Wall clock time and date at job start Tue Mar 31 2020 16:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.47232 * 2 1 4 4 O 1.21290 * 119.99998 * 0.02562 * 3 2 1 5 5 C 1.46860 * 120.00023 * 180.02562 * 3 2 1 6 6 C 1.40057 * 120.09494 * 180.02562 * 5 3 2 7 7 C 1.36600 * 119.90365 * 180.02562 * 6 5 3 8 8 C 1.39265 * 120.09573 * 0.02562 * 7 6 5 9 9 N 1.39153 * 119.90062 * 179.97438 * 8 7 6 10 10 C 1.34770 * 120.00271 * 33.81706 * 9 8 7 11 11 O 1.21362 * 120.00224 * 5.43939 * 10 9 8 12 12 C 1.49372 * 120.00250 * 185.43962 * 10 9 8 13 13 O 1.21359 * 119.99731 * 6.14033 * 12 10 9 14 14 N 1.34771 * 119.99844 * 186.14127 * 12 10 9 15 15 C 1.46500 * 120.00664 * 5.17006 * 14 12 10 16 16 C 1.46504 * 119.99437 * 185.16908 * 14 12 10 17 17 H 1.08990 * 109.47732 * 359.97438 * 16 14 12 18 18 C 1.53000 * 109.46939 * 239.99685 * 16 14 12 19 19 C 1.50697 * 109.47148 * 120.00339 * 16 14 12 20 20 H 1.08010 * 120.00113 * 5.53074 * 19 16 14 21 21 C 1.37874 * 120.00385 * 185.53479 * 19 16 14 22 22 N 1.31519 * 119.99683 * 5.60018 * 21 19 16 23 23 Si 1.86800 * 120.00160 * 185.59686 * 21 19 16 24 24 H 1.48504 * 109.47034 * 95.00038 * 23 21 19 25 25 H 1.48505 * 109.47197 * 214.99679 * 23 21 19 26 26 H 1.48495 * 109.47399 * 334.99721 * 23 21 19 27 27 C 1.39257 * 120.19019 * 0.26911 * 8 7 6 28 28 C 1.36598 * 120.09629 * 359.44709 * 27 8 7 29 29 H 1.08993 * 109.47253 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46595 * 299.99579 * 1 2 3 31 31 H 1.08997 * 109.47160 * 59.99494 * 1 2 3 32 32 H 1.09003 * 109.46882 * 240.00888 * 2 1 3 33 33 H 1.08994 * 109.47883 * 120.00579 * 2 1 3 34 34 H 1.08003 * 120.04932 * 0.02562 * 6 5 3 35 35 H 1.07997 * 119.95239 * 179.97438 * 7 6 5 36 36 H 0.97004 * 119.99795 * 213.81043 * 9 8 7 37 37 H 1.09004 * 109.46913 * 275.82499 * 15 14 12 38 38 H 1.09005 * 109.46505 * 35.82083 * 15 14 12 39 39 H 1.08998 * 109.47532 * 155.81921 * 15 14 12 40 40 H 1.09000 * 109.47423 * 294.58803 * 18 16 14 41 41 H 1.09000 * 109.47052 * 54.59045 * 18 16 14 42 42 H 1.09005 * 109.46866 * 174.58823 * 18 16 14 43 43 H 0.96998 * 119.99638 * 180.02562 * 22 21 19 44 44 H 1.07998 * 119.95133 * 179.70737 * 27 8 7 45 45 H 1.08004 * 120.05284 * 180.27925 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 0.0005 5 6 3.4762 1.6892 -0.0006 6 6 3.9453 3.0089 0.0000 7 6 5.2891 3.2540 -0.0011 8 6 6.1923 2.1939 -0.0032 9 7 7.5604 2.4483 -0.0049 10 6 8.0466 3.5242 0.6450 11 8 7.3059 4.2155 1.3130 12 6 9.4972 3.8659 0.5431 13 8 10.2156 3.2433 -0.2113 14 7 10.0080 4.8655 1.2889 15 6 9.1688 5.5418 2.2811 16 6 11.4026 5.2757 1.1073 17 1 11.8636 4.6632 0.3325 18 6 12.1635 5.0920 2.4219 19 6 11.4506 6.7251 0.6975 20 1 10.5424 7.3089 0.6702 21 6 12.6539 7.3059 0.3573 22 7 13.7416 6.5701 0.2834 23 14 12.7393 9.1376 0.0011 24 1 13.1421 9.8631 1.2327 25 1 13.7376 9.3877 -1.0695 26 1 11.4063 9.6182 -0.4430 27 6 5.7303 0.8803 -0.0100 28 6 4.3882 0.6261 -0.0031 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 3.2455 3.8315 0.0012 35 1 5.6517 4.2713 -0.0011 36 1 8.1642 1.8511 -0.4737 37 1 8.5891 6.3254 1.7931 38 1 8.4918 4.8195 2.7372 39 1 9.8011 5.9837 3.0512 40 1 11.7640 5.7751 3.1715 41 1 12.0482 4.0649 2.7680 42 1 13.2206 5.3053 2.2627 43 1 14.5882 6.9788 0.0444 44 1 6.4341 0.0612 -0.0164 45 1 4.0306 -0.3930 -0.0038 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000627514261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:48 Heat of formation + Delta-G solvation = -90.024774 kcal Electronic energy + Delta-G solvation = -27618.235504 eV Core-core repulsion = 23600.615392 eV Total energy + Delta-G solvation = -4017.620112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.31730 -41.07413 -40.12752 -38.95292 -37.56589 -36.02972 -34.70681 -33.87608 -32.15264 -31.61446 -31.18913 -27.96869 -27.33557 -26.98400 -25.53827 -24.26685 -23.25287 -22.37790 -20.89189 -20.55839 -19.20277 -18.76546 -18.26384 -18.04170 -17.49491 -17.19245 -16.85638 -16.54448 -16.37627 -16.09697 -15.66841 -15.25904 -15.03218 -14.94453 -14.52827 -14.44729 -14.30325 -14.08586 -13.91933 -13.71630 -13.61062 -13.25958 -13.06962 -12.95989 -12.87868 -12.68860 -12.63153 -12.43323 -12.30203 -12.22122 -12.11069 -11.97168 -11.56604 -11.26253 -10.72730 -10.58577 -10.43634 -10.11149 -9.60875 -9.31192 -8.21275 -6.35163 -0.56320 0.32865 0.38720 1.19778 1.40648 1.42192 1.43763 1.52369 2.06661 2.36672 2.54392 2.78101 3.06859 3.08762 3.21909 3.73957 3.87425 4.08530 4.24614 4.25981 4.33756 4.35469 4.40919 4.46892 4.66231 4.69865 4.81721 4.82898 4.92834 4.94442 4.98073 5.05227 5.08718 5.10969 5.14217 5.24528 5.34691 5.36745 5.37154 5.41271 5.59608 5.75737 5.83486 5.93866 6.03944 6.42562 6.59350 6.60961 6.71160 6.93557 7.35045 8.85627 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.002161 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.005085 B =12955.658539 C =13424.581983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 C 0.396 3.604 4 O -0.501 6.501 5 C -0.202 4.202 6 C -0.053 4.053 7 C -0.154 4.154 8 C 0.168 3.832 9 N -0.636 5.636 10 C 0.518 3.482 11 O -0.502 6.502 12 C 0.488 3.512 13 O -0.561 6.561 14 N -0.562 5.562 15 C 0.089 3.911 16 C 0.257 3.743 17 H 0.030 0.970 18 C -0.128 4.128 19 C -0.544 4.544 20 H 0.059 0.941 21 C 0.021 3.979 22 N -0.913 5.913 23 Si 0.963 3.037 24 H -0.269 1.269 25 H -0.284 1.284 26 H -0.272 1.272 27 C -0.147 4.147 28 C -0.031 4.031 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.433 0.567 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.267 0.733 44 H 0.168 0.832 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 -16.823 1.171 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.201 4.201 3 C 0.277 3.723 4 O -0.380 6.380 5 C -0.204 4.204 6 C -0.072 4.072 7 C -0.174 4.174 8 C 0.073 3.927 9 N -0.283 5.283 10 C 0.300 3.700 11 O -0.376 6.376 12 C 0.270 3.730 13 O -0.441 6.441 14 N -0.292 5.292 15 C -0.053 4.053 16 C 0.156 3.844 17 H 0.048 0.952 18 C -0.186 4.186 19 C -0.582 4.582 20 H 0.077 0.923 21 C -0.180 4.180 22 N -0.551 5.551 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.167 4.167 28 C -0.049 4.049 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.273 0.727 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.185 0.815 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -20.677 -16.093 1.244 26.231 hybrid contribution 0.945 1.377 -0.554 1.759 sum -19.732 -14.716 0.690 24.625 Atomic orbital electron populations 1.21620 0.94431 1.02773 1.01623 1.22086 0.97679 0.93152 1.07203 1.23032 0.87271 0.92642 0.69319 1.90526 1.59227 1.49502 1.38722 1.20737 0.95880 0.94141 1.09600 1.21031 0.94557 0.97337 0.94236 1.20827 0.93226 0.99201 1.04131 1.18302 0.81860 0.95100 0.97473 1.43066 1.07174 1.26824 1.51277 1.20201 0.88646 0.81457 0.79649 1.90735 1.59605 1.49408 1.37853 1.20148 0.88190 0.82258 0.82395 1.90706 1.61100 1.52373 1.39949 1.48242 1.14119 1.31550 1.35268 1.21994 0.94050 0.97990 0.91235 1.18857 0.75666 0.94777 0.95120 0.95247 1.21836 1.01441 0.98233 0.97136 1.21495 0.94112 0.95541 1.47087 0.92322 1.25676 0.95209 1.02552 0.94533 1.70055 1.00059 1.37034 1.47998 0.85474 0.77827 0.79794 0.78120 1.19388 1.20967 1.19685 1.21050 0.97602 0.94069 1.03961 1.21416 0.91001 1.00135 0.92361 0.89691 0.93747 0.93666 0.85350 0.85480 0.85745 0.86381 0.72662 0.92920 0.89246 0.90494 0.93004 0.94822 0.92304 0.92421 0.81457 0.79869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.20 71.98 0.66 -0.86 16 2 C -0.16 -1.25 5.02 29.85 0.15 -1.10 16 3 C 0.40 6.79 7.11 27.95 0.20 6.98 16 4 O -0.50 -12.87 15.96 -3.06 -0.05 -12.92 16 5 C -0.20 -3.52 5.87 -20.14 -0.12 -3.64 16 6 C -0.05 -1.22 9.54 22.33 0.21 -1.01 16 7 C -0.15 -3.91 8.58 22.13 0.19 -3.72 16 8 C 0.17 3.69 6.27 38.47 0.24 3.93 16 9 N -0.64 -15.89 5.29 -304.77 -1.61 -17.50 16 10 C 0.52 16.88 7.42 87.25 0.65 17.53 16 11 O -0.50 -17.13 11.08 -3.28 -0.04 -17.16 16 12 C 0.49 19.78 7.72 87.25 0.67 20.45 16 13 O -0.56 -25.37 15.85 -3.28 -0.05 -25.43 16 14 N -0.56 -24.11 2.75 -828.47 -2.28 -26.39 16 15 C 0.09 3.21 8.37 127.77 1.07 4.28 16 16 C 0.26 12.96 2.49 44.24 0.11 13.07 16 17 H 0.03 1.74 6.89 -2.39 -0.02 1.72 16 18 C -0.13 -5.84 8.85 71.98 0.64 -5.21 16 19 C -0.54 -29.19 8.34 25.60 0.21 -28.98 16 20 H 0.06 3.12 7.56 -2.91 -0.02 3.10 16 21 C 0.02 1.13 5.28 84.65 0.45 1.58 16 22 N -0.91 -51.56 12.02 21.45 0.26 -51.30 16 23 Si 0.96 42.69 29.54 68.60 2.03 44.72 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C -0.15 -2.02 9.90 22.13 0.22 -1.80 16 28 C -0.03 -0.33 9.42 22.33 0.21 -0.12 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 30 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 31 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 32 H 0.13 0.30 8.08 -2.39 -0.02 0.28 16 33 H 0.13 0.33 8.08 -2.39 -0.02 0.31 16 34 H 0.12 3.04 7.64 -2.91 -0.02 3.02 16 35 H 0.12 3.51 6.43 -2.91 -0.02 3.49 16 36 H 0.43 9.26 8.32 -92.70 -0.77 8.49 16 37 H 0.05 1.92 8.09 -2.38 -0.02 1.90 16 38 H 0.09 2.90 5.99 -2.38 -0.01 2.89 16 39 H 0.08 2.65 6.55 -2.39 -0.02 2.64 16 40 H 0.05 2.17 6.88 -2.39 -0.02 2.16 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 2.95 6.88 -2.38 -0.02 2.93 16 43 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16 44 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 45 H 0.18 0.26 7.03 -2.91 -0.02 0.24 16 Total: -1.00 -71.71 376.47 4.28 -67.44 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.26 Total: 17.17 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 5.76 Total: 21.38 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -3.63 Total: -95.19 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -0.14 Total: -55.51 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.71 4.28 -67.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627514261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.587 kcal (2) G-P(sol) polarization free energy of solvation -71.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds