186.14127 * 12 10 9 15 15 C 1.46500 * 120.00664 * 5.17006 * 14 12 10 16 16 C 1.46504 * 119.99437 * 185.16908 * 14 12 10 17 17 H 1.08990 * 109.47732 * 359.97438 * 16 14 12 18 18 C 1.53000 * 109.46939 * 239.99685 * 16 14 12 19 19 C 1.50697 * 109.47148 * 120.00339 * 16 14 12 20 20 H 1.08010 * 120.00113 * 5.53074 * 19 16 14 21 21 C 1.37874 * 120.00385 * 185.53479 * 19 16 14 22 22 N 1.31519 * 119.99683 * 5.60018 * 21 19 16 23 23 Si 1.86800 * 120.00160 * 185.59686 * 21 19 16 24 24 H 1.48504 * 109.47034 * 95.00038 * 23 21 19 25 25 H 1.48505 * 109.47197 * 214.99679 * 23 21 19 26 26 H 1.48495 * 109.47399 * 334.99721 * 23 21 19 27 27 C 1.39257 * 120.19019 * 0.26911 * 8 7 6 28 28 C 1.36598 * 120.09629 * 359.44709 * 27 8 7 29 29 H 1.08993 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46595 * 299.99579 * 1 2 3 31 31 H 1.08997 * 109.47160 * 59.99494 * 1 2 3 32 32 H 1.09003 * 109.46882 * 240.00888 * 2 1 3 33 33 H 1.08994 * 109.47883 * 120.00579 * 2 1 3 34 34 H 1.08003 * 120.04932 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.95239 * 179.97438 * 7 6 5 36 36 H 0.97004 * 119.99795 * 213.81043 * 9 8 7 37 37 H 1.09004 * 109.46913 * 275.82499 * 15 14 12 38 38 H 1.09005 * 109.46505 * 35.82083 * 15 14 12 39 39 H 1.08998 * 109.47532 * 155.81921 * 15 14 12 40 40 H 1.09000 * 109.47423 * 294.58803 * 18 16 14 41 41 H 1.09000 * 109.47052 * 54.59045 * 18 16 14 42 42 H 1.09005 * 109.46866 * 174.58823 * 18 16 14 43 43 H 0.96998 * 119.99638 * 180.02562 * 22 21 19 44 44 H 1.07998 * 119.95133 * 179.70737 * 27 8 7 45 45 H 1.08004 * 120.05284 * 180.27925 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 0.0005 5 6 3.4762 1.6892 -0.0006 6 6 3.9453 3.0089 0.0000 7 6 5.2891 3.2540 -0.0011 8 6 6.1923 2.1939 -0.0032 9 7 7.5604 2.4483 -0.0049 10 6 8.0466 3.5242 0.6450 11 8 7.3059 4.2155 1.3130 12 6 9.4972 3.8659 0.5431 13 8 10.2156 3.2433 -0.2113 14 7 10.0080 4.8655 1.2889 15 6 9.1688 5.5418 2.2811 16 6 11.4026 5.2757 1.1073 17 1 11.8636 4.6632 0.3325 18 6 12.1635 5.0920 2.4219 19 6 11.4506 6.7251 0.6975 20 1 10.5424 7.3089 0.6702 21 6 12.6539 7.3059 0.3573 22 7 13.7416 6.5701 0.2834 23 14 12.7393 9.1376 0.0011 24 1 13.1421 9.8631 1.2327 25 1 13.7376 9.3877 -1.0695 26 1 11.4063 9.6182 -0.4430 27 6 5.7303 0.8803 -0.0100 28 6 4.3882 0.6261 -0.0031 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 3.2455 3.8315 0.0012 35 1 5.6517 4.2713 -0.0011 36 1 8.1642 1.8511 -0.4737 37 1 8.5891 6.3254 1.7931 38 1 8.4918 4.8195 2.7372 39 1 9.8011 5.9837 3.0512 40 1 11.7640 5.7751 3.1715 41 1 12.0482 4.0649 2.7680 42 1 13.2206 5.3053 2.2627 43 1 14.5882 6.9788 0.0444 44 1 6.4341 0.0612 -0.0164 45 1 4.0306 -0.3930 -0.0038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000627514261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:49 Heat of formation + Delta-G solvation = -70.788861 kcal Electronic energy + Delta-G solvation = -27617.401372 eV Core-core repulsion = 23600.615392 eV Total energy + Delta-G solvation = -4016.785980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12145 -40.11637 -38.90455 -37.79339 -35.95913 -34.79835 -33.30577 -32.80671 -31.37765 -30.38960 -29.67186 -26.52362 -25.93471 -25.29116 -24.51684 -23.24720 -22.42895 -20.95578 -19.86279 -19.37758 -18.06133 -17.33826 -17.08895 -16.45386 -16.02389 -15.93606 -15.76189 -15.64117 -15.17922 -14.63156 -14.52254 -14.27562 -13.95242 -13.69150 -13.53045 -13.29926 -13.10867 -12.80417 -12.67483 -12.56321 -12.44355 -12.13369 -11.86791 -11.73436 -11.53449 -11.42402 -11.10312 -11.02265 -10.93164 -10.81701 -10.57319 -10.37668 -10.25456 -9.95135 -9.37718 -9.32173 -8.95121 -8.52587 -8.41650 -7.85032 -6.18155 -4.24685 0.30715 1.16185 1.63575 2.21215 2.53398 3.22589 3.30135 3.33202 3.45311 3.65498 3.72365 3.88239 4.32665 4.43049 4.58826 4.65113 4.67762 4.73780 4.87530 5.02145 5.13951 5.15238 5.24362 5.36751 5.46244 5.55613 5.70395 5.81446 5.85350 5.88709 5.98560 6.07661 6.14473 6.22640 6.43259 6.57017 6.61065 6.66216 6.83012 6.94729 7.14918 7.29178 7.29282 7.54370 7.69549 7.83895 7.98946 8.25271 8.49000 8.80471 9.41275 10.89321 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.002161 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.005085 B =12955.658539 C =13424.581983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.171 4.171 3 C 0.397 3.603 4 O -0.458 6.458 5 C -0.200 4.200 6 C -0.036 4.036 7 C -0.138 4.138 8 C 0.191 3.809 9 N -0.654 5.654 10 C 0.508 3.492 11 O -0.492 6.492 12 C 0.494 3.506 13 O -0.533 6.533 14 N -0.550 5.550 15 C 0.084 3.916 16 C 0.253 3.747 17 H 0.073 0.927 18 C -0.141 4.141 19 C -0.531 4.531 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.885 5.885 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.161 4.161 28 C -0.049 4.049 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.425 0.575 37 H 0.056 0.944 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.017 0.983 42 H 0.081 0.919 43 H 0.265 0.735 44 H 0.135 0.865 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.927 -14.449 0.810 23.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.276 3.724 4 O -0.333 6.333 5 C -0.201 4.201 6 C -0.054 4.054 7 C -0.158 4.158 8 C 0.095 3.905 9 N -0.300 5.300 10 C 0.292 3.708 11 O -0.364 6.364 12 C 0.274 3.726 13 O -0.412 6.412 14 N -0.281 5.281 15 C -0.060 4.060 16 C 0.154 3.846 17 H 0.091 0.909 18 C -0.200 4.200 19 C -0.570 4.570 20 H 0.081 0.919 21 C -0.136 4.136 22 N -0.522 5.522 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.182 4.182 28 C -0.068 4.068 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.264 0.736 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.036 0.964 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.153 0.847 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.169 -13.685 0.882 23.569 hybrid contribution 0.595 0.742 -0.388 1.027 sum -18.574 -12.943 0.495 22.644 Atomic orbital electron populations 1.21594 0.93700 1.01754 1.03124 1.21991 0.98326 0.95882 1.04593 1.22401 0.87826 0.91152 0.71020 1.90527 1.58405 1.47788 1.36625 1.20462 0.94885 0.94367 1.10428 1.21045 0.95164 0.96206 0.93030 1.20979 0.92458 0.99784 1.02565 1.18101 0.83133 0.93834 0.95432 1.43296 1.06261 1.28156 1.52297 1.21051 0.90679 0.80316 0.78781 1.90735 1.60128 1.48676 1.36883 1.19536 0.86547 0.83062 0.83426 1.90735 1.59805 1.51590 1.39118 1.48285 1.14869 1.30747 1.34176 1.21924 0.94304 0.97806 0.91920 1.19212 0.73597 0.96357 0.95466 0.90948 1.22038 1.03218 0.96953 0.97787 1.21257 0.94149 0.94610 1.46968 0.91941 1.24901 0.95520 0.98493 0.94687 1.69941 0.99604 1.35390 1.47293 0.86451 0.78022 0.84734 0.78057 1.20503 1.21067 1.19808 1.20667 0.96428 0.94878 1.06187 1.20935 0.92098 0.98658 0.95116 0.92075 0.92119 0.92121 0.88335 0.88327 0.84596 0.83978 0.73630 0.92529 0.90978 0.90964 0.94378 0.96376 0.90008 0.92537 0.84721 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.17 -1.00 5.02 -27.88 -0.14 -1.14 16 3 C 0.40 3.80 7.11 -30.82 -0.22 3.58 16 4 O -0.46 -5.87 15.96 5.55 0.09 -5.78 16 5 C -0.20 -1.96 5.87 -105.04 -0.62 -2.58 16 6 C -0.04 -0.41 9.54 -39.49 -0.38 -0.79 16 7 C -0.14 -1.73 8.58 -39.79 -0.34 -2.08 16 8 C 0.19 2.25 6.27 -83.78 -0.52 1.72 16 9 N -0.65 -8.45 5.29 -10.27 -0.05 -8.51 16 10 C 0.51 8.28 7.42 -11.62 -0.09 8.19 16 11 O -0.49 -8.35 11.08 5.49 0.06 -8.29 16 12 C 0.49 9.83 7.72 -11.62 -0.09 9.74 16 13 O -0.53 -11.75 15.85 5.49 0.09 -11.66 16 14 N -0.55 -11.62 2.75 -175.80 -0.48 -12.10 16 15 C 0.08 1.51 8.37 59.85 0.50 2.01 16 16 C 0.25 6.22 2.49 -69.08 -0.17 6.05 16 17 H 0.07 2.03 6.89 -51.93 -0.36 1.68 16 18 C -0.14 -3.20 8.85 37.16 0.33 -2.87 16 19 C -0.53 -14.01 8.34 -34.44 -0.29 -14.29 16 20 H 0.06 1.64 7.56 -52.48 -0.40 1.24 16 21 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 22 N -0.89 -24.48 12.02 55.43 0.67 -23.81 16 23 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.16 -1.42 9.90 -39.80 -0.39 -1.82 16 28 C -0.05 -0.38 9.42 -39.49 -0.37 -0.75 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.10 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.14 1.53 7.64 -52.48 -0.40 1.13 16 35 H 0.14 1.98 6.43 -52.49 -0.34 1.65 16 36 H 0.43 4.80 8.32 -40.82 -0.34 4.46 16 37 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.07 1.19 5.99 -51.93 -0.31 0.88 16 39 H 0.07 1.27 6.55 -51.93 -0.34 0.93 16 40 H 0.04 0.80 6.88 -51.93 -0.36 0.44 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 2.01 6.88 -51.93 -0.36 1.65 16 43 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.14 0.59 7.03 -52.48 -0.37 0.22 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -31.28 376.47 -7.60 -38.87 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.07 Total: 3.84 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.54 Total: 6.09 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.13 Total: -44.42 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: 0.24 Total: -25.73 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.28 -7.60 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627514261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.915 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds