Wall clock time and date at job start Tue Mar 31 2020 18:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46962 * 2 1 4 4 C 1.50697 * 109.46765 * 239.99920 * 2 1 3 5 5 H 1.07996 * 120.00345 * 274.97581 * 4 2 1 6 6 C 1.37874 * 119.99871 * 94.98007 * 4 2 1 7 7 N 1.31518 * 120.00099 * 185.65838 * 6 4 2 8 8 Si 1.86803 * 120.00170 * 5.66320 * 6 4 2 9 9 H 1.48498 * 109.47302 * 86.30439 * 8 6 4 10 10 H 1.48499 * 109.47027 * 206.31201 * 8 6 4 11 11 H 1.48508 * 109.46632 * 326.30494 * 8 6 4 12 12 N 1.46502 * 109.46966 * 119.99838 * 2 1 3 13 13 C 1.34773 * 120.00254 * 274.99861 * 12 2 1 14 14 O 1.21286 * 119.99853 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99955 * 180.02562 * 13 12 2 16 16 C 1.53004 * 109.47123 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47046 * 305.00365 * 16 15 13 18 18 C 1.50693 * 109.47275 * 185.00082 * 16 15 13 19 19 C 1.38233 * 120.00575 * 283.48928 * 18 16 15 20 20 C 1.38229 * 120.00392 * 179.79017 * 19 18 16 21 21 C 1.38236 * 119.99871 * 0.43656 * 20 19 18 22 22 C 1.38229 * 119.99956 * 359.81097 * 21 20 19 23 23 C 1.38236 * 120.00289 * 359.97438 * 22 21 20 24 24 N 1.46501 * 109.47011 * 65.00181 * 16 15 13 25 25 C 1.47094 * 125.55918 * 50.15987 * 24 16 15 26 26 C 1.54088 * 103.77893 * 179.97438 * 25 24 16 27 27 O 1.45708 * 104.00809 * 0.02562 * 26 25 24 28 28 C 1.33773 * 109.47320 * 359.75267 * 27 26 25 29 29 O 1.21510 * 123.07404 * 180.24007 * 28 27 26 30 30 H 1.09005 * 109.47042 * 174.68982 * 1 2 3 31 31 H 1.09003 * 109.47349 * 54.68812 * 1 2 3 32 32 H 1.09002 * 109.47180 * 294.68281 * 1 2 3 33 33 H 0.96998 * 119.99973 * 179.97438 * 7 6 4 34 34 H 0.96997 * 119.99464 * 95.00032 * 12 2 1 35 35 H 1.08990 * 109.47361 * 300.00335 * 15 13 12 36 36 H 1.09000 * 109.46984 * 60.00241 * 15 13 12 37 37 H 1.08004 * 119.99286 * 359.97438 * 19 18 16 38 38 H 1.08001 * 119.99970 * 180.27540 * 20 19 18 39 39 H 1.08000 * 119.99901 * 179.83990 * 21 20 19 40 40 H 1.08001 * 119.99900 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.00296 * 179.97438 * 23 22 21 42 42 H 1.09001 * 110.56465 * 298.55552 * 25 24 16 43 43 H 1.09003 * 110.56384 * 61.40417 * 25 24 16 44 44 H 1.08998 * 110.52404 * 118.62822 * 26 25 24 45 45 H 1.08999 * 110.52242 * 241.23539 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1358 -1.7854 -1.2289 6 6 2.3597 0.0120 -2.3582 7 7 2.6912 -0.6134 -3.4666 8 14 2.3328 1.8793 -2.3118 9 1 3.6401 2.3811 -1.8177 10 1 2.0850 2.4049 -3.6784 11 1 1.2514 2.3362 -1.4022 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7286 3.5874 16 6 2.7019 0.2547 4.7586 17 1 3.3033 1.1201 4.4800 18 6 3.3192 -0.4217 5.9553 19 6 2.5784 -1.3204 6.6999 20 6 3.1461 -1.9441 7.7951 21 6 4.4517 -1.6623 8.1512 22 6 5.1909 -0.7598 7.4097 23 6 4.6247 -0.1394 6.3118 24 7 1.3433 0.6906 5.0908 25 6 0.1911 -0.1960 5.3146 26 6 -0.9642 0.7750 5.6256 27 8 -0.3485 2.0932 5.5447 28 6 0.9487 1.9619 5.2454 29 8 1.6998 2.9090 5.1218 30 1 -0.3633 -1.0233 -0.0951 31 1 -0.3634 0.5940 -0.8386 32 1 -0.3634 0.4292 0.9338 33 1 2.9212 -0.1052 -4.2601 34 1 2.2490 -1.6317 1.1526 35 1 1.9778 -1.5508 3.8325 36 1 3.6492 -1.1203 3.3978 37 1 1.5570 -1.5375 6.4241 38 1 2.5687 -2.6496 8.3742 39 1 4.8944 -2.1477 9.0085 40 1 6.2111 -0.5400 7.6877 41 1 5.2020 0.5661 5.7328 42 1 -0.0264 -0.7751 4.4171 43 1 0.3750 -0.8562 6.1622 44 1 -1.7559 0.6774 4.8828 45 1 -1.3562 0.5945 6.6265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728274419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:00 Heat of formation + Delta-G solvation = -68.568925 kcal Electronic energy + Delta-G solvation = -29317.976117 eV Core-core repulsion = 25301.286401 eV Total energy + Delta-G solvation = -4016.689716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64240 -39.69505 -38.90081 -36.96732 -36.10710 -34.79955 -32.70270 -32.34882 -31.16166 -30.51645 -29.79476 -28.81393 -25.42216 -25.13599 -23.84864 -22.73498 -22.02558 -21.20984 -20.18452 -19.55816 -17.87687 -17.46963 -17.21641 -16.94147 -16.66785 -16.03018 -15.57343 -15.29300 -15.01360 -14.79991 -14.56207 -14.21472 -14.07273 -13.93753 -13.65581 -13.51716 -13.19403 -12.82239 -12.68161 -12.56765 -12.46383 -12.31735 -12.14055 -11.71180 -11.45584 -11.32333 -11.11682 -11.09920 -10.82985 -10.62055 -10.60918 -10.41611 -9.88238 -9.30315 -9.22833 -9.16426 -8.96126 -8.86556 -8.70344 -8.10954 -6.25966 -4.29850 1.03719 1.15454 2.46315 2.97400 3.22641 3.28005 3.34526 3.43074 3.44143 3.56705 3.86210 4.02786 4.30080 4.31563 4.45364 4.63933 4.69770 4.74343 4.83944 4.91240 5.05165 5.07585 5.13758 5.26806 5.29643 5.34244 5.40116 5.47747 5.63146 5.71376 5.74375 5.91979 6.20212 6.25056 6.26910 6.31033 6.47057 6.53073 6.64636 6.73054 6.91896 7.14810 7.35380 7.45731 7.53530 8.10574 8.22269 8.53919 8.74220 8.96126 9.36543 10.85609 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.003625 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.499332 B = 7721.773716 C = 8631.341543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.231 3.769 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.889 5.889 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.705 5.705 13 C 0.495 3.505 14 O -0.543 6.543 15 C -0.152 4.152 16 C 0.235 3.765 17 H 0.117 0.883 18 C -0.096 4.096 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.102 4.102 24 N -0.610 5.610 25 C 0.051 3.949 26 C 0.044 3.956 27 O -0.331 6.331 28 C 0.656 3.344 29 O -0.514 6.514 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.268 0.732 34 H 0.392 0.608 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -6.596 23.759 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.129 3.871 3 H 0.068 0.932 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.354 5.354 13 C 0.280 3.720 14 O -0.421 6.421 15 C -0.193 4.193 16 C 0.133 3.867 17 H 0.135 0.865 18 C -0.097 4.097 19 C -0.138 4.138 20 C -0.139 4.139 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.121 4.121 24 N -0.357 5.357 25 C -0.072 4.072 26 C -0.031 4.031 27 O -0.241 6.241 28 C 0.409 3.591 29 O -0.397 6.397 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.225 0.775 35 H 0.112 0.888 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.783 -4.991 23.510 24.100 hybrid contribution 0.103 0.102 -0.239 0.279 sum -1.680 -4.889 23.272 23.839 Atomic orbital electron populations 1.22194 0.98723 1.00359 0.99085 1.19122 0.90802 0.94422 0.82775 0.93189 1.20997 1.45388 0.95555 0.94974 0.90388 1.24937 0.93567 0.98628 0.95133 1.69883 1.44907 1.36225 1.01459 0.86904 0.79873 0.85809 0.77417 1.19827 1.21145 1.18460 1.46640 1.65090 1.13794 1.09827 1.20380 0.79162 0.87761 0.84741 1.90745 1.50685 1.15706 1.85005 1.22118 1.04480 0.99172 0.93567 1.19401 0.79969 0.97548 0.89798 0.86469 1.20189 0.94711 0.97573 0.97205 1.21397 1.00095 0.96546 0.95718 1.21135 0.95528 0.99905 0.97301 1.21182 0.94662 0.98229 0.99757 1.21155 1.00016 0.96949 0.95400 1.21099 0.94575 0.99403 0.97018 1.47705 1.09486 1.05566 1.72960 1.23085 0.85815 0.94883 1.03420 1.24192 0.95829 0.78723 1.04351 1.87273 1.22314 1.30320 1.84218 1.18242 0.80981 0.83871 0.75961 1.91018 1.52488 1.41049 1.55184 0.93533 0.93010 0.95470 0.92218 0.77490 0.88815 0.87387 0.85287 0.86048 0.86146 0.85852 0.85524 0.89089 0.88527 0.87789 0.87930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.47 37.16 0.35 -2.76 16 2 C 0.23 5.41 2.23 -69.08 -0.15 5.25 16 3 H 0.05 1.31 4.66 -51.93 -0.24 1.07 16 4 C -0.53 -14.08 9.04 -34.44 -0.31 -14.39 16 5 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 7 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 8 Si 0.87 21.86 27.06 -169.99 -4.60 17.26 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.26 -6.50 6.73 56.52 0.38 -6.12 16 12 N -0.70 -13.38 5.07 -54.93 -0.28 -13.66 16 13 C 0.50 8.84 7.66 -10.99 -0.08 8.76 16 14 O -0.54 -12.15 14.62 5.55 0.08 -12.06 16 15 C -0.15 -1.86 4.97 -27.88 -0.14 -2.00 16 16 C 0.24 3.05 2.12 -69.08 -0.15 2.91 16 17 H 0.12 1.87 7.22 -51.93 -0.37 1.49 16 18 C -0.10 -1.02 4.95 -104.63 -0.52 -1.53 16 19 C -0.12 -1.05 9.07 -39.59 -0.36 -1.41 16 20 C -0.12 -0.95 10.05 -39.59 -0.40 -1.34 16 21 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 22 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 23 C -0.10 -1.05 9.67 -39.58 -0.38 -1.43 16 24 N -0.61 -8.20 1.93 -172.55 -0.33 -8.53 16 25 C 0.05 0.45 6.15 -3.15 -0.02 0.43 16 26 C 0.04 0.38 8.23 37.73 0.31 0.69 16 27 O -0.33 -4.96 11.09 -37.84 -0.42 -5.37 16 28 C 0.66 11.41 8.38 53.71 0.45 11.86 16 29 O -0.51 -11.18 17.33 -19.12 -0.33 -11.51 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.39 6.43 8.59 -40.82 -0.35 6.08 16 35 H 0.09 0.89 7.30 -51.93 -0.38 0.51 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.13 0.89 4.22 -52.48 -0.22 0.67 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.13 1.22 8.01 -52.49 -0.42 0.80 16 42 H 0.09 0.75 7.62 -51.93 -0.40 0.36 16 43 H 0.10 0.56 4.97 -51.93 -0.26 0.30 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -36.90 371.53 -7.83 -44.73 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.03 Total: 4.37 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -2.29 Total: 4.45 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 0.16 Total: -47.45 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.67 Total: -28.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.60 Total: 17.26 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.90 -7.83 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728274419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.843 kcal (2) G-P(sol) polarization free energy of solvation -36.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds