Wall clock time and date at job start Tue Mar 31 2020 18:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47221 * 2 1 4 4 C 1.50707 * 109.46869 * 240.00000 * 2 1 3 5 5 H 1.08001 * 119.99371 * 240.00044 * 4 2 1 6 6 C 1.37875 * 120.00062 * 59.72544 * 4 2 1 7 7 N 1.31514 * 119.99968 * 0.27608 * 6 4 2 8 8 Si 1.86795 * 119.99756 * 180.27421 * 6 4 2 9 9 H 1.48508 * 109.46957 * 90.00241 * 8 6 4 10 10 H 1.48499 * 109.47248 * 209.99652 * 8 6 4 11 11 H 1.48497 * 109.47361 * 330.00069 * 8 6 4 12 12 N 1.46498 * 109.46972 * 120.00178 * 2 1 3 13 13 C 1.34773 * 119.99763 * 274.99376 * 12 2 1 14 14 O 1.21276 * 120.00240 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00228 * 180.02562 * 13 12 2 16 16 C 1.52999 * 109.47584 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47291 * 54.99933 * 16 15 13 18 18 C 1.50699 * 109.47333 * 175.00099 * 16 15 13 19 19 C 1.38240 * 120.00097 * 64.53308 * 18 16 15 20 20 C 1.38236 * 119.99862 * 179.81338 * 19 18 16 21 21 C 1.38239 * 119.99794 * 0.39424 * 20 19 18 22 22 C 1.38232 * 120.00248 * 359.86244 * 21 20 19 23 23 C 1.38236 * 119.99742 * 244.81020 * 18 16 15 24 24 N 1.46504 * 109.46657 * 294.99954 * 16 15 13 25 25 C 1.47087 * 125.55879 * 320.70497 * 24 16 15 26 26 C 1.54091 * 103.77675 * 179.97438 * 25 24 16 27 27 O 1.45698 * 104.00808 * 0.02562 * 26 25 24 28 28 C 1.33771 * 109.47533 * 359.75399 * 27 26 25 29 29 O 1.21514 * 123.07481 * 180.24402 * 28 27 26 30 30 H 1.08996 * 109.46943 * 59.99562 * 1 2 3 31 31 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47173 * 300.00308 * 1 2 3 33 33 H 0.96994 * 120.00082 * 180.02562 * 7 6 4 34 34 H 0.96998 * 120.00294 * 94.99612 * 12 2 1 35 35 H 1.09006 * 109.46932 * 300.00395 * 15 13 12 36 36 H 1.09000 * 109.47263 * 59.99527 * 15 13 12 37 37 H 1.08004 * 119.99643 * 0.02562 * 19 18 16 38 38 H 1.08001 * 120.00068 * 180.23958 * 20 19 18 39 39 H 1.07999 * 119.99322 * 179.83389 * 21 20 19 40 40 H 1.08001 * 119.99788 * 179.97438 * 22 21 20 41 41 H 1.08000 * 120.00257 * 359.97438 * 23 18 16 42 42 H 1.09000 * 110.56960 * 298.55421 * 25 24 16 43 43 H 1.09006 * 110.56939 * 61.26349 * 25 24 16 44 44 H 1.09002 * 110.52088 * 118.62969 * 26 25 24 45 45 H 1.08994 * 110.52612 * 241.36808 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6945 -0.2427 -2.4828 7 7 0.9385 0.8266 -2.6034 8 14 2.3108 -1.1278 -4.0079 9 1 1.3305 -2.1702 -4.4053 10 1 2.4719 -0.1519 -5.1155 11 1 3.6198 -1.7651 -3.7154 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8583 1.1583 2.4116 15 6 2.6499 -0.7285 3.5874 16 6 2.7008 0.2544 4.7588 17 1 1.7207 0.7126 4.8916 18 6 3.0855 -0.4819 6.0161 19 6 4.3337 -1.0670 6.1200 20 6 4.6879 -1.7391 7.2749 21 6 3.7911 -1.8330 8.3227 22 6 2.5411 -1.2524 8.2167 23 6 2.1882 -0.5770 7.0634 24 7 3.6929 1.2957 4.4797 25 6 4.9969 1.0835 3.8331 26 6 5.6192 2.4925 3.7910 27 8 4.6116 3.3418 4.4123 28 6 3.5583 2.5975 4.7674 29 8 2.5709 3.0592 5.3045 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.7005 1.1554 -3.4844 34 1 2.2489 -1.6318 1.1526 35 1 1.9777 -1.5508 3.8325 36 1 3.6492 -1.1204 3.3979 37 1 5.0332 -0.9961 5.3002 38 1 5.6645 -2.1930 7.3576 39 1 4.0670 -2.3604 9.2238 40 1 1.8403 -1.3262 9.0352 41 1 1.2116 -0.1233 6.9806 42 1 5.6140 0.4098 4.4276 43 1 4.8650 0.6906 2.8249 44 1 6.5461 2.5181 4.3641 45 1 5.7971 2.8011 2.7609 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728274418.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:55 Heat of formation + Delta-G solvation = -100.570048 kcal Electronic energy + Delta-G solvation = -29156.062211 eV Core-core repulsion = 25137.984822 eV Total energy + Delta-G solvation = -4018.077389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.67378 -40.77300 -40.00259 -38.27477 -37.24477 -36.47166 -34.32936 -33.54343 -31.82347 -31.48639 -30.56726 -29.84572 -27.35073 -26.18633 -24.58274 -23.48881 -22.98376 -22.95784 -21.40428 -20.93850 -19.05563 -18.48650 -18.31846 -17.93899 -17.68223 -17.20678 -17.10317 -16.26560 -16.17584 -15.94016 -15.67046 -15.58065 -15.04826 -14.99813 -14.84983 -14.48019 -14.30024 -14.18429 -13.90759 -13.54758 -13.48616 -13.27844 -13.17564 -12.95150 -12.85269 -12.73347 -12.52701 -12.29055 -12.15284 -12.11954 -11.83738 -11.79442 -11.63482 -11.10020 -10.75997 -10.57804 -9.91053 -9.79752 -9.72898 -9.69969 -8.17007 -6.35159 0.33430 0.52329 1.45824 1.45851 1.46209 1.56916 1.72856 1.84997 2.34166 2.57525 2.60394 2.93382 3.13690 3.31120 3.47162 3.61372 3.85763 3.90381 4.09656 4.14717 4.21752 4.27616 4.32898 4.43362 4.53656 4.54528 4.67719 4.71562 4.74548 4.75671 4.89779 4.92188 5.06108 5.09931 5.17732 5.38091 5.43566 5.57715 5.62057 5.64414 5.68754 5.69418 5.90849 6.09991 6.11477 6.35313 6.74132 6.96427 6.99287 7.33649 7.60944 8.89213 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.003254 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.792569 B = 8602.003392 C = 9279.864890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.274 3.726 3 H -0.006 1.006 4 C -0.543 4.543 5 H 0.078 0.922 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.973 3.027 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.258 1.258 12 N -0.704 5.704 13 C 0.494 3.506 14 O -0.593 6.593 15 C -0.133 4.133 16 C 0.237 3.763 17 H 0.070 0.930 18 C -0.110 4.110 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.122 4.122 24 N -0.602 5.602 25 C 0.055 3.945 26 C 0.038 3.962 27 O -0.353 6.353 28 C 0.643 3.357 29 O -0.581 6.581 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.006 0.994 33 H 0.264 0.736 34 H 0.407 0.593 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.143 0.857 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.765 -11.165 18.605 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.012 0.988 4 C -0.581 4.581 5 H 0.096 0.904 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.798 3.202 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.182 1.182 12 N -0.353 5.353 13 C 0.281 3.719 14 O -0.474 6.474 15 C -0.173 4.173 16 C 0.135 3.865 17 H 0.088 0.912 18 C -0.112 4.112 19 C -0.125 4.125 20 C -0.138 4.138 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.141 4.141 24 N -0.348 5.348 25 C -0.067 4.067 26 C -0.036 4.036 27 O -0.263 6.263 28 C 0.397 3.603 29 O -0.470 6.470 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.130 0.870 42 H 0.152 0.848 43 H 0.108 0.892 44 H 0.165 0.835 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 13.026 -9.750 18.759 24.832 hybrid contribution -0.487 -0.008 -1.257 1.348 sum 12.539 -9.757 17.503 23.638 Atomic orbital electron populations 1.21914 0.98940 0.99337 0.99208 1.18247 0.90640 0.91809 0.82270 0.98770 1.21558 1.32390 1.13567 0.90567 0.90355 1.25846 0.94901 0.95548 1.02533 1.70075 1.37143 1.24179 1.24528 0.85329 0.79157 0.77909 0.77842 1.19864 1.21625 1.18222 1.46237 1.65285 1.14220 1.09563 1.21224 0.77873 0.87158 0.85658 1.90738 1.52470 1.18517 1.85717 1.22085 1.06424 0.98851 0.89960 1.19293 0.90358 0.85195 0.91662 0.91158 1.19978 0.96436 0.99845 0.94909 1.21284 0.95041 0.96885 0.99268 1.21503 1.00723 0.98663 0.92866 1.21558 0.93396 0.98868 0.99821 1.21377 0.97870 0.97761 0.97409 1.21207 0.99572 0.99397 0.93903 1.47869 1.19696 1.05993 1.61225 1.23221 0.83669 0.99073 1.00740 1.24716 0.91055 0.86315 1.01503 1.87197 1.28809 1.36505 1.73797 1.18593 0.82386 0.81634 0.77682 1.90931 1.30210 1.76417 1.49425 0.91803 0.93980 0.97509 0.92699 0.75774 0.84735 0.84777 0.83930 0.83053 0.83615 0.84484 0.86962 0.84806 0.89220 0.83512 0.87023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.27 13.87 2.56 44.25 0.11 13.98 16 3 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 4 C -0.54 -27.65 8.73 25.60 0.22 -27.43 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.61 5.30 84.65 0.45 1.05 16 7 N -0.92 -52.85 11.31 21.45 0.24 -52.61 16 8 Si 0.97 40.85 29.54 68.60 2.03 42.88 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 12 N -0.70 -26.89 5.07 -446.10 -2.26 -29.15 16 13 C 0.49 18.08 7.44 87.66 0.65 18.73 16 14 O -0.59 -28.74 15.02 -3.02 -0.05 -28.79 16 15 C -0.13 -3.07 4.58 29.85 0.14 -2.93 16 16 C 0.24 6.41 2.07 44.24 0.09 6.50 16 17 H 0.07 2.50 7.29 -2.39 -0.02 2.49 16 18 C -0.11 -2.33 4.96 -19.86 -0.10 -2.43 16 19 C -0.11 -1.58 8.83 22.27 0.20 -1.38 16 20 C -0.12 -1.45 10.05 22.27 0.22 -1.23 16 21 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 22 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 23 C -0.12 -2.64 9.67 22.27 0.22 -2.43 16 24 N -0.60 -17.21 1.85 -931.55 -1.73 -18.93 16 25 C 0.05 0.98 6.16 86.64 0.53 1.52 16 26 C 0.04 0.68 8.23 72.35 0.60 1.28 16 27 O -0.35 -11.44 11.09 -47.32 -0.52 -11.96 16 28 C 0.64 24.35 8.85 129.91 1.15 25.50 16 29 O -0.58 -27.62 17.42 19.64 0.34 -27.28 16 30 H 0.06 3.61 6.06 -2.39 -0.01 3.59 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.94 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.41 12.42 8.54 -92.71 -0.79 11.62 16 35 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.13 2.05 7.00 -2.39 -0.02 2.04 16 37 H 0.14 1.38 5.48 -2.91 -0.02 1.37 16 38 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 39 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.11 2.60 7.95 -2.91 -0.02 2.58 16 42 H 0.13 1.19 5.89 -2.39 -0.01 1.17 16 43 H 0.09 1.70 7.47 -2.38 -0.02 1.68 16 44 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -84.89 373.59 3.88 -81.01 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.23 Total: 23.56 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 5.60 Total: 21.27 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -3.74 Total: -100.69 kcal Atomic # 8 Polarization: -67.80 SS G_CDS: -0.23 Total: -68.03 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -84.89 3.88 -81.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728274418.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.556 kcal (2) G-P(sol) polarization free energy of solvation -84.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds