Wall clock time and date at job start Tue Mar 31 2020 18:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21290 * 120.00487 * 2 1 4 4 N 1.34787 * 119.99806 * 179.97438 * 2 1 3 5 5 C 1.47295 * 121.16374 * 356.35509 * 4 2 1 6 6 C 1.53539 * 107.57300 * 138.03914 * 5 4 2 7 7 H 1.09007 * 109.68491 * 298.34823 * 6 5 4 8 8 C 1.50699 * 109.58032 * 178.01076 * 6 5 4 9 9 O 1.21279 * 119.99567 * 245.66720 * 8 6 5 10 10 N 1.34773 * 119.99967 * 65.67098 * 8 6 5 11 11 C 1.46500 * 120.00243 * 359.97438 * 10 8 6 12 12 C 1.46506 * 119.99625 * 179.97438 * 10 8 6 13 13 H 1.08998 * 109.47183 * 359.97438 * 12 10 8 14 14 C 1.52992 * 109.46971 * 120.00198 * 12 10 8 15 15 C 1.50701 * 109.46721 * 240.00143 * 12 10 8 16 16 H 1.08002 * 120.00341 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99819 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99910 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00209 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46844 * 269.99640 * 19 17 15 21 21 H 1.48499 * 109.46897 * 29.99749 * 19 17 15 22 22 H 1.48498 * 109.47293 * 149.99742 * 19 17 15 23 23 O 1.42950 * 108.81442 * 58.20618 * 6 5 4 24 24 C 1.35899 * 117.78226 * 310.58666 * 23 6 5 25 25 C 1.38710 * 119.66078 * 200.10959 * 24 23 6 26 26 C 1.38198 * 120.05456 * 180.16198 * 25 24 23 27 27 C 1.38282 * 120.29275 * 0.02562 * 26 25 24 28 28 C 1.38245 * 120.06225 * 359.93390 * 27 26 25 29 29 C 1.38582 * 119.87912 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47489 * 185.42684 * 1 2 3 31 31 H 1.09003 * 109.47576 * 305.42980 * 1 2 3 32 32 H 1.09003 * 109.46960 * 65.42273 * 1 2 3 33 33 H 1.09008 * 109.84163 * 18.52215 * 5 4 2 34 34 H 1.09001 * 109.83823 * 257.55523 * 5 4 2 35 35 H 1.08999 * 109.46888 * 269.99851 * 11 10 8 36 36 H 1.08997 * 109.46990 * 29.99671 * 11 10 8 37 37 H 1.08999 * 109.46757 * 150.00031 * 11 10 8 38 38 H 1.09008 * 109.47066 * 299.99468 * 14 12 10 39 39 H 1.08998 * 109.47581 * 59.99737 * 14 12 10 40 40 H 1.08998 * 109.47243 * 179.97438 * 14 12 10 41 41 H 0.96997 * 120.00038 * 180.02562 * 18 17 15 42 42 H 1.08004 * 119.97421 * 0.13183 * 25 24 23 43 43 H 1.07998 * 119.85304 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.96469 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.06235 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4726 -2.4563 0.0812 6 6 2.1483 -3.4191 -0.9056 7 1 2.0581 -3.0288 -1.9194 8 6 1.4879 -4.7712 -0.8244 9 8 2.1120 -5.7272 -0.4150 10 7 0.2039 -4.9182 -1.2066 11 6 -0.5501 -3.7633 -1.7007 12 6 -0.4378 -6.2328 -1.1281 13 1 0.2737 -6.9620 -0.7407 14 6 -1.6478 -6.1547 -0.1951 15 6 -0.8897 -6.6540 -2.5027 16 1 -0.7167 -6.0070 -3.3500 17 6 -1.5251 -7.8650 -2.6785 18 7 -1.7364 -8.6527 -1.6467 19 14 -2.0859 -8.3869 -4.3822 20 1 -3.4720 -7.9076 -4.6154 21 1 -1.1808 -7.7998 -5.4026 22 1 -2.0508 -9.8680 -4.4828 23 8 3.5301 -3.5391 -0.5597 24 6 4.2348 -2.3944 -0.3598 25 6 5.6194 -2.4181 -0.4388 26 6 6.3443 -1.2595 -0.2337 27 6 5.6955 -0.0721 0.0515 28 6 4.3158 -0.0386 0.1314 29 6 3.5840 -1.1974 -0.0743 30 1 -0.3634 -1.0230 0.0972 31 1 -0.3634 0.5957 0.8374 32 1 -0.3633 0.4274 -0.9346 33 1 0.4259 -2.3211 -0.1918 34 1 1.5432 -2.8544 1.0935 35 1 -1.0460 -3.2689 -0.8654 36 1 0.1320 -3.0638 -2.1838 37 1 -1.2972 -4.0981 -2.4203 38 1 -1.3209 -5.8501 0.7992 39 1 -2.3593 -5.4257 -0.5829 40 1 -2.1256 -7.1327 -0.1370 41 1 -2.1830 -9.5048 -1.7704 42 1 6.1315 -3.3429 -0.6603 43 1 7.4223 -1.2817 -0.2955 44 1 6.2673 0.8302 0.2113 45 1 3.8090 0.8889 0.3536 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728873910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:37 Heat of formation + Delta-G solvation = -43.436559 kcal Electronic energy + Delta-G solvation = -29487.921351 eV Core-core repulsion = 25472.321456 eV Total energy + Delta-G solvation = -4015.599895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69448 -39.67192 -38.98102 -37.37529 -35.88858 -35.39803 -33.17526 -31.67849 -31.15972 -29.95054 -29.24691 -27.93930 -26.55854 -25.34569 -25.01362 -23.44619 -22.10839 -21.09759 -19.79814 -18.85916 -18.35158 -17.79396 -17.18210 -16.67342 -16.31432 -15.94119 -15.78051 -15.55465 -15.19608 -14.73393 -14.47486 -14.39851 -14.08990 -13.92993 -13.51585 -13.45213 -13.16661 -12.69445 -12.66520 -12.59924 -12.38128 -12.03829 -11.93735 -11.79107 -11.60611 -11.56118 -11.19987 -11.07649 -10.92628 -10.83946 -10.43480 -10.37937 -10.27318 -9.69925 -9.34351 -9.15219 -8.58415 -8.53800 -7.96456 -7.85859 -6.18048 -4.26957 1.10796 1.32302 2.25633 2.29778 2.74987 2.98585 3.19860 3.28229 3.30631 3.68233 3.84291 4.05914 4.22900 4.30159 4.44800 4.66485 4.68911 4.79298 4.90639 4.98528 5.05082 5.13882 5.18397 5.26283 5.30051 5.37526 5.44400 5.50245 5.65557 5.70707 6.04030 6.12188 6.18476 6.29693 6.46208 6.59636 6.65352 6.74073 6.89485 6.91463 7.16228 7.29454 7.37438 7.58072 7.69860 7.87029 8.03654 8.26333 8.63208 8.80425 9.39919 10.87327 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.003292 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.512582 B = 8504.633775 C = 9366.539722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.519 3.481 3 O -0.524 6.524 4 N -0.553 5.553 5 C 0.066 3.934 6 C 0.062 3.938 7 H 0.100 0.900 8 C 0.514 3.486 9 O -0.517 6.517 10 N -0.585 5.585 11 C 0.072 3.928 12 C 0.260 3.740 13 H 0.066 0.934 14 C -0.147 4.147 15 C -0.531 4.531 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.274 1.274 22 H -0.285 1.285 23 O -0.280 6.280 24 C 0.101 3.899 25 C -0.127 4.127 26 C -0.105 4.105 27 C -0.136 4.136 28 C -0.119 4.119 29 C 0.071 3.929 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.012 0.988 39 H 0.031 0.969 40 H 0.096 0.904 41 H 0.265 0.735 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 17.303 3.186 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.310 3.690 3 O -0.401 6.401 4 N -0.278 5.278 5 C -0.056 4.056 6 C 0.001 3.999 7 H 0.117 0.883 8 C 0.297 3.703 9 O -0.392 6.392 10 N -0.318 5.318 11 C -0.072 4.072 12 C 0.161 3.839 13 H 0.084 0.916 14 C -0.205 4.205 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.199 1.199 22 H -0.210 1.210 23 O -0.193 6.193 24 C 0.053 3.947 25 C -0.146 4.146 26 C -0.124 4.124 27 C -0.155 4.155 28 C -0.138 4.138 29 C -0.023 4.023 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.031 0.969 39 H 0.050 0.950 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.144 0.856 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.955 16.951 3.471 18.299 hybrid contribution -0.575 -0.276 -1.039 1.219 sum 5.380 16.675 2.432 17.690 Atomic orbital electron populations 1.22065 0.90303 1.05285 1.06186 1.21005 0.90972 0.82001 0.74978 1.90501 1.69459 1.31138 1.48974 1.45845 1.04590 1.07228 1.70174 1.22954 0.98607 0.82227 1.01851 1.22683 0.81461 0.96522 0.99203 0.88250 1.19430 0.82833 0.88022 0.79976 1.90726 1.62751 1.40105 1.45638 1.48222 1.09816 1.12191 1.61556 1.21840 0.97500 0.88452 0.99399 1.19043 0.91331 0.77532 0.96039 0.91629 1.22099 0.99191 1.03601 0.95640 1.21277 1.38776 1.03911 0.92970 0.92107 1.24886 0.95499 0.96069 0.97188 1.69867 1.41847 1.11029 1.29579 0.86472 0.78887 0.77946 0.83971 1.20554 1.19882 1.21027 1.86185 1.21050 1.27471 1.84587 1.18738 0.91832 0.84278 0.99841 1.20450 0.90066 0.99821 1.04308 1.20962 0.99828 0.91883 0.99683 1.21071 0.93975 0.98123 1.02335 1.22007 0.93982 0.98818 0.98996 1.18070 0.82381 0.95155 1.06660 0.89642 0.87879 0.87732 0.85865 0.88410 0.93384 0.92920 0.89026 0.96866 0.94994 0.88600 0.92518 0.84574 0.85362 0.85612 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 10.08 36.00 0.36 -0.89 16 2 C 0.52 5.96 7.76 -10.98 -0.09 5.87 16 3 O -0.52 -7.37 13.81 5.55 0.08 -7.29 16 4 N -0.55 -6.96 3.01 -112.34 -0.34 -7.29 16 5 C 0.07 0.80 5.43 -3.33 -0.02 0.78 16 6 C 0.06 0.96 2.54 -27.60 -0.07 0.89 16 7 H 0.10 1.38 7.12 -51.93 -0.37 1.01 16 8 C 0.51 10.03 7.10 -10.99 -0.08 9.96 16 9 O -0.52 -12.54 15.84 -14.24 -0.23 -12.77 16 10 N -0.58 -11.12 2.75 -175.27 -0.48 -11.60 16 11 C 0.07 0.98 7.94 59.85 0.48 1.46 16 12 C 0.26 6.14 2.64 -69.08 -0.18 5.96 16 13 H 0.07 1.84 6.90 -51.93 -0.36 1.48 16 14 C -0.15 -3.20 8.97 37.15 0.33 -2.87 16 15 C -0.53 -13.44 7.99 -34.44 -0.28 -13.71 16 16 H 0.06 1.50 7.33 -52.49 -0.38 1.12 16 17 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -23.96 11.32 55.43 0.63 -23.33 16 19 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 O -0.28 -4.83 9.51 -39.22 -0.37 -5.21 16 24 C 0.10 1.52 6.52 -39.05 -0.25 1.27 16 25 C -0.13 -1.66 9.97 -39.42 -0.39 -2.06 16 26 C -0.10 -1.14 10.03 -39.58 -0.40 -1.54 16 27 C -0.14 -1.53 10.05 -39.56 -0.40 -1.93 16 28 C -0.12 -1.58 9.02 -39.45 -0.36 -1.93 16 29 C 0.07 1.01 6.34 -83.37 -0.53 0.48 16 30 H 0.08 0.49 5.30 -51.93 -0.28 0.22 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.14 2.63 -51.92 -0.14 1.01 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 0.51 7.08 -51.93 -0.37 0.15 16 36 H 0.05 0.58 6.08 -51.93 -0.32 0.26 16 37 H 0.09 1.37 7.02 -51.93 -0.36 1.00 16 38 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 39 H 0.03 0.62 7.67 -51.93 -0.40 0.23 16 40 H 0.10 2.35 6.07 -51.93 -0.32 2.03 16 41 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.17 2.35 4.92 -53.50 -0.26 2.08 16 LS Contribution 357.95 15.07 5.39 5.39 Total: -1.00 -32.61 357.95 -7.94 -40.56 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.64 Total: 3.07 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.96 Total: 3.36 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: -0.19 Total: -42.23 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.52 Total: -25.27 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.61 -7.94 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728873910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.882 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds