Wall clock time and date at job start Tue Mar 31 2020 18:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47259 * 2 1 4 4 C 1.50703 * 109.47231 * 120.00478 * 2 1 3 5 5 H 1.07997 * 119.99792 * 119.99973 * 4 2 1 6 6 C 1.37882 * 119.99674 * 299.99733 * 4 2 1 7 7 N 1.31506 * 119.99829 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00104 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47230 * 89.99726 * 8 6 4 10 10 H 1.48502 * 109.47242 * 210.00039 * 8 6 4 11 11 H 1.48506 * 109.47256 * 330.00089 * 8 6 4 12 12 N 1.46505 * 109.46990 * 240.00436 * 2 1 3 13 13 C 1.34774 * 120.00301 * 85.00403 * 12 2 1 14 14 O 1.21288 * 119.99763 * 0.26789 * 13 12 2 15 15 C 1.50698 * 120.00374 * 180.02562 * 13 12 2 16 16 C 1.52990 * 109.47258 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.47551 * 304.99970 * 16 15 13 18 18 C 1.50703 * 109.47079 * 184.99724 * 16 15 13 19 19 C 1.38228 * 120.00005 * 296.48623 * 18 16 15 20 20 C 1.38241 * 119.99768 * 179.78745 * 19 18 16 21 21 C 1.38232 * 120.00309 * 0.44262 * 20 19 18 22 22 C 1.38243 * 119.99517 * 359.81073 * 21 20 19 23 23 C 1.38230 * 120.00202 * 359.97438 * 22 21 20 24 24 N 1.46504 * 109.47243 * 64.99855 * 16 15 13 25 25 C 1.47093 * 125.55575 * 54.28694 * 24 16 15 26 26 C 1.54091 * 103.77409 * 179.97438 * 25 24 16 27 27 O 1.45700 * 104.00951 * 0.02562 * 26 25 24 28 28 C 1.33773 * 109.47650 * 359.75548 * 27 26 25 29 29 O 1.21504 * 123.07386 * 180.24709 * 28 27 26 30 30 H 1.08998 * 109.46962 * 299.99665 * 1 2 3 31 31 H 1.09002 * 109.46915 * 59.99737 * 1 2 3 32 32 H 1.08997 * 109.47007 * 179.97438 * 1 2 3 33 33 H 0.96996 * 120.00495 * 179.97438 * 7 6 4 34 34 H 0.97000 * 119.99593 * 264.99493 * 12 2 1 35 35 H 1.09006 * 109.46899 * 299.99736 * 15 13 12 36 36 H 1.09004 * 109.46802 * 59.99039 * 15 13 12 37 37 H 1.07998 * 120.00559 * 359.97438 * 19 18 16 38 38 H 1.07999 * 119.99848 * 180.27367 * 20 19 18 39 39 H 1.07999 * 120.00576 * 179.83802 * 21 20 19 40 40 H 1.08001 * 119.99627 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00163 * 180.02562 * 23 22 21 42 42 H 1.08993 * 110.56490 * 298.54771 * 25 24 16 43 43 H 1.09004 * 110.56638 * 61.41237 * 25 24 16 44 44 H 1.09001 * 110.52017 * 118.62831 * 26 25 24 45 45 H 1.09000 * 110.52603 * 241.22986 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1372 -0.8597 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9760 1.9950 3.9069 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6905 -1.1963 13 6 2.1471 -0.0182 -2.3572 14 8 1.8633 1.1599 -2.4104 15 6 2.6488 -0.7286 -3.5878 16 6 2.6999 0.2544 -4.7590 17 1 1.7201 0.7133 -4.8913 18 6 3.0836 -0.4820 -6.0166 19 6 4.3232 -1.0860 -6.1130 20 6 4.6733 -1.7653 -7.2649 21 6 3.7875 -1.8328 -8.3239 22 6 2.5498 -1.2242 -8.2295 23 6 2.1979 -0.5487 -7.0760 24 7 3.6928 1.2950 -4.4803 25 6 5.1015 1.0606 -4.1278 26 6 5.6754 2.4792 -3.9469 27 8 4.5417 3.3549 -4.2130 28 6 3.4670 2.6155 -4.5098 29 8 2.3844 3.0972 -4.7785 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9033 -0.5282 4.4375 34 1 2.2490 -1.6317 -1.1527 35 1 3.6480 -1.1212 -3.3987 36 1 1.9759 -1.5504 -3.8326 37 1 5.0169 -1.0299 -5.2872 38 1 5.6401 -2.2410 -7.3385 39 1 4.0621 -2.3612 -9.2249 40 1 1.8575 -1.2772 -9.0568 41 1 1.2308 -0.0737 -7.0020 42 1 5.1748 0.4965 -3.1980 43 1 5.6166 0.5394 -4.9347 44 1 6.0345 2.6190 -2.9272 45 1 6.4778 2.6609 -4.6618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728274416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:48 Heat of formation + Delta-G solvation = -66.654427 kcal Electronic energy + Delta-G solvation = -29270.599853 eV Core-core repulsion = 25253.993155 eV Total energy + Delta-G solvation = -4016.606697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58267 -39.72030 -38.93093 -36.92441 -36.09833 -34.88749 -32.69558 -32.36021 -31.21240 -30.52991 -29.76229 -28.85682 -25.35387 -25.06174 -23.79650 -22.73663 -22.04105 -21.40219 -20.20861 -19.55128 -17.80147 -17.30230 -17.16733 -16.89408 -16.70721 -15.97477 -15.61765 -15.27358 -15.09705 -14.76837 -14.57723 -14.23800 -14.07855 -13.96248 -13.66742 -13.57826 -13.15631 -12.88905 -12.80479 -12.71996 -12.35195 -12.23966 -12.18520 -11.85387 -11.62450 -11.40641 -11.21302 -11.12184 -10.81677 -10.58755 -10.38152 -10.19564 -9.71203 -9.27830 -9.24189 -9.19087 -8.99671 -8.85426 -8.76703 -8.15807 -6.23254 -4.25822 0.99283 1.12732 2.51078 3.01270 3.21290 3.24253 3.35563 3.41549 3.45739 3.59711 3.81991 4.09475 4.30845 4.42654 4.43736 4.62940 4.70502 4.75681 4.85881 4.90607 5.07367 5.10567 5.12555 5.21388 5.27409 5.36382 5.38972 5.46410 5.58910 5.68832 5.72416 5.90694 6.17527 6.23182 6.27716 6.31383 6.38845 6.52275 6.56752 6.70269 6.86786 7.18113 7.28421 7.49628 7.51252 8.12740 8.26234 8.50659 8.73345 8.93248 9.38270 10.88819 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.003462 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.130328 B = 8085.675181 C = 8800.821911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.238 3.762 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.079 3.921 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.703 5.703 13 C 0.497 3.503 14 O -0.538 6.538 15 C -0.153 4.153 16 C 0.235 3.765 17 H 0.117 0.883 18 C -0.098 4.098 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.100 4.100 24 N -0.612 5.612 25 C 0.055 3.945 26 C 0.044 3.956 27 O -0.331 6.331 28 C 0.656 3.344 29 O -0.513 6.513 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.267 0.733 34 H 0.394 0.606 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.105 0.895 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 -3.916 -22.341 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.351 5.351 13 C 0.282 3.718 14 O -0.416 6.416 15 C -0.194 4.194 16 C 0.133 3.867 17 H 0.135 0.865 18 C -0.099 4.099 19 C -0.129 4.129 20 C -0.139 4.139 21 C -0.136 4.136 22 C -0.137 4.137 23 C -0.119 4.119 24 N -0.359 5.359 25 C -0.068 4.068 26 C -0.031 4.031 27 O -0.242 6.242 28 C 0.410 3.590 29 O -0.396 6.396 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.227 0.773 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.535 -2.539 -22.256 23.634 hybrid contribution -0.294 -0.064 0.445 0.537 sum 7.241 -2.603 -21.811 23.128 Atomic orbital electron populations 1.22440 0.99357 1.00743 0.99348 1.19070 0.90110 0.94589 0.82783 0.93509 1.21034 1.33303 1.14373 0.88576 0.90277 1.24823 0.95450 0.96677 0.95538 1.69861 1.44959 1.40100 0.98057 0.86887 0.80571 0.83620 0.77482 1.20294 1.22153 1.18642 1.46188 1.65427 1.13719 1.09808 1.20336 0.79078 0.87737 0.84695 1.90764 1.50405 1.15526 1.84902 1.22121 1.04018 0.99418 0.93853 1.19377 0.92211 0.85443 0.89641 0.86541 1.20140 0.95155 0.98799 0.95798 1.21164 0.96056 0.97413 0.98266 1.21142 0.99723 0.99399 0.93629 1.21193 0.94190 0.99530 0.98729 1.21163 0.96820 0.97908 0.97798 1.21125 0.99635 0.98456 0.92641 1.47729 1.10174 1.05579 1.72369 1.22927 0.82947 0.98155 1.02772 1.24197 0.88102 0.86592 1.04226 1.87270 1.20318 1.33586 1.82978 1.18237 0.83748 0.80694 0.76328 1.91007 1.20830 1.74835 1.52959 0.93532 0.94521 0.92892 0.92279 0.77312 0.88713 0.87515 0.85733 0.85955 0.86113 0.85879 0.85582 0.89049 0.88993 0.87698 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.64 8.96 37.16 0.33 -3.30 16 2 C 0.24 5.63 2.15 -69.08 -0.15 5.48 16 3 H 0.05 1.25 6.63 -51.93 -0.34 0.90 16 4 C -0.53 -14.27 9.31 -34.44 -0.32 -14.59 16 5 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 8 Si 0.88 22.05 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.26 -6.58 6.53 56.52 0.37 -6.21 16 12 N -0.70 -13.29 5.07 -54.93 -0.28 -13.57 16 13 C 0.50 8.80 7.66 -10.99 -0.08 8.72 16 14 O -0.54 -11.97 14.40 5.55 0.08 -11.89 16 15 C -0.15 -1.83 4.88 -27.89 -0.14 -1.96 16 16 C 0.24 2.98 2.14 -69.08 -0.15 2.83 16 17 H 0.12 1.78 7.11 -51.93 -0.37 1.41 16 18 C -0.10 -1.00 4.97 -104.62 -0.52 -1.52 16 19 C -0.11 -0.93 8.14 -39.58 -0.32 -1.25 16 20 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.10 -0.98 9.67 -39.58 -0.38 -1.36 16 24 N -0.61 -8.31 2.08 -172.56 -0.36 -8.67 16 25 C 0.06 0.51 5.97 -3.15 -0.02 0.49 16 26 C 0.04 0.41 8.23 37.73 0.31 0.72 16 27 O -0.33 -5.13 11.09 -37.84 -0.42 -5.55 16 28 C 0.66 11.57 8.11 53.71 0.44 12.01 16 29 O -0.51 -11.17 17.32 -19.11 -0.33 -11.50 16 30 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.39 6.43 8.54 -40.82 -0.35 6.08 16 35 H 0.09 0.91 6.98 -51.93 -0.36 0.55 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.12 0.84 5.43 -52.49 -0.29 0.56 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 1.18 7.95 -52.49 -0.42 0.76 16 42 H 0.09 0.80 7.64 -51.93 -0.40 0.41 16 43 H 0.09 0.59 5.71 -51.93 -0.30 0.30 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -36.95 365.01 -7.44 -44.39 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.97 Total: 4.50 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -2.29 Total: 4.40 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.14 Total: -47.75 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.67 Total: -28.94 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.95 -7.44 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728274416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.263 kcal (2) G-P(sol) polarization free energy of solvation -36.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds