Wall clock time and date at job start Tue Mar 31 2020 16:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46988 * 2 1 4 4 O 1.21301 * 120.00011 * 0.02562 * 3 2 1 5 5 C 1.46861 * 120.00349 * 180.02562 * 3 2 1 6 6 C 1.40054 * 120.09729 * 180.02562 * 5 3 2 7 7 C 1.36606 * 119.90224 * 180.02562 * 6 5 3 8 8 C 1.39257 * 120.09476 * 359.97438 * 7 6 5 9 9 N 1.39155 * 119.90099 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99999 * 35.85019 * 9 8 7 11 11 O 1.21360 * 119.99954 * 355.68821 * 10 9 8 12 12 C 1.49367 * 120.00318 * 175.69368 * 10 9 8 13 13 O 1.21361 * 119.99877 * 6.15975 * 12 10 9 14 14 N 1.34771 * 120.00223 * 186.16320 * 12 10 9 15 15 C 1.46500 * 120.00262 * 5.14678 * 14 12 10 16 16 C 1.46503 * 120.00122 * 185.14735 * 14 12 10 17 17 H 1.09005 * 109.46936 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47175 * 119.99928 * 16 14 12 19 19 C 1.50698 * 109.47154 * 239.99775 * 16 14 12 20 20 H 1.07994 * 119.99997 * 0.02562 * 19 16 14 21 21 C 1.37880 * 120.00021 * 179.97438 * 19 16 14 22 22 N 1.31517 * 119.99610 * 0.02562 * 21 19 16 23 23 Si 1.86793 * 120.00069 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47241 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.47223 * 300.00253 * 23 21 19 26 26 H 1.48503 * 109.47210 * 59.99980 * 23 21 19 27 27 C 1.39261 * 120.19313 * 0.27879 * 8 7 6 28 28 C 1.36599 * 120.09243 * 359.44408 * 27 8 7 29 29 H 1.08994 * 109.47471 * 59.99918 * 1 2 3 30 30 H 1.09001 * 109.46751 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46987 * 299.99600 * 1 2 3 32 32 H 1.08997 * 109.46987 * 240.00400 * 2 1 3 33 33 H 1.08994 * 109.47471 * 120.00082 * 2 1 3 34 34 H 1.07998 * 120.04536 * 359.97438 * 6 5 3 35 35 H 1.07997 * 119.95153 * 179.97438 * 7 6 5 36 36 H 0.97002 * 119.99786 * 215.84028 * 9 8 7 37 37 H 1.09007 * 109.46973 * 275.83970 * 15 14 12 38 38 H 1.09004 * 109.46761 * 35.83304 * 15 14 12 39 39 H 1.08996 * 109.47213 * 155.83398 * 15 14 12 40 40 H 1.08999 * 109.47252 * 59.99970 * 18 16 14 41 41 H 1.08997 * 109.47420 * 180.02562 * 18 16 14 42 42 H 1.09004 * 109.47366 * 300.00351 * 18 16 14 43 43 H 0.97004 * 119.99534 * 179.97438 * 22 21 19 44 44 H 1.08001 * 119.94893 * 179.70324 * 27 8 7 45 45 H 1.08002 * 120.04694 * 180.27439 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3428 0.0005 5 6 3.4762 1.6893 -0.0006 6 6 3.9451 3.0090 0.0000 7 6 5.2890 3.2542 -0.0011 8 6 6.1922 2.1942 -0.0022 9 7 7.5603 2.4485 -0.0038 10 6 8.0507 3.5018 0.6792 11 8 7.2933 4.2732 1.2307 12 6 9.5263 3.7199 0.7573 13 8 10.2784 3.0162 0.1155 14 7 10.0225 4.6979 1.5406 15 6 9.1255 5.4731 2.4013 16 6 11.4589 4.9860 1.5314 17 1 11.9599 4.3132 0.8354 18 6 11.6858 6.4341 1.0929 19 6 12.0200 4.7866 2.9157 20 1 11.3717 4.4759 3.7216 21 6 13.3614 4.9997 3.1531 22 7 14.1510 5.3776 2.1716 23 14 14.0572 4.7519 4.8689 24 1 15.5131 5.0440 4.8596 25 1 13.3748 5.6689 5.8170 26 1 13.8365 3.3463 5.2942 27 6 5.7302 0.8804 -0.0080 28 6 4.3881 0.6263 -0.0013 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2453 3.8316 0.0004 35 1 5.6515 4.2715 -0.0011 36 1 8.1610 1.8677 -0.4964 37 1 8.6813 6.2852 1.8254 38 1 8.3368 4.8242 2.7822 39 1 9.6908 5.8867 3.2364 40 1 11.1847 7.1072 1.7885 41 1 12.7545 6.6483 1.0856 42 1 11.2799 6.5784 0.0916 43 1 15.0946 5.5279 2.3387 44 1 6.4342 0.0614 -0.0137 45 1 4.0307 -0.3928 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000627514262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:53 Heat of formation + Delta-G solvation = -69.438679 kcal Electronic energy + Delta-G solvation = -27612.233257 eV Core-core repulsion = 23595.505825 eV Total energy + Delta-G solvation = -4016.727432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.12503 -40.12076 -38.90566 -37.79407 -35.95963 -34.80313 -33.30967 -32.84405 -31.37535 -30.39560 -29.57835 -26.51660 -25.90902 -25.32808 -24.48980 -23.25640 -22.41590 -20.94751 -19.87773 -19.36654 -18.05055 -17.30415 -17.12087 -16.49736 -16.07231 -15.95718 -15.76680 -15.59313 -15.18025 -14.60090 -14.53717 -14.32749 -13.94967 -13.68469 -13.55351 -13.26551 -13.10159 -12.79409 -12.59078 -12.55486 -12.44791 -12.14305 -11.83874 -11.70203 -11.53708 -11.42184 -11.14899 -10.94710 -10.92039 -10.84199 -10.50429 -10.36101 -10.25427 -9.95926 -9.37743 -9.31062 -8.94820 -8.52493 -8.45031 -7.84247 -6.17149 -4.25813 0.30202 1.15929 1.63558 2.18992 2.53756 3.23717 3.28765 3.30752 3.45599 3.63311 3.71908 3.88809 4.31783 4.43530 4.59303 4.65235 4.67899 4.73604 4.87433 5.02346 5.13901 5.14634 5.24626 5.36698 5.46129 5.55389 5.70788 5.81396 5.85746 5.93580 6.00313 6.09324 6.14533 6.20264 6.48029 6.59516 6.66224 6.69294 6.88408 6.96558 7.16337 7.28268 7.30704 7.59105 7.71081 7.88626 8.02235 8.25443 8.49109 8.78337 9.40417 10.88270 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.002109 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.265207 B =13270.876691 C =13343.437213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.171 4.171 3 C 0.398 3.602 4 O -0.458 6.458 5 C -0.198 4.198 6 C -0.038 4.038 7 C -0.137 4.137 8 C 0.187 3.813 9 N -0.654 5.654 10 C 0.508 3.492 11 O -0.494 6.494 12 C 0.493 3.507 13 O -0.534 6.534 14 N -0.550 5.550 15 C 0.081 3.919 16 C 0.255 3.745 17 H 0.067 0.933 18 C -0.147 4.147 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.902 3.098 24 H -0.285 1.285 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.159 4.159 28 C -0.051 4.051 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.146 0.854 36 H 0.425 0.575 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.033 0.967 41 H 0.097 0.903 42 H 0.013 0.987 43 H 0.266 0.734 44 H 0.135 0.865 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.375 -9.822 -5.251 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.276 3.724 4 O -0.334 6.334 5 C -0.200 4.200 6 C -0.057 4.057 7 C -0.157 4.157 8 C 0.091 3.909 9 N -0.300 5.300 10 C 0.292 3.708 11 O -0.366 6.366 12 C 0.274 3.726 13 O -0.413 6.413 14 N -0.280 5.280 15 C -0.062 4.062 16 C 0.156 3.844 17 H 0.085 0.915 18 C -0.205 4.205 19 C -0.568 4.568 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.524 5.524 23 Si 0.730 3.270 24 H -0.211 1.211 25 H -0.201 1.201 26 H -0.202 1.202 27 C -0.179 4.179 28 C -0.070 4.070 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.264 0.736 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.153 0.847 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.610 -9.022 -5.176 23.086 hybrid contribution 0.872 -0.432 0.753 1.230 sum -19.738 -9.454 -4.422 22.328 Atomic orbital electron populations 1.21594 0.93692 1.01766 1.03113 1.21992 0.98332 0.95871 1.04616 1.22409 0.87829 0.91161 0.70995 1.90528 1.58407 1.47792 1.36633 1.20476 0.94880 0.94404 1.10230 1.21068 0.95244 0.96166 0.93203 1.21099 0.92360 1.00021 1.02234 1.18118 0.83110 0.93802 0.95855 1.43263 1.06307 1.30394 1.50059 1.21053 0.91010 0.80628 0.78083 1.90715 1.60078 1.43077 1.42779 1.19548 0.86834 0.83273 0.82991 1.90733 1.58923 1.45996 1.45620 1.48289 1.11340 1.31031 1.37364 1.21957 0.93318 0.96060 0.94879 1.19195 0.72479 0.94269 0.98493 0.91532 1.22105 1.04581 0.97528 0.96331 1.21216 0.94000 1.47407 0.94210 0.92031 1.24889 0.96658 0.94627 0.97494 1.69862 1.05441 1.45726 1.31354 0.86489 0.77895 0.78783 0.83859 1.21093 1.20114 1.20173 1.20712 0.96434 0.94999 1.05779 1.20939 0.92101 0.98680 0.95235 0.92138 0.92066 0.92108 0.88329 0.88303 0.84622 0.83595 0.73598 0.93056 0.90850 0.90214 0.94738 0.88430 0.96820 0.92452 0.84678 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.20 37.16 0.34 -0.58 16 2 C -0.17 -1.01 5.02 -27.88 -0.14 -1.15 16 3 C 0.40 3.78 7.11 -30.82 -0.22 3.56 16 4 O -0.46 -5.82 15.96 5.54 0.09 -5.73 16 5 C -0.20 -1.94 5.87 -105.05 -0.62 -2.56 16 6 C -0.04 -0.43 9.55 -39.49 -0.38 -0.80 16 7 C -0.14 -1.68 8.61 -39.79 -0.34 -2.03 16 8 C 0.19 2.19 6.28 -83.78 -0.53 1.67 16 9 N -0.65 -8.44 5.29 -10.27 -0.05 -8.50 16 10 C 0.51 8.25 7.53 -11.63 -0.09 8.16 16 11 O -0.49 -8.29 10.84 5.49 0.06 -8.23 16 12 C 0.49 9.81 7.72 -11.63 -0.09 9.72 16 13 O -0.53 -11.74 15.83 5.49 0.09 -11.65 16 14 N -0.55 -11.65 2.75 -175.80 -0.48 -12.14 16 15 C 0.08 1.47 8.16 59.85 0.49 1.96 16 16 C 0.25 6.29 2.62 -69.08 -0.18 6.10 16 17 H 0.07 1.86 6.91 -51.93 -0.36 1.50 16 18 C -0.15 -3.41 8.97 37.16 0.33 -3.07 16 19 C -0.53 -13.89 7.95 -34.44 -0.27 -14.16 16 20 H 0.06 1.59 7.43 -52.49 -0.39 1.20 16 21 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 23 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.16 -1.43 9.90 -39.79 -0.39 -1.83 16 28 C -0.05 -0.40 9.42 -39.49 -0.37 -0.77 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.02 16 32 H 0.10 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.10 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.14 1.49 7.64 -52.49 -0.40 1.09 16 35 H 0.15 1.96 6.27 -52.49 -0.33 1.63 16 36 H 0.43 4.84 8.30 -40.82 -0.34 4.50 16 37 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 39 H 0.08 1.49 7.11 -51.93 -0.37 1.12 16 40 H 0.03 0.74 7.67 -51.93 -0.40 0.35 16 41 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.14 0.61 7.03 -52.49 -0.37 0.24 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -30.79 375.61 -7.67 -38.46 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.08 Total: 4.31 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -2.55 Total: 5.90 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.09 Total: -44.22 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: 0.23 Total: -25.61 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.79 -7.67 -38.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627514262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.981 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds