Wall clock time and date at job start Tue Mar 31 2020 18:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21298 * 120.00020 * 2 1 4 4 N 1.34771 * 120.00014 * 180.02562 * 2 1 3 5 5 C 1.47302 * 121.16354 * 5.42094 * 4 2 1 6 6 C 1.53928 * 107.36953 * 137.95535 * 5 4 2 7 7 H 1.09000 * 109.75840 * 298.67459 * 6 5 4 8 8 C 1.50696 * 109.64268 * 178.26183 * 6 5 4 9 9 O 1.21285 * 119.99801 * 252.19003 * 8 6 5 10 10 N 1.34774 * 120.00317 * 72.18144 * 8 6 5 11 11 C 1.46499 * 119.99946 * 175.71951 * 10 8 6 12 12 C 1.46500 * 119.99746 * 355.72842 * 10 8 6 13 13 H 1.08993 * 109.47395 * 5.08036 * 12 10 8 14 14 C 1.52995 * 109.46745 * 245.07596 * 12 10 8 15 15 C 1.50702 * 109.46956 * 125.07690 * 12 10 8 16 16 H 1.07996 * 120.00502 * 0.02562 * 15 12 10 17 17 C 1.37876 * 119.99598 * 179.97438 * 15 12 10 18 18 N 1.31507 * 120.00500 * 0.02562 * 17 15 12 19 19 Si 1.86809 * 119.99695 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.46922 * 90.00403 * 19 17 15 21 21 H 1.48504 * 109.46602 * 209.99926 * 19 17 15 22 22 H 1.48493 * 109.47173 * 330.00165 * 19 17 15 23 23 O 1.42951 * 108.68295 * 58.50120 * 6 5 4 24 24 C 1.35895 * 117.77642 * 310.40771 * 23 6 5 25 25 C 1.38718 * 119.66359 * 200.08759 * 24 23 6 26 26 C 1.38200 * 120.05248 * 180.23041 * 25 24 23 27 27 C 1.38278 * 120.29740 * 359.97438 * 26 25 24 28 28 C 1.38263 * 120.05850 * 359.94198 * 27 26 25 29 29 C 1.38576 * 119.87594 * 0.02607 * 28 27 26 30 30 H 1.09001 * 109.47266 * 264.45086 * 1 2 3 31 31 H 1.09004 * 109.47347 * 24.44682 * 1 2 3 32 32 H 1.09000 * 109.47431 * 144.44233 * 1 2 3 33 33 H 1.09007 * 109.83843 * 257.56692 * 5 4 2 34 34 H 1.09001 * 109.83487 * 18.52524 * 5 4 2 35 35 H 1.08997 * 109.46970 * 94.91037 * 11 10 8 36 36 H 1.09007 * 109.47071 * 214.90926 * 11 10 8 37 37 H 1.08997 * 109.47447 * 334.90593 * 11 10 8 38 38 H 1.09009 * 109.47002 * 180.02562 * 14 12 10 39 39 H 1.09005 * 109.47676 * 299.99664 * 14 12 10 40 40 H 1.09000 * 109.47160 * 60.00081 * 14 12 10 41 41 H 0.97003 * 120.00495 * 179.97438 * 18 17 15 42 42 H 1.07999 * 119.97066 * 0.22073 * 25 24 23 43 43 H 1.07995 * 119.84830 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.97105 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.05866 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4752 -2.4546 -0.1202 6 6 2.2891 -3.3369 -1.0838 7 1 2.3403 -2.8622 -2.0637 8 6 1.6330 -4.6875 -1.2107 9 8 2.1438 -5.6605 -0.6974 10 7 0.4784 -4.8143 -1.8943 11 6 -0.1105 -6.1402 -2.0977 12 6 -0.1875 -3.6263 -2.4341 13 1 0.4381 -2.7502 -2.2637 14 6 -1.5347 -3.4349 -1.7347 15 6 -0.4104 -3.8042 -3.9139 16 1 -0.0887 -4.7115 -4.4033 17 6 -1.0261 -2.8089 -4.6427 18 7 -1.4183 -1.7041 -4.0468 19 14 -1.3031 -3.0296 -6.4769 20 1 -2.6233 -3.6701 -6.7046 21 1 -1.2744 -1.7036 -7.1449 22 1 -0.2317 -3.8905 -7.0392 23 8 3.6091 -3.4929 -0.5576 24 6 4.2721 -2.3725 -0.1680 25 6 5.6542 -2.3980 -0.0523 26 6 6.3362 -1.2646 0.3479 27 6 5.6471 -0.1004 0.6342 28 6 4.2697 -0.0651 0.5200 29 6 3.5810 -1.1986 0.1186 30 1 -0.3634 -0.0994 1.0228 31 1 -0.3634 0.9355 -0.4253 32 1 -0.3634 -0.8360 -0.5976 33 1 1.4091 -2.9325 0.8573 34 1 0.4750 -2.2923 -0.5218 35 1 -0.8505 -6.3322 -1.3207 36 1 -0.5918 -6.1780 -3.0751 37 1 0.6724 -6.8970 -2.0489 38 1 -2.0304 -2.5512 -2.1366 39 1 -2.1604 -4.3111 -1.9052 40 1 -1.3735 -3.3063 -0.6644 41 1 -1.8512 -1.0037 -4.5597 42 1 6.1977 -3.3043 -0.2749 43 1 7.4122 -1.2882 0.4373 44 1 6.1854 0.7821 0.9469 45 1 3.7315 0.8442 0.7433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728873908.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:28 Heat of formation + Delta-G solvation = -51.026025 kcal Electronic energy + Delta-G solvation = -30233.075777 eV Core-core repulsion = 26217.146778 eV Total energy + Delta-G solvation = -4015.928999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45041 -39.54099 -38.81852 -37.20529 -35.96345 -35.30535 -32.85608 -31.49875 -30.92370 -29.63886 -29.45174 -28.03293 -26.43556 -25.54286 -24.47699 -23.16686 -21.83761 -21.37863 -19.55228 -18.87614 -18.15970 -17.54394 -17.04433 -16.64454 -16.05945 -15.84323 -15.65843 -15.24739 -15.02415 -14.70803 -14.44462 -14.18821 -13.91631 -13.68931 -13.35777 -13.19604 -13.13312 -12.66768 -12.45702 -12.34239 -12.12818 -11.91996 -11.80383 -11.60794 -11.51348 -11.36453 -11.21146 -11.08709 -11.00637 -10.87846 -10.50240 -10.35353 -10.16841 -9.65493 -9.49384 -9.21337 -8.72755 -8.39256 -7.92268 -7.74240 -6.37713 -4.46033 1.30735 1.48280 2.50825 2.63468 2.84753 3.04845 3.12307 3.20989 3.23814 3.85020 3.98521 4.18620 4.41515 4.47345 4.77352 4.93395 4.94472 4.97622 5.11349 5.17220 5.32508 5.38033 5.44290 5.48739 5.56649 5.61207 5.87880 5.97544 6.01628 6.07371 6.21652 6.24903 6.33564 6.40447 6.43093 6.49668 6.59986 6.62399 6.88806 6.91770 7.08309 7.19861 7.42340 7.49313 7.58976 7.85683 8.01869 8.12482 8.50502 8.68082 9.23336 10.67627 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.004611 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.473246 B = 6070.332991 C = 6968.835428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.524 3.476 3 O -0.526 6.526 4 N -0.554 5.554 5 C 0.070 3.930 6 C 0.066 3.934 7 H 0.110 0.890 8 C 0.520 3.480 9 O -0.542 6.542 10 N -0.584 5.584 11 C 0.093 3.907 12 C 0.245 3.755 13 H 0.049 0.951 14 C -0.156 4.156 15 C -0.535 4.535 16 H 0.066 0.934 17 C 0.070 3.930 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 O -0.286 6.286 24 C 0.099 3.901 25 C -0.128 4.128 26 C -0.109 4.109 27 C -0.135 4.135 28 C -0.114 4.114 29 C 0.079 3.921 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.040 0.960 40 H 0.013 0.987 41 H 0.267 0.733 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 1.762 8.111 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.316 3.684 3 O -0.403 6.403 4 N -0.279 5.279 5 C -0.053 4.053 6 C 0.005 3.995 7 H 0.128 0.872 8 C 0.305 3.695 9 O -0.421 6.421 10 N -0.316 5.316 11 C -0.049 4.049 12 C 0.145 3.855 13 H 0.066 0.934 14 C -0.214 4.214 15 C -0.573 4.573 16 H 0.084 0.916 17 C -0.133 4.133 18 N -0.524 5.524 19 Si 0.727 3.273 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.198 1.198 23 O -0.199 6.199 24 C 0.052 3.948 25 C -0.147 4.147 26 C -0.128 4.128 27 C -0.154 4.154 28 C -0.134 4.134 29 C -0.015 4.015 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.148 0.852 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.152 0.848 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.996 1.817 8.313 9.868 hybrid contribution -0.470 0.018 -1.213 1.301 sum 4.526 1.835 7.101 8.618 Atomic orbital electron populations 1.22044 0.89917 1.06833 1.04850 1.21052 0.91119 0.81834 0.74443 1.90541 1.70041 1.31004 1.48683 1.45846 1.04628 1.07424 1.70041 1.23013 0.98315 0.82807 1.01135 1.22660 0.82217 0.96221 0.98368 0.87238 1.19477 0.81665 0.88506 0.79875 1.90665 1.64197 1.39393 1.47813 1.48161 1.21633 1.10082 1.51726 1.21504 0.97997 0.83505 1.01917 1.19244 0.90597 0.81782 0.93895 0.93365 1.22218 0.99556 1.03852 0.95772 1.21260 1.40167 1.04021 0.91868 0.91574 1.24857 0.94640 0.94790 0.99029 1.69787 1.39621 1.06637 1.36349 0.86446 0.78779 0.77749 0.84279 1.20379 1.20969 1.19764 1.86095 1.27537 1.28732 1.77542 1.18687 0.91747 0.85276 0.99093 1.20394 0.90031 0.99899 1.04365 1.20900 0.99726 0.92229 0.99903 1.21022 0.93730 0.98205 1.02428 1.21730 0.94518 0.98614 0.98520 1.18075 0.82747 0.95704 1.04962 0.88597 0.88046 0.88308 0.89006 0.85229 0.93550 0.90039 0.91740 0.88293 0.94082 0.96795 0.92276 0.84796 0.85500 0.85694 0.82004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.69 36.00 0.35 -1.90 16 2 C 0.52 8.37 7.70 -10.99 -0.08 8.28 16 3 O -0.53 -9.49 13.97 5.54 0.08 -9.41 16 4 N -0.55 -9.06 3.01 -112.11 -0.34 -9.40 16 5 C 0.07 1.11 5.35 -3.12 -0.02 1.09 16 6 C 0.07 1.21 2.50 -27.40 -0.07 1.14 16 7 H 0.11 2.11 7.26 -51.93 -0.38 1.74 16 8 C 0.52 10.32 7.04 -10.99 -0.08 10.24 16 9 O -0.54 -12.02 16.09 -14.03 -0.23 -12.24 16 10 N -0.58 -11.27 2.75 -175.27 -0.48 -11.75 16 11 C 0.09 1.62 9.68 59.85 0.58 2.19 16 12 C 0.25 5.01 1.82 -69.08 -0.13 4.89 16 13 H 0.05 1.02 4.47 -51.93 -0.23 0.79 16 14 C -0.16 -2.95 8.64 37.16 0.32 -2.63 16 15 C -0.54 -12.43 8.01 -34.44 -0.28 -12.70 16 16 H 0.07 1.57 6.90 -52.49 -0.36 1.20 16 17 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -21.23 11.32 55.43 0.63 -20.60 16 19 Si 0.90 19.09 29.54 -169.99 -5.02 14.07 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 23 O -0.29 -5.40 9.53 -38.99 -0.37 -5.77 16 24 C 0.10 1.70 6.51 -39.05 -0.25 1.45 16 25 C -0.13 -1.85 9.97 -39.42 -0.39 -2.24 16 26 C -0.11 -1.34 10.03 -39.58 -0.40 -1.74 16 27 C -0.14 -1.76 10.05 -39.56 -0.40 -2.15 16 28 C -0.11 -1.78 8.94 -39.45 -0.35 -2.13 16 29 C 0.08 1.34 6.32 -83.37 -0.53 0.81 16 30 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.10 1.33 6.02 -51.93 -0.31 1.02 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.13 1.99 2.43 -51.93 -0.13 1.86 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.41 6.60 -51.93 -0.34 1.07 16 37 H 0.06 1.10 7.34 -51.93 -0.38 0.72 16 38 H 0.10 2.07 6.07 -51.92 -0.32 1.75 16 39 H 0.04 0.77 7.80 -51.93 -0.41 0.37 16 40 H 0.01 0.22 7.40 -51.93 -0.38 -0.17 16 41 H 0.27 6.23 8.31 -40.82 -0.34 5.89 16 42 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 45 H 0.16 2.64 5.16 -52.57 -0.27 2.37 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -28.30 357.58 -7.76 -36.06 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.60 Total: 7.50 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.82 Total: 6.16 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.19 Total: -41.75 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.52 Total: -27.43 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.30 -7.76 -36.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728873908.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.963 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds