Wall clock time and date at job start Tue Mar 31 2020 18:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47259 * 2 1 4 4 C 1.50703 * 109.47231 * 120.00478 * 2 1 3 5 5 H 1.07997 * 119.99792 * 119.99973 * 4 2 1 6 6 C 1.37882 * 119.99674 * 299.99733 * 4 2 1 7 7 N 1.31506 * 119.99829 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00104 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47230 * 89.99726 * 8 6 4 10 10 H 1.48502 * 109.47242 * 210.00039 * 8 6 4 11 11 H 1.48506 * 109.47256 * 330.00089 * 8 6 4 12 12 N 1.46505 * 109.46990 * 240.00436 * 2 1 3 13 13 C 1.34774 * 120.00301 * 85.00403 * 12 2 1 14 14 O 1.21288 * 119.99763 * 0.26789 * 13 12 2 15 15 C 1.50698 * 120.00374 * 180.02562 * 13 12 2 16 16 C 1.52990 * 109.47258 * 179.97438 * 15 13 12 17 17 H 1.08999 * 109.47551 * 304.99970 * 16 15 13 18 18 C 1.50703 * 109.47079 * 184.99724 * 16 15 13 19 19 C 1.38228 * 120.00005 * 296.48623 * 18 16 15 20 20 C 1.38241 * 119.99768 * 179.78745 * 19 18 16 21 21 C 1.38232 * 120.00309 * 0.44262 * 20 19 18 22 22 C 1.38243 * 119.99517 * 359.81073 * 21 20 19 23 23 C 1.38230 * 120.00202 * 359.97438 * 22 21 20 24 24 N 1.46504 * 109.47243 * 64.99855 * 16 15 13 25 25 C 1.47093 * 125.55575 * 54.28694 * 24 16 15 26 26 C 1.54091 * 103.77409 * 179.97438 * 25 24 16 27 27 O 1.45700 * 104.00951 * 0.02562 * 26 25 24 28 28 C 1.33773 * 109.47650 * 359.75548 * 27 26 25 29 29 O 1.21504 * 123.07386 * 180.24709 * 28 27 26 30 30 H 1.08998 * 109.46962 * 299.99665 * 1 2 3 31 31 H 1.09002 * 109.46915 * 59.99737 * 1 2 3 32 32 H 1.08997 * 109.47007 * 179.97438 * 1 2 3 33 33 H 0.96996 * 120.00495 * 179.97438 * 7 6 4 34 34 H 0.97000 * 119.99593 * 264.99493 * 12 2 1 35 35 H 1.09006 * 109.46899 * 299.99736 * 15 13 12 36 36 H 1.09004 * 109.46802 * 59.99039 * 15 13 12 37 37 H 1.07998 * 120.00559 * 359.97438 * 19 18 16 38 38 H 1.07999 * 119.99848 * 180.27367 * 20 19 18 39 39 H 1.07999 * 120.00576 * 179.83802 * 21 20 19 40 40 H 1.08001 * 119.99627 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00163 * 180.02562 * 23 22 21 42 42 H 1.08993 * 110.56490 * 298.54771 * 25 24 16 43 43 H 1.09004 * 110.56638 * 61.41237 * 25 24 16 44 44 H 1.09001 * 110.52017 * 118.62831 * 26 25 24 45 45 H 1.09000 * 110.52603 * 241.22986 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1372 -0.8597 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9760 1.9950 3.9069 11 1 0.8470 2.1764 1.4921 12 7 2.0183 -0.6905 -1.1963 13 6 2.1471 -0.0182 -2.3572 14 8 1.8633 1.1599 -2.4104 15 6 2.6488 -0.7286 -3.5878 16 6 2.6999 0.2544 -4.7590 17 1 1.7201 0.7133 -4.8913 18 6 3.0836 -0.4820 -6.0166 19 6 4.3232 -1.0860 -6.1130 20 6 4.6733 -1.7653 -7.2649 21 6 3.7875 -1.8328 -8.3239 22 6 2.5498 -1.2242 -8.2295 23 6 2.1979 -0.5487 -7.0760 24 7 3.6928 1.2950 -4.4803 25 6 5.1015 1.0606 -4.1278 26 6 5.6754 2.4792 -3.9469 27 8 4.5417 3.3549 -4.2130 28 6 3.4670 2.6155 -4.5098 29 8 2.3844 3.0972 -4.7785 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9033 -0.5282 4.4375 34 1 2.2490 -1.6317 -1.1527 35 1 3.6480 -1.1212 -3.3987 36 1 1.9759 -1.5504 -3.8326 37 1 5.0169 -1.0299 -5.2872 38 1 5.6401 -2.2410 -7.3385 39 1 4.0621 -2.3612 -9.2249 40 1 1.8575 -1.2772 -9.0568 41 1 1.2308 -0.0737 -7.0020 42 1 5.1748 0.4965 -3.1980 43 1 5.6166 0.5394 -4.9347 44 1 6.0345 2.6190 -2.9272 45 1 6.4778 2.6609 -4.6618 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728274416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:47 Heat of formation + Delta-G solvation = -93.069243 kcal Electronic energy + Delta-G solvation = -29271.745285 eV Core-core repulsion = 25253.993155 eV Total energy + Delta-G solvation = -4017.752130 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.65101 -40.80947 -40.04383 -38.23368 -37.28727 -36.53868 -34.41195 -33.57185 -32.06957 -31.78729 -30.67159 -29.99920 -27.24892 -26.20861 -24.67813 -23.43804 -23.03784 -22.88042 -21.43112 -20.98939 -19.16686 -18.55479 -18.24363 -17.97747 -17.76779 -17.50719 -17.13925 -16.34390 -16.17309 -15.90956 -15.66990 -15.54043 -15.09055 -15.02338 -14.93983 -14.74902 -14.43729 -14.20053 -14.15411 -13.91063 -13.51352 -13.45811 -13.36504 -13.10994 -13.00475 -12.82310 -12.55027 -12.17646 -12.10766 -11.82462 -11.74304 -11.66128 -11.60778 -11.29229 -10.89521 -10.74158 -9.90219 -9.84368 -9.77287 -9.72091 -8.40587 -6.44893 0.33262 0.52392 1.23287 1.32366 1.41475 1.48600 1.76469 1.82451 2.23018 2.41289 2.62477 2.93696 2.96203 3.33455 3.46324 3.61669 3.86453 3.92997 4.10651 4.15127 4.21758 4.28536 4.32095 4.41831 4.44366 4.51993 4.54859 4.58466 4.67091 4.70364 4.72152 4.75448 4.95353 4.99211 5.06325 5.18014 5.30342 5.40677 5.41399 5.58088 5.65277 5.66743 5.69337 6.11421 6.13264 6.39075 6.57179 6.90143 7.02171 7.19160 7.51471 8.74389 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.003462 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.130328 B = 8085.675181 C = 8800.821911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.245 3.755 3 H 0.015 0.985 4 C -0.527 4.527 5 H 0.064 0.936 6 C 0.035 3.965 7 N -0.930 5.930 8 Si 0.932 3.068 9 H -0.262 1.262 10 H -0.291 1.291 11 H -0.272 1.272 12 N -0.700 5.700 13 C 0.496 3.504 14 O -0.586 6.586 15 C -0.136 4.136 16 C 0.236 3.764 17 H 0.077 0.923 18 C -0.108 4.108 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.121 4.121 24 N -0.606 5.606 25 C 0.051 3.949 26 C 0.035 3.965 27 O -0.356 6.356 28 C 0.644 3.356 29 O -0.575 6.575 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.270 0.730 34 H 0.409 0.591 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.151 0.849 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.131 0.869 44 H 0.115 0.885 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.318 -6.076 -24.175 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.139 3.861 3 H 0.032 0.968 4 C -0.566 4.566 5 H 0.082 0.918 6 C -0.166 4.166 7 N -0.569 5.569 8 Si 0.760 3.240 9 H -0.188 1.188 10 H -0.219 1.219 11 H -0.197 1.197 12 N -0.350 5.350 13 C 0.283 3.717 14 O -0.466 6.466 15 C -0.177 4.177 16 C 0.134 3.866 17 H 0.096 0.904 18 C -0.109 4.109 19 C -0.128 4.128 20 C -0.137 4.137 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.139 4.139 24 N -0.352 5.352 25 C -0.070 4.070 26 C -0.038 4.038 27 O -0.266 6.266 28 C 0.399 3.601 29 O -0.464 6.464 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.245 0.755 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.133 0.867 42 H 0.119 0.881 43 H 0.148 0.852 44 H 0.133 0.867 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.598 -4.765 -24.099 26.374 hybrid contribution -0.808 0.557 0.945 1.363 sum 8.789 -4.207 -23.154 25.121 Atomic orbital electron populations 1.22344 0.98376 1.01614 0.98992 1.18662 0.90801 0.92932 0.83671 0.96751 1.21242 1.32180 1.13537 0.89606 0.91806 1.25436 0.96702 0.98836 0.95591 1.69944 1.46653 1.41698 0.98596 0.86118 0.80068 0.80866 0.76907 1.18781 1.21872 1.19694 1.45989 1.65656 1.14353 1.08968 1.21280 0.77647 0.87226 0.85549 1.90770 1.52174 1.17996 1.85652 1.22120 1.06269 0.99108 0.90166 1.19306 0.90725 0.85179 0.91370 0.90434 1.19881 0.96491 0.99914 0.94601 1.21356 0.95224 0.96868 0.99386 1.21499 1.00737 0.98564 0.92863 1.21561 0.93570 0.98755 0.99752 1.21380 0.97805 0.97637 0.97537 1.21205 0.99626 0.99464 0.93652 1.47872 1.12104 1.04280 1.70977 1.23314 0.80532 0.98556 1.04641 1.24723 0.87101 0.85753 1.06243 1.87207 1.21384 1.35332 1.82725 1.18571 0.83513 0.81937 0.76123 1.90933 1.23388 1.76210 1.55823 0.94510 0.94227 0.91332 0.92045 0.75523 0.85102 0.84678 0.83705 0.83142 0.83749 0.84513 0.86741 0.88060 0.85171 0.86707 0.84012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.93 8.96 71.98 0.65 -6.29 16 2 C 0.24 11.56 2.15 44.24 0.10 11.66 16 3 H 0.01 0.79 6.63 -2.38 -0.02 0.77 16 4 C -0.53 -28.14 9.31 25.60 0.24 -27.90 16 5 H 0.06 3.54 7.98 -2.91 -0.02 3.52 16 6 C 0.03 1.93 5.45 84.66 0.46 2.40 16 7 N -0.93 -55.00 13.96 21.45 0.30 -54.70 16 8 Si 0.93 45.71 24.37 68.60 1.67 47.38 16 9 H -0.26 -12.16 6.87 99.48 0.68 -11.48 16 10 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.27 -13.67 6.53 99.48 0.65 -13.02 16 12 N -0.70 -25.77 5.07 -446.08 -2.26 -28.03 16 13 C 0.50 17.23 7.66 87.66 0.67 17.90 16 14 O -0.59 -26.74 14.40 -3.05 -0.04 -26.78 16 15 C -0.14 -2.96 4.88 29.84 0.15 -2.81 16 16 C 0.24 5.86 2.14 44.24 0.09 5.95 16 17 H 0.08 2.54 7.11 -2.39 -0.02 2.52 16 18 C -0.11 -2.01 4.97 -19.87 -0.10 -2.10 16 19 C -0.11 -1.41 8.14 22.27 0.18 -1.22 16 20 C -0.12 -1.23 10.05 22.27 0.22 -1.01 16 21 C -0.12 -1.35 10.05 22.27 0.22 -1.12 16 22 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 23 C -0.12 -2.30 9.67 22.27 0.22 -2.08 16 24 N -0.61 -16.09 2.08 -931.56 -1.94 -18.03 16 25 C 0.05 0.80 5.97 86.64 0.52 1.31 16 26 C 0.04 0.58 8.23 72.35 0.60 1.18 16 27 O -0.36 -11.19 11.09 -47.33 -0.52 -11.71 16 28 C 0.64 23.60 8.11 129.91 1.05 24.65 16 29 O -0.58 -26.94 17.32 19.67 0.34 -26.60 16 30 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 34 H 0.41 12.55 8.54 -92.71 -0.79 11.75 16 35 H 0.13 1.94 6.98 -2.38 -0.02 1.92 16 36 H 0.14 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.15 1.16 5.43 -2.91 -0.02 1.15 16 38 H 0.15 0.74 8.06 -2.91 -0.02 0.71 16 39 H 0.14 0.94 8.06 -2.91 -0.02 0.91 16 40 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 41 H 0.11 2.31 7.95 -2.91 -0.02 2.29 16 42 H 0.10 1.41 7.64 -2.39 -0.02 1.39 16 43 H 0.13 1.04 5.71 -2.38 -0.01 1.02 16 44 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -85.69 365.01 3.19 -82.50 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.16 Total: 17.08 kcal Atomic # 6 Polarization: 13.41 SS G_CDS: 5.49 Total: 18.89 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -3.90 Total: -100.76 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -0.23 Total: -65.10 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.67 Total: 47.38 kcal Total: -85.69 3.19 -82.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728274416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.569 kcal (2) G-P(sol) polarization free energy of solvation -85.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds