Wall clock time and date at job start Tue Mar 31 2020 16:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46988 * 2 1 4 4 O 1.21301 * 120.00011 * 0.02562 * 3 2 1 5 5 C 1.46861 * 120.00349 * 180.02562 * 3 2 1 6 6 C 1.40054 * 120.09729 * 180.02562 * 5 3 2 7 7 C 1.36606 * 119.90224 * 180.02562 * 6 5 3 8 8 C 1.39257 * 120.09476 * 359.97438 * 7 6 5 9 9 N 1.39155 * 119.90099 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99999 * 35.85019 * 9 8 7 11 11 O 1.21360 * 119.99954 * 355.68821 * 10 9 8 12 12 C 1.49367 * 120.00318 * 175.69368 * 10 9 8 13 13 O 1.21361 * 119.99877 * 6.15975 * 12 10 9 14 14 N 1.34771 * 120.00223 * 186.16320 * 12 10 9 15 15 C 1.46500 * 120.00262 * 5.14678 * 14 12 10 16 16 C 1.46503 * 120.00122 * 185.14735 * 14 12 10 17 17 H 1.09005 * 109.46936 * 0.02562 * 16 14 12 18 18 C 1.52997 * 109.47175 * 119.99928 * 16 14 12 19 19 C 1.50698 * 109.47154 * 239.99775 * 16 14 12 20 20 H 1.07994 * 119.99997 * 0.02562 * 19 16 14 21 21 C 1.37880 * 120.00021 * 179.97438 * 19 16 14 22 22 N 1.31517 * 119.99610 * 0.02562 * 21 19 16 23 23 Si 1.86793 * 120.00069 * 180.02562 * 21 19 16 24 24 H 1.48498 * 109.47241 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.47223 * 300.00253 * 23 21 19 26 26 H 1.48503 * 109.47210 * 59.99980 * 23 21 19 27 27 C 1.39261 * 120.19313 * 0.27879 * 8 7 6 28 28 C 1.36599 * 120.09243 * 359.44408 * 27 8 7 29 29 H 1.08994 * 109.47471 * 59.99918 * 1 2 3 30 30 H 1.09001 * 109.46751 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46987 * 299.99600 * 1 2 3 32 32 H 1.08997 * 109.46987 * 240.00400 * 2 1 3 33 33 H 1.08994 * 109.47471 * 120.00082 * 2 1 3 34 34 H 1.07998 * 120.04536 * 359.97438 * 6 5 3 35 35 H 1.07997 * 119.95153 * 179.97438 * 7 6 5 36 36 H 0.97002 * 119.99786 * 215.84028 * 9 8 7 37 37 H 1.09007 * 109.46973 * 275.83970 * 15 14 12 38 38 H 1.09004 * 109.46761 * 35.83304 * 15 14 12 39 39 H 1.08996 * 109.47213 * 155.83398 * 15 14 12 40 40 H 1.08999 * 109.47252 * 59.99970 * 18 16 14 41 41 H 1.08997 * 109.47420 * 180.02562 * 18 16 14 42 42 H 1.09004 * 109.47366 * 300.00351 * 18 16 14 43 43 H 0.97004 * 119.99534 * 179.97438 * 22 21 19 44 44 H 1.08001 * 119.94893 * 179.70324 * 27 8 7 45 45 H 1.08002 * 120.04694 * 180.27439 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3428 0.0005 5 6 3.4762 1.6893 -0.0006 6 6 3.9451 3.0090 0.0000 7 6 5.2890 3.2542 -0.0011 8 6 6.1922 2.1942 -0.0022 9 7 7.5603 2.4485 -0.0038 10 6 8.0507 3.5018 0.6792 11 8 7.2933 4.2732 1.2307 12 6 9.5263 3.7199 0.7573 13 8 10.2784 3.0162 0.1155 14 7 10.0225 4.6979 1.5406 15 6 9.1255 5.4731 2.4013 16 6 11.4589 4.9860 1.5314 17 1 11.9599 4.3132 0.8354 18 6 11.6858 6.4341 1.0929 19 6 12.0200 4.7866 2.9157 20 1 11.3717 4.4759 3.7216 21 6 13.3614 4.9997 3.1531 22 7 14.1510 5.3776 2.1716 23 14 14.0572 4.7519 4.8689 24 1 15.5131 5.0440 4.8596 25 1 13.3748 5.6689 5.8170 26 1 13.8365 3.3463 5.2942 27 6 5.7302 0.8804 -0.0080 28 6 4.3881 0.6263 -0.0013 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2453 3.8316 0.0004 35 1 5.6515 4.2715 -0.0011 36 1 8.1610 1.8677 -0.4964 37 1 8.6813 6.2852 1.8254 38 1 8.3368 4.8242 2.7822 39 1 9.6908 5.8867 3.2364 40 1 11.1847 7.1072 1.7885 41 1 12.7545 6.6483 1.0856 42 1 11.2799 6.5784 0.0916 43 1 15.0946 5.5279 2.3387 44 1 6.4342 0.0614 -0.0137 45 1 4.0307 -0.3928 -0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000627514262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:52 Heat of formation + Delta-G solvation = -87.994346 kcal Electronic energy + Delta-G solvation = -27613.037891 eV Core-core repulsion = 23595.505825 eV Total energy + Delta-G solvation = -4017.532066 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.31461 -41.07297 -40.12674 -38.94556 -37.57013 -36.03114 -34.72146 -33.87840 -32.14452 -31.54653 -31.17548 -27.95534 -27.35774 -26.97771 -25.51356 -24.26197 -23.24139 -22.37268 -20.88330 -20.56869 -19.20565 -18.68441 -18.33347 -18.07029 -17.50402 -17.16589 -16.86307 -16.52291 -16.38021 -16.11785 -15.65370 -15.22958 -15.12782 -14.83272 -14.53056 -14.43787 -14.28621 -14.04891 -13.92865 -13.66265 -13.56882 -13.26221 -13.07151 -12.99883 -12.77477 -12.73924 -12.64282 -12.42159 -12.25341 -12.21628 -12.11601 -11.97668 -11.52421 -11.25267 -10.73793 -10.57864 -10.40931 -10.10032 -9.60127 -9.33425 -8.17820 -6.34089 -0.55771 0.32368 0.39186 1.19790 1.42023 1.44352 1.45136 1.52906 2.06993 2.37584 2.55080 2.77626 3.06678 3.10841 3.21851 3.74938 3.88381 4.08774 4.24828 4.26071 4.33248 4.36684 4.44699 4.47772 4.67784 4.70009 4.81643 4.85066 4.92721 4.97386 5.00085 5.05042 5.09770 5.10549 5.15741 5.24982 5.34176 5.36839 5.38083 5.41655 5.59980 5.78505 5.85913 5.96670 6.08325 6.42694 6.58701 6.60522 6.71427 6.93825 7.36267 8.86649 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027902 B = 0.002109 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.265207 B =13270.876691 C =13343.437213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 C 0.396 3.604 4 O -0.500 6.500 5 C -0.201 4.201 6 C -0.054 4.054 7 C -0.150 4.150 8 C 0.164 3.836 9 N -0.637 5.637 10 C 0.518 3.482 11 O -0.502 6.502 12 C 0.488 3.512 13 O -0.561 6.561 14 N -0.562 5.562 15 C 0.087 3.913 16 C 0.259 3.741 17 H 0.026 0.974 18 C -0.134 4.134 19 C -0.543 4.543 20 H 0.061 0.939 21 C 0.020 3.980 22 N -0.913 5.913 23 Si 0.965 3.035 24 H -0.282 1.282 25 H -0.266 1.266 26 H -0.276 1.276 27 C -0.148 4.148 28 C -0.033 4.033 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.433 0.567 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.024 0.976 43 H 0.267 0.733 44 H 0.165 0.835 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.836 -12.433 -4.619 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.202 4.202 3 C 0.278 3.722 4 O -0.379 6.379 5 C -0.202 4.202 6 C -0.073 4.073 7 C -0.170 4.170 8 C 0.069 3.931 9 N -0.284 5.284 10 C 0.301 3.699 11 O -0.376 6.376 12 C 0.270 3.730 13 O -0.442 6.442 14 N -0.292 5.292 15 C -0.055 4.055 16 C 0.158 3.842 17 H 0.044 0.956 18 C -0.193 4.193 19 C -0.581 4.581 20 H 0.079 0.921 21 C -0.181 4.181 22 N -0.551 5.551 23 Si 0.790 3.210 24 H -0.208 1.208 25 H -0.191 1.191 26 H -0.201 1.201 27 C -0.167 4.167 28 C -0.052 4.052 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.273 0.727 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.182 0.818 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.111 -11.658 -4.556 25.408 hybrid contribution 1.219 0.308 0.476 1.345 sum -20.892 -11.350 -4.081 24.124 Atomic orbital electron populations 1.21619 0.94382 1.02766 1.01657 1.22085 0.97721 0.93235 1.07146 1.23017 0.87289 0.92603 0.69333 1.90526 1.59202 1.49452 1.38680 1.20745 0.95820 0.94237 1.09421 1.21071 0.94707 0.97235 0.94263 1.20962 0.93018 0.99542 1.03512 1.18315 0.81868 0.95040 0.97890 1.43038 1.07227 1.29127 1.48989 1.20184 0.88878 0.81788 0.79052 1.90719 1.59469 1.43715 1.43725 1.20158 0.88650 0.82272 0.81939 1.90705 1.60290 1.46757 1.46400 1.48237 1.10466 1.32023 1.38449 1.22011 0.92786 0.96285 0.94388 1.18833 0.74432 0.93979 0.96943 0.95649 1.21909 1.03222 0.96923 0.97218 1.21456 0.94430 1.47461 0.94786 0.92118 1.25686 0.96987 0.94327 1.01086 1.69989 1.05632 1.46314 1.33143 0.85501 0.77232 0.78669 0.79579 1.20758 1.19063 1.20104 1.21065 0.97580 0.94245 1.03855 1.21395 0.91008 1.00144 0.92617 0.93580 0.89742 0.93739 0.85365 0.85621 0.85559 0.85570 0.72712 0.91783 0.89818 0.90822 0.93598 0.90664 0.95743 0.92406 0.81796 0.80060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.20 71.98 0.66 -0.86 16 2 C -0.17 -1.28 5.02 29.85 0.15 -1.13 16 3 C 0.40 6.74 7.11 27.94 0.20 6.94 16 4 O -0.50 -12.65 15.96 -3.10 -0.05 -12.70 16 5 C -0.20 -3.47 5.87 -20.14 -0.12 -3.59 16 6 C -0.05 -1.21 9.55 22.33 0.21 -0.99 16 7 C -0.15 -3.69 8.61 22.13 0.19 -3.49 16 8 C 0.16 3.58 6.28 38.47 0.24 3.82 16 9 N -0.64 -15.85 5.29 -304.78 -1.61 -17.47 16 10 C 0.52 16.74 7.53 87.24 0.66 17.39 16 11 O -0.50 -16.81 10.84 -3.28 -0.04 -16.85 16 12 C 0.49 19.69 7.72 87.24 0.67 20.37 16 13 O -0.56 -25.30 15.83 -3.28 -0.05 -25.35 16 14 N -0.56 -24.15 2.75 -828.47 -2.28 -26.43 16 15 C 0.09 3.16 8.16 127.77 1.04 4.21 16 16 C 0.26 13.12 2.62 44.24 0.12 13.23 16 17 H 0.03 1.49 6.91 -2.38 -0.02 1.48 16 18 C -0.13 -6.33 8.97 71.98 0.65 -5.69 16 19 C -0.54 -28.83 7.95 25.60 0.20 -28.63 16 20 H 0.06 3.16 7.43 -2.91 -0.02 3.14 16 21 C 0.02 1.04 5.30 84.65 0.45 1.49 16 22 N -0.91 -50.76 11.32 21.45 0.24 -50.51 16 23 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 C -0.15 -2.11 9.90 22.13 0.22 -1.89 16 28 C -0.03 -0.37 9.42 22.33 0.21 -0.16 16 29 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 32 H 0.13 0.32 8.08 -2.39 -0.02 0.30 16 33 H 0.13 0.39 8.08 -2.39 -0.02 0.37 16 34 H 0.13 2.95 7.64 -2.91 -0.02 2.93 16 35 H 0.13 3.54 6.27 -2.91 -0.02 3.52 16 36 H 0.43 9.36 8.30 -92.71 -0.77 8.59 16 37 H 0.06 2.14 8.09 -2.38 -0.02 2.12 16 38 H 0.08 2.86 5.99 -2.39 -0.01 2.84 16 39 H 0.07 2.73 7.11 -2.39 -0.02 2.71 16 40 H 0.04 2.00 7.67 -2.39 -0.02 1.98 16 41 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 42 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 44 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.18 0.39 7.03 -2.91 -0.02 0.36 16 Total: -1.00 -69.81 375.61 4.25 -65.56 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.26 Total: 18.70 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 5.75 Total: 20.99 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -3.65 Total: -94.41 kcal Atomic # 8 Polarization: -54.76 SS G_CDS: -0.14 Total: -54.90 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -69.81 4.25 -65.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000627514262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.431 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds