Wall clock time and date at job start Tue Mar 31 2020 18:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47221 * 2 1 4 4 C 1.50707 * 109.46869 * 240.00000 * 2 1 3 5 5 H 1.08001 * 119.99371 * 240.00044 * 4 2 1 6 6 C 1.37875 * 120.00062 * 59.72544 * 4 2 1 7 7 N 1.31514 * 119.99968 * 0.27608 * 6 4 2 8 8 Si 1.86795 * 119.99756 * 180.27421 * 6 4 2 9 9 H 1.48508 * 109.46957 * 90.00241 * 8 6 4 10 10 H 1.48499 * 109.47248 * 209.99652 * 8 6 4 11 11 H 1.48497 * 109.47361 * 330.00069 * 8 6 4 12 12 N 1.46498 * 109.46972 * 120.00178 * 2 1 3 13 13 C 1.34773 * 119.99763 * 274.99376 * 12 2 1 14 14 O 1.21276 * 120.00240 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00228 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47584 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47291 * 54.99933 * 16 15 13 18 18 C 1.50699 * 109.47333 * 175.00099 * 16 15 13 19 19 C 1.38240 * 120.00097 * 64.53308 * 18 16 15 20 20 C 1.38236 * 119.99862 * 179.81338 * 19 18 16 21 21 C 1.38239 * 119.99794 * 0.39424 * 20 19 18 22 22 C 1.38232 * 120.00248 * 359.86244 * 21 20 19 23 23 C 1.38236 * 119.99742 * 244.81020 * 18 16 15 24 24 N 1.46504 * 109.46657 * 294.99954 * 16 15 13 25 25 C 1.47087 * 125.55879 * 320.70497 * 24 16 15 26 26 C 1.54091 * 103.77675 * 179.97438 * 25 24 16 27 27 O 1.45698 * 104.00808 * 0.02562 * 26 25 24 28 28 C 1.33771 * 109.47533 * 359.75399 * 27 26 25 29 29 O 1.21514 * 123.07481 * 180.24402 * 28 27 26 30 30 H 1.08996 * 109.46943 * 59.99562 * 1 2 3 31 31 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47173 * 300.00308 * 1 2 3 33 33 H 0.96994 * 120.00082 * 180.02562 * 7 6 4 34 34 H 0.96998 * 120.00294 * 94.99612 * 12 2 1 35 35 H 1.09006 * 109.46932 * 300.00395 * 15 13 12 36 36 H 1.09000 * 109.47263 * 59.99527 * 15 13 12 37 37 H 1.08004 * 119.99643 * 0.02562 * 19 18 16 38 38 H 1.08001 * 120.00068 * 180.23958 * 20 19 18 39 39 H 1.07999 * 119.99322 * 179.83389 * 21 20 19 40 40 H 1.08001 * 119.99788 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00257 * 359.97438 * 23 18 16 42 42 H 1.09000 * 110.56960 * 298.55421 * 25 24 16 43 43 H 1.09006 * 110.56939 * 61.26349 * 25 24 16 44 44 H 1.09002 * 110.52088 * 118.62969 * 26 25 24 45 45 H 1.08994 * 110.52612 * 241.36808 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6945 -0.2427 -2.4828 7 7 0.9385 0.8266 -2.6034 8 14 2.3108 -1.1278 -4.0079 9 1 1.3305 -2.1702 -4.4053 10 1 2.4719 -0.1519 -5.1155 11 1 3.6198 -1.7651 -3.7154 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4116 15 6 2.6499 -0.7285 3.5874 16 6 2.7008 0.2544 4.7588 17 1 1.7207 0.7126 4.8916 18 6 3.0855 -0.4819 6.0161 19 6 4.3337 -1.0670 6.1200 20 6 4.6879 -1.7391 7.2749 21 6 3.7911 -1.8330 8.3227 22 6 2.5411 -1.2524 8.2167 23 6 2.1882 -0.5770 7.0634 24 7 3.6929 1.2957 4.4797 25 6 4.9969 1.0835 3.8331 26 6 5.6192 2.4925 3.7910 27 8 4.6116 3.3418 4.4123 28 6 3.5583 2.5975 4.7674 29 8 2.5709 3.0592 5.3045 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7005 1.1554 -3.4844 34 1 2.2489 -1.6318 1.1526 35 1 1.9777 -1.5508 3.8325 36 1 3.6492 -1.1204 3.3979 37 1 5.0332 -0.9961 5.3002 38 1 5.6645 -2.1930 7.3576 39 1 4.0670 -2.3604 9.2238 40 1 1.8403 -1.3262 9.0352 41 1 1.2116 -0.1233 6.9806 42 1 5.6140 0.4098 4.4276 43 1 4.8650 0.6906 2.8249 44 1 6.5461 2.5181 4.3641 45 1 5.7971 2.8011 2.7609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728274418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:56 Heat of formation + Delta-G solvation = -76.920889 kcal Electronic energy + Delta-G solvation = -29155.036706 eV Core-core repulsion = 25137.984822 eV Total energy + Delta-G solvation = -4017.051885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54010 -39.64293 -38.80521 -36.91471 -36.02165 -34.72678 -32.64940 -32.35722 -31.12358 -30.15155 -29.57275 -28.39521 -25.33234 -25.08789 -23.59846 -22.72744 -22.04614 -21.28839 -20.15739 -19.40433 -17.78256 -17.25797 -17.08073 -16.80419 -16.61416 -15.85354 -15.32956 -15.18085 -14.99139 -14.72927 -14.59986 -14.15862 -14.02720 -13.90381 -13.69622 -13.49601 -12.96515 -12.75726 -12.68449 -12.42099 -12.32772 -12.17957 -11.75374 -11.54957 -11.39960 -11.12756 -11.07835 -10.97023 -10.74600 -10.56748 -10.38835 -10.35168 -10.27369 -9.23916 -9.11618 -9.08636 -8.90241 -8.80056 -8.59205 -7.95628 -6.16037 -4.26157 1.06816 1.20214 2.55499 3.01830 3.20422 3.27305 3.28991 3.32316 3.50885 3.65503 3.92960 4.15269 4.30287 4.44670 4.54959 4.70329 4.74288 4.80292 4.91643 4.99660 5.13219 5.15388 5.17388 5.29287 5.34528 5.44129 5.46923 5.53036 5.68545 5.75569 5.78809 5.96026 6.24493 6.29904 6.34713 6.57218 6.77552 6.79774 6.94335 7.12476 7.41931 7.50811 7.52545 7.65021 7.87500 8.11930 8.26112 8.60932 8.73582 9.07652 9.41764 10.89719 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.003254 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.792569 B = 8602.003392 C = 9279.864890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.710 5.710 13 C 0.496 3.504 14 O -0.541 6.541 15 C -0.152 4.152 16 C 0.237 3.763 17 H 0.113 0.887 18 C -0.098 4.098 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.099 4.099 24 N -0.607 5.607 25 C 0.059 3.941 26 C 0.045 3.955 27 O -0.331 6.331 28 C 0.655 3.345 29 O -0.521 6.521 30 H 0.090 0.910 31 H 0.026 0.974 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.376 -7.379 17.879 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.280 3.720 14 O -0.419 6.419 15 C -0.193 4.193 16 C 0.134 3.866 17 H 0.131 0.869 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.137 4.137 23 C -0.117 4.117 24 N -0.354 5.354 25 C -0.064 4.064 26 C -0.030 4.030 27 O -0.241 6.241 28 C 0.409 3.591 29 O -0.405 6.405 30 H 0.108 0.892 31 H 0.045 0.955 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.582 -5.884 18.027 21.247 hybrid contribution 0.536 -1.208 -1.078 1.705 sum 10.118 -7.092 16.950 20.975 Atomic orbital electron populations 1.22075 0.98513 0.99048 1.00960 1.18717 0.91009 0.93877 0.79962 0.93484 1.21205 1.32532 1.13286 0.90347 0.92138 1.24896 0.94809 0.94932 0.99081 1.69903 1.35681 1.22401 1.23935 0.86457 0.79113 0.79308 0.82253 1.20536 1.21061 1.19879 1.46539 1.65215 1.13456 1.10571 1.20256 0.79375 0.87722 0.84674 1.90739 1.50503 1.15755 1.84871 1.22115 1.03972 0.99334 0.93912 1.19372 0.92012 0.85377 0.89792 0.86866 1.20226 0.95030 0.98674 0.96053 1.21079 0.95955 0.97443 0.98050 1.21125 0.99600 0.99611 0.93698 1.21174 0.94084 0.99709 0.98757 1.21154 0.96768 0.98064 0.97755 1.21128 0.99649 0.98223 0.92731 1.47718 1.18278 1.07178 1.62204 1.22854 0.85188 0.98033 1.00363 1.24201 0.90958 0.87327 1.00502 1.87256 1.28248 1.35001 1.73589 1.18264 0.82525 0.80497 0.77807 1.91003 1.27803 1.75104 1.46638 0.89181 0.95530 0.96638 0.92523 0.78020 0.87540 0.88817 0.86086 0.86062 0.86172 0.85902 0.85562 0.89365 0.88938 0.87958 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.30 16 2 C 0.27 6.58 2.56 -69.08 -0.18 6.40 16 3 H 0.05 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.54 -13.76 8.73 -34.44 -0.30 -14.06 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.63 11.31 55.43 0.63 -24.01 16 8 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.71 -13.77 5.07 -54.93 -0.28 -14.05 16 13 C 0.50 9.05 7.44 -10.99 -0.08 8.97 16 14 O -0.54 -12.43 15.02 5.56 0.08 -12.35 16 15 C -0.15 -1.90 4.58 -27.88 -0.13 -2.03 16 16 C 0.24 3.20 2.07 -69.08 -0.14 3.05 16 17 H 0.11 1.84 7.29 -51.93 -0.38 1.47 16 18 C -0.10 -1.11 4.96 -104.62 -0.52 -1.63 16 19 C -0.11 -1.00 8.83 -39.58 -0.35 -1.35 16 20 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.10 -1.07 9.67 -39.58 -0.38 -1.45 16 24 N -0.61 -8.71 1.85 -172.55 -0.32 -9.03 16 25 C 0.06 0.61 6.16 -3.15 -0.02 0.59 16 26 C 0.05 0.45 8.23 37.73 0.31 0.76 16 27 O -0.33 -5.24 11.09 -37.83 -0.42 -5.66 16 28 C 0.66 11.81 8.85 53.71 0.48 12.28 16 29 O -0.52 -11.40 17.42 -19.12 -0.33 -11.73 16 30 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.39 6.38 8.54 -40.82 -0.35 6.03 16 35 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 0.93 7.00 -51.93 -0.36 0.56 16 37 H 0.12 0.93 5.48 -52.48 -0.29 0.64 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.13 1.32 7.95 -52.49 -0.42 0.90 16 42 H 0.09 0.62 5.89 -51.93 -0.31 0.31 16 43 H 0.09 1.00 7.47 -51.93 -0.39 0.61 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -35.37 373.59 -8.41 -43.78 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.12 Total: 6.66 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.26 Total: 5.58 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.03 Total: -47.08 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.67 Total: -29.74 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.37 -8.41 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728274418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.138 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds