Wall clock time and date at job start Tue Mar 31 2020 18:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46962 * 2 1 4 4 C 1.50697 * 109.46765 * 239.99920 * 2 1 3 5 5 H 1.07996 * 120.00345 * 274.97581 * 4 2 1 6 6 C 1.37874 * 119.99871 * 94.98007 * 4 2 1 7 7 N 1.31518 * 120.00099 * 185.65838 * 6 4 2 8 8 Si 1.86803 * 120.00170 * 5.66320 * 6 4 2 9 9 H 1.48498 * 109.47302 * 86.30439 * 8 6 4 10 10 H 1.48499 * 109.47027 * 206.31201 * 8 6 4 11 11 H 1.48508 * 109.46632 * 326.30494 * 8 6 4 12 12 N 1.46502 * 109.46966 * 119.99838 * 2 1 3 13 13 C 1.34773 * 120.00254 * 274.99861 * 12 2 1 14 14 O 1.21286 * 119.99853 * 0.02562 * 13 12 2 15 15 C 1.50697 * 119.99955 * 180.02562 * 13 12 2 16 16 C 1.53004 * 109.47123 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47046 * 305.00365 * 16 15 13 18 18 C 1.50693 * 109.47275 * 185.00082 * 16 15 13 19 19 C 1.38233 * 120.00575 * 283.48928 * 18 16 15 20 20 C 1.38229 * 120.00392 * 179.79017 * 19 18 16 21 21 C 1.38236 * 119.99871 * 0.43656 * 20 19 18 22 22 C 1.38229 * 119.99956 * 359.81097 * 21 20 19 23 23 C 1.38236 * 120.00289 * 359.97438 * 22 21 20 24 24 N 1.46501 * 109.47011 * 65.00181 * 16 15 13 25 25 C 1.47094 * 125.55918 * 50.15987 * 24 16 15 26 26 C 1.54088 * 103.77893 * 179.97438 * 25 24 16 27 27 O 1.45708 * 104.00809 * 0.02562 * 26 25 24 28 28 C 1.33773 * 109.47320 * 359.75267 * 27 26 25 29 29 O 1.21510 * 123.07404 * 180.24007 * 28 27 26 30 30 H 1.09005 * 109.47042 * 174.68982 * 1 2 3 31 31 H 1.09003 * 109.47349 * 54.68812 * 1 2 3 32 32 H 1.09002 * 109.47180 * 294.68281 * 1 2 3 33 33 H 0.96998 * 119.99973 * 179.97438 * 7 6 4 34 34 H 0.96997 * 119.99464 * 95.00032 * 12 2 1 35 35 H 1.08990 * 109.47361 * 300.00335 * 15 13 12 36 36 H 1.09000 * 109.46984 * 60.00241 * 15 13 12 37 37 H 1.08004 * 119.99286 * 359.97438 * 19 18 16 38 38 H 1.08001 * 119.99970 * 180.27540 * 20 19 18 39 39 H 1.08000 * 119.99901 * 179.83990 * 21 20 19 40 40 H 1.08001 * 119.99900 * 180.02562 * 22 21 20 41 41 H 1.07998 * 120.00296 * 179.97438 * 23 22 21 42 42 H 1.09001 * 110.56465 * 298.55552 * 25 24 16 43 43 H 1.09003 * 110.56384 * 61.40417 * 25 24 16 44 44 H 1.08998 * 110.52404 * 118.62822 * 26 25 24 45 45 H 1.08999 * 110.52242 * 241.23539 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1358 -1.7854 -1.2289 6 6 2.3597 0.0120 -2.3582 7 7 2.6912 -0.6134 -3.4666 8 14 2.3328 1.8793 -2.3118 9 1 3.6401 2.3811 -1.8177 10 1 2.0850 2.4049 -3.6784 11 1 1.2514 2.3362 -1.4022 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8582 1.1584 2.4117 15 6 2.6499 -0.7286 3.5874 16 6 2.7019 0.2547 4.7586 17 1 3.3033 1.1201 4.4800 18 6 3.3192 -0.4217 5.9553 19 6 2.5784 -1.3204 6.6999 20 6 3.1461 -1.9441 7.7951 21 6 4.4517 -1.6623 8.1512 22 6 5.1909 -0.7598 7.4097 23 6 4.6247 -0.1394 6.3118 24 7 1.3433 0.6906 5.0908 25 6 0.1911 -0.1960 5.3146 26 6 -0.9642 0.7750 5.6256 27 8 -0.3485 2.0932 5.5447 28 6 0.9487 1.9619 5.2454 29 8 1.6998 2.9090 5.1218 30 1 -0.3633 -1.0233 -0.0951 31 1 -0.3634 0.5940 -0.8386 32 1 -0.3634 0.4292 0.9338 33 1 2.9212 -0.1052 -4.2601 34 1 2.2490 -1.6317 1.1526 35 1 1.9778 -1.5508 3.8325 36 1 3.6492 -1.1203 3.3978 37 1 1.5570 -1.5375 6.4241 38 1 2.5687 -2.6496 8.3742 39 1 4.8944 -2.1477 9.0085 40 1 6.2111 -0.5400 7.6877 41 1 5.2020 0.5661 5.7328 42 1 -0.0264 -0.7751 4.4171 43 1 0.3750 -0.8562 6.1622 44 1 -1.7559 0.6774 4.8828 45 1 -1.3562 0.5945 6.6265 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728274419.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:59 Heat of formation + Delta-G solvation = -94.197235 kcal Electronic energy + Delta-G solvation = -29319.087444 eV Core-core repulsion = 25301.286401 eV Total energy + Delta-G solvation = -4017.801043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.68038 -40.78776 -40.03676 -38.25244 -37.24887 -36.47210 -34.39669 -33.58488 -31.98177 -31.78143 -30.67763 -29.97748 -27.35372 -26.19297 -24.69827 -23.47781 -22.87693 -22.76243 -21.40505 -21.05093 -19.33056 -18.65103 -18.26825 -18.02638 -17.73471 -17.36039 -17.16244 -16.28464 -16.11961 -15.87205 -15.70763 -15.56726 -15.09263 -14.92682 -14.79864 -14.65906 -14.56424 -14.23565 -14.19857 -13.65025 -13.52704 -13.39941 -13.11448 -13.06240 -12.99869 -12.82239 -12.58046 -12.43865 -12.10346 -11.91801 -11.83614 -11.75956 -11.57441 -11.25211 -10.87956 -10.73434 -9.86414 -9.80225 -9.78273 -9.69505 -8.42302 -6.46689 0.34999 0.51907 1.23789 1.29893 1.40344 1.45246 1.75310 1.82547 2.22883 2.42027 2.62613 2.90710 3.01132 3.32439 3.48962 3.59456 3.81597 3.88936 4.10461 4.14814 4.20384 4.29086 4.31223 4.44040 4.47644 4.54693 4.57411 4.67525 4.71349 4.72596 4.80406 4.82337 4.94003 5.05984 5.11486 5.18029 5.36199 5.38177 5.44089 5.57756 5.64742 5.69504 5.76912 6.10980 6.11528 6.38738 6.58918 6.93333 7.00883 7.19935 7.52650 8.72629 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.003625 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.499332 B = 7721.773716 C = 8631.341543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.234 3.766 3 H 0.021 0.979 4 C -0.522 4.522 5 H 0.063 0.937 6 C 0.038 3.962 7 N -0.927 5.927 8 Si 0.920 3.080 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.263 1.263 12 N -0.702 5.702 13 C 0.494 3.506 14 O -0.590 6.590 15 C -0.136 4.136 16 C 0.237 3.763 17 H 0.073 0.927 18 C -0.108 4.108 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.124 4.124 24 N -0.605 5.605 25 C 0.046 3.954 26 C 0.036 3.964 27 O -0.354 6.354 28 C 0.644 3.356 29 O -0.579 6.579 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.034 0.966 33 H 0.270 0.730 34 H 0.407 0.593 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.103 0.897 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.046 -9.413 26.554 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.130 3.870 3 H 0.039 0.961 4 C -0.561 4.561 5 H 0.081 0.919 6 C -0.163 4.163 7 N -0.566 5.566 8 Si 0.746 3.254 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.188 1.188 12 N -0.352 5.352 13 C 0.282 3.718 14 O -0.470 6.470 15 C -0.176 4.176 16 C 0.134 3.866 17 H 0.092 0.908 18 C -0.109 4.109 19 C -0.137 4.137 20 C -0.137 4.137 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.143 4.143 24 N -0.351 5.351 25 C -0.075 4.075 26 C -0.037 4.037 27 O -0.264 6.264 28 C 0.399 3.601 29 O -0.468 6.468 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.153 0.847 44 H 0.136 0.864 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.972 -7.885 26.326 27.642 hybrid contribution 0.439 0.884 -0.999 1.404 sum -2.533 -7.001 25.327 26.399 Atomic orbital electron populations 1.22055 0.97062 1.01287 0.99064 1.18833 0.91991 0.92820 0.83370 0.96114 1.21206 1.43991 0.94954 0.95905 0.91927 1.25501 0.94030 1.01577 0.95199 1.69960 1.47005 1.37445 1.02155 0.86166 0.79273 0.82413 0.77547 1.20460 1.20119 1.18810 1.46337 1.65349 1.14434 1.09080 1.21253 0.77744 0.87215 0.85622 1.90750 1.52443 1.18065 1.85790 1.22099 1.06280 0.99226 0.89986 1.19272 0.79632 0.96280 0.91382 0.90830 1.19959 0.94999 0.98841 0.97076 1.21600 1.00784 0.95735 0.95550 1.21514 0.95603 0.99714 0.96835 1.21559 0.94893 0.97445 0.99998 1.21379 1.00945 0.97047 0.94936 1.21194 0.94967 1.00092 0.98056 1.47815 1.10720 1.05109 1.71446 1.23505 0.83837 0.94606 1.05569 1.24745 0.95749 0.75857 1.07392 1.87213 1.21319 1.34049 1.83839 1.18565 0.81358 0.84434 0.75745 1.90944 1.54452 1.43282 1.58117 0.91833 0.94102 0.94645 0.92035 0.75717 0.84659 0.85278 0.83181 0.83041 0.83747 0.84514 0.86622 0.87917 0.84684 0.86414 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 9.47 71.98 0.68 -5.02 16 2 C 0.23 10.87 2.23 44.24 0.10 10.97 16 3 H 0.02 1.10 4.66 -2.39 -0.01 1.09 16 4 C -0.52 -27.70 9.04 25.60 0.23 -27.47 16 5 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 6 C 0.04 2.12 5.47 84.65 0.46 2.58 16 7 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 8 Si 0.92 45.88 27.06 68.60 1.86 47.74 16 9 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 11 H -0.26 -13.16 6.73 99.48 0.67 -12.49 16 12 N -0.70 -25.79 5.07 -446.09 -2.26 -28.05 16 13 C 0.49 17.23 7.66 87.66 0.67 17.90 16 14 O -0.59 -26.86 14.62 -3.05 -0.04 -26.90 16 15 C -0.14 -3.01 4.97 29.85 0.15 -2.86 16 16 C 0.24 6.03 2.12 44.24 0.09 6.12 16 17 H 0.07 2.52 7.22 -2.39 -0.02 2.51 16 18 C -0.11 -2.11 4.95 -19.87 -0.10 -2.21 16 19 C -0.12 -1.62 9.07 22.27 0.20 -1.41 16 20 C -0.12 -1.32 10.05 22.27 0.22 -1.10 16 21 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 22 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 23 C -0.12 -2.50 9.67 22.27 0.22 -2.28 16 24 N -0.61 -15.64 1.93 -931.54 -1.80 -17.44 16 25 C 0.05 0.64 6.15 86.63 0.53 1.17 16 26 C 0.04 0.51 8.23 72.35 0.60 1.11 16 27 O -0.35 -10.51 11.09 -47.33 -0.52 -11.03 16 28 C 0.64 23.03 8.38 129.91 1.09 24.12 16 29 O -0.58 -27.01 17.33 19.65 0.34 -26.67 16 30 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.41 12.51 8.59 -92.71 -0.80 11.72 16 35 H 0.14 1.91 7.30 -2.39 -0.02 1.90 16 36 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.15 1.23 4.22 -2.91 -0.01 1.22 16 38 H 0.15 0.79 8.06 -2.91 -0.02 0.76 16 39 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.12 2.43 8.01 -2.91 -0.02 2.40 16 42 H 0.10 1.23 7.62 -2.39 -0.02 1.21 16 43 H 0.14 0.81 4.97 -2.39 -0.01 0.80 16 44 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -86.16 371.53 3.66 -82.50 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.19 Total: 15.86 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 5.60 Total: 18.61 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -3.76 Total: -100.11 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -0.23 Total: -64.61 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.86 Total: 47.74 kcal Total: -86.16 3.66 -82.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728274419.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.695 kcal (2) G-P(sol) polarization free energy of solvation -86.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds