Wall clock time and date at job start Tue Mar 31 2020 18:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21290 * 120.00487 * 2 1 4 4 N 1.34787 * 119.99806 * 179.97438 * 2 1 3 5 5 C 1.47295 * 121.16374 * 356.35509 * 4 2 1 6 6 C 1.53539 * 107.57300 * 138.03914 * 5 4 2 7 7 H 1.09007 * 109.68491 * 298.34823 * 6 5 4 8 8 C 1.50699 * 109.58032 * 178.01076 * 6 5 4 9 9 O 1.21279 * 119.99567 * 245.66720 * 8 6 5 10 10 N 1.34773 * 119.99967 * 65.67098 * 8 6 5 11 11 C 1.46500 * 120.00243 * 359.97438 * 10 8 6 12 12 C 1.46506 * 119.99625 * 179.97438 * 10 8 6 13 13 H 1.08998 * 109.47183 * 359.97438 * 12 10 8 14 14 C 1.52992 * 109.46971 * 120.00198 * 12 10 8 15 15 C 1.50701 * 109.46721 * 240.00143 * 12 10 8 16 16 H 1.08002 * 120.00341 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99819 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99910 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00209 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46844 * 269.99640 * 19 17 15 21 21 H 1.48499 * 109.46897 * 29.99749 * 19 17 15 22 22 H 1.48498 * 109.47293 * 149.99742 * 19 17 15 23 23 O 1.42950 * 108.81442 * 58.20618 * 6 5 4 24 24 C 1.35899 * 117.78226 * 310.58666 * 23 6 5 25 25 C 1.38710 * 119.66078 * 200.10959 * 24 23 6 26 26 C 1.38198 * 120.05456 * 180.16198 * 25 24 23 27 27 C 1.38282 * 120.29275 * 0.02562 * 26 25 24 28 28 C 1.38245 * 120.06225 * 359.93390 * 27 26 25 29 29 C 1.38582 * 119.87912 * 0.02562 * 28 27 26 30 30 H 1.08996 * 109.47489 * 185.42684 * 1 2 3 31 31 H 1.09003 * 109.47576 * 305.42980 * 1 2 3 32 32 H 1.09003 * 109.46960 * 65.42273 * 1 2 3 33 33 H 1.09008 * 109.84163 * 18.52215 * 5 4 2 34 34 H 1.09001 * 109.83823 * 257.55523 * 5 4 2 35 35 H 1.08999 * 109.46888 * 269.99851 * 11 10 8 36 36 H 1.08997 * 109.46990 * 29.99671 * 11 10 8 37 37 H 1.08999 * 109.46757 * 150.00031 * 11 10 8 38 38 H 1.09008 * 109.47066 * 299.99468 * 14 12 10 39 39 H 1.08998 * 109.47581 * 59.99737 * 14 12 10 40 40 H 1.08998 * 109.47243 * 179.97438 * 14 12 10 41 41 H 0.96997 * 120.00038 * 180.02562 * 18 17 15 42 42 H 1.08004 * 119.97421 * 0.13183 * 25 24 23 43 43 H 1.07998 * 119.85304 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.96469 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.06235 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.4726 -2.4563 0.0812 6 6 2.1483 -3.4191 -0.9056 7 1 2.0581 -3.0288 -1.9194 8 6 1.4879 -4.7712 -0.8244 9 8 2.1120 -5.7272 -0.4150 10 7 0.2039 -4.9182 -1.2066 11 6 -0.5501 -3.7633 -1.7007 12 6 -0.4378 -6.2328 -1.1281 13 1 0.2737 -6.9620 -0.7407 14 6 -1.6478 -6.1547 -0.1951 15 6 -0.8897 -6.6540 -2.5027 16 1 -0.7167 -6.0070 -3.3500 17 6 -1.5251 -7.8650 -2.6785 18 7 -1.7364 -8.6527 -1.6467 19 14 -2.0859 -8.3869 -4.3822 20 1 -3.4720 -7.9076 -4.6154 21 1 -1.1808 -7.7998 -5.4026 22 1 -2.0508 -9.8680 -4.4828 23 8 3.5301 -3.5391 -0.5597 24 6 4.2348 -2.3944 -0.3598 25 6 5.6194 -2.4181 -0.4388 26 6 6.3443 -1.2595 -0.2337 27 6 5.6955 -0.0721 0.0515 28 6 4.3158 -0.0386 0.1314 29 6 3.5840 -1.1974 -0.0743 30 1 -0.3634 -1.0230 0.0972 31 1 -0.3634 0.5957 0.8374 32 1 -0.3633 0.4274 -0.9346 33 1 0.4259 -2.3211 -0.1918 34 1 1.5432 -2.8544 1.0935 35 1 -1.0460 -3.2689 -0.8654 36 1 0.1320 -3.0638 -2.1838 37 1 -1.2972 -4.0981 -2.4203 38 1 -1.3209 -5.8501 0.7992 39 1 -2.3593 -5.4257 -0.5829 40 1 -2.1256 -7.1327 -0.1370 41 1 -2.1830 -9.5048 -1.7704 42 1 6.1315 -3.3429 -0.6603 43 1 7.4223 -1.2817 -0.2955 44 1 6.2673 0.8302 0.2113 45 1 3.8090 0.8889 0.3536 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728873910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:36 Heat of formation + Delta-G solvation = -63.573673 kcal Electronic energy + Delta-G solvation = -29488.794562 eV Core-core repulsion = 25472.321456 eV Total energy + Delta-G solvation = -4016.473106 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.73155 -40.96535 -40.11620 -38.47697 -37.28099 -36.69515 -34.92943 -32.82765 -32.19082 -31.12915 -30.46708 -28.91083 -27.82901 -27.27882 -26.16032 -24.41478 -23.41514 -22.40109 -20.73694 -20.32352 -19.48964 -18.80915 -18.53831 -18.21846 -17.51253 -17.12890 -17.06094 -16.84339 -16.40218 -16.01282 -15.80704 -15.52282 -15.20416 -14.95954 -14.76765 -14.49900 -14.32428 -14.23614 -13.86771 -13.58357 -13.46253 -13.12240 -13.06605 -12.93900 -12.92231 -12.78709 -12.65751 -12.56603 -12.51130 -12.20335 -12.15223 -12.12391 -11.39860 -11.18680 -10.85204 -10.55623 -10.47056 -9.58199 -9.45144 -8.96522 -8.14522 -6.30636 0.16099 0.32532 1.27535 1.40578 1.42804 1.44841 1.51042 1.56088 1.60580 2.39374 2.55901 2.75825 3.10994 3.14737 3.22872 3.36470 3.58869 3.74469 3.76883 4.10472 4.22437 4.25715 4.30439 4.38082 4.41281 4.52482 4.62292 4.65712 4.73309 4.79785 4.93844 4.98616 5.02845 5.06738 5.12861 5.25252 5.38858 5.48811 5.52046 5.53724 5.66126 5.78567 6.02796 6.03759 6.15995 6.24976 6.64131 6.76652 6.82546 7.16796 7.41746 8.89853 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.003292 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.512582 B = 8504.633775 C = 9366.539722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.514 3.486 3 O -0.553 6.553 4 N -0.555 5.555 5 C 0.077 3.923 6 C 0.071 3.929 7 H 0.117 0.883 8 C 0.509 3.491 9 O -0.579 6.579 10 N -0.585 5.585 11 C 0.060 3.940 12 C 0.263 3.737 13 H 0.008 0.992 14 C -0.132 4.132 15 C -0.539 4.539 16 H 0.065 0.935 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.962 3.038 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.290 1.290 23 O -0.312 6.312 24 C 0.071 3.929 25 C -0.138 4.138 26 C -0.097 4.097 27 C -0.129 4.129 28 C -0.133 4.133 29 C 0.057 3.943 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.025 0.975 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.264 0.736 42 H 0.139 0.861 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.720 20.211 2.379 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.307 3.693 3 O -0.432 6.432 4 N -0.280 5.280 5 C -0.045 4.045 6 C 0.011 3.989 7 H 0.134 0.866 8 C 0.295 3.705 9 O -0.459 6.459 10 N -0.316 5.316 11 C -0.082 4.082 12 C 0.162 3.838 13 H 0.026 0.974 14 C -0.191 4.191 15 C -0.578 4.578 16 H 0.083 0.917 17 C -0.183 4.183 18 N -0.555 5.555 19 Si 0.788 3.212 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.216 1.216 23 O -0.226 6.226 24 C 0.024 3.976 25 C -0.157 4.157 26 C -0.116 4.116 27 C -0.147 4.147 28 C -0.152 4.152 29 C -0.037 4.037 30 H 0.119 0.881 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.174 0.826 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.157 0.843 43 H 0.180 0.820 44 H 0.173 0.827 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.193 19.919 2.650 20.755 hybrid contribution -0.236 -1.127 -0.765 1.383 sum 4.957 18.792 1.885 19.526 Atomic orbital electron populations 1.22172 0.86386 1.06780 1.07839 1.21901 0.92675 0.81011 0.73672 1.90488 1.70480 1.31971 1.50267 1.45980 1.04058 1.07671 1.70311 1.22918 0.99669 0.81368 1.00571 1.22535 0.81155 0.94145 1.01088 0.86562 1.20123 0.82630 0.89108 0.78680 1.90690 1.64217 1.42589 1.48417 1.48132 1.10074 1.12194 1.61189 1.22245 0.97796 0.87110 1.01031 1.18625 0.90671 0.78948 0.95556 0.97358 1.21874 0.98537 1.02665 0.96031 1.21575 1.38250 1.04139 0.93797 0.91707 1.25685 0.95806 0.96237 1.00528 1.70016 1.42673 1.11312 1.31472 0.85492 0.78982 0.77035 0.79719 1.19052 1.19678 1.21593 1.86125 1.21952 1.29175 1.85333 1.19017 0.92519 0.84093 1.01960 1.20749 0.89714 1.00956 1.04301 1.21321 1.01389 0.90767 0.98077 1.21462 0.93434 0.99356 1.00471 1.22123 0.95016 0.98302 0.99765 1.18274 0.83562 0.95064 1.06785 0.88064 0.86386 0.85816 0.82633 0.89071 0.89314 0.89695 0.89858 0.95605 0.92579 0.91543 0.92656 0.84342 0.81980 0.82674 0.81812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.08 71.23 0.72 -1.00 16 2 C 0.51 10.58 7.76 87.65 0.68 11.26 16 3 O -0.55 -14.70 13.81 -3.06 -0.04 -14.75 16 4 N -0.56 -13.04 3.01 -627.72 -1.89 -14.93 16 5 C 0.08 1.71 5.43 86.41 0.47 2.18 16 6 C 0.07 2.15 2.54 30.03 0.08 2.23 16 7 H 0.12 3.05 7.12 -2.38 -0.02 3.03 16 8 C 0.51 20.24 7.10 87.66 0.62 20.86 16 9 O -0.58 -29.83 15.84 15.90 0.25 -29.58 16 10 N -0.58 -21.96 2.75 -826.81 -2.28 -24.24 16 11 C 0.06 1.45 7.94 127.77 1.01 2.46 16 12 C 0.26 12.72 2.64 44.24 0.12 12.84 16 13 H 0.01 0.50 6.90 -2.39 -0.02 0.49 16 14 C -0.13 -5.77 8.97 71.98 0.65 -5.12 16 15 C -0.54 -27.50 7.99 25.60 0.20 -27.29 16 16 H 0.06 3.17 7.33 -2.91 -0.02 3.15 16 17 C 0.02 0.91 5.30 84.65 0.45 1.36 16 18 N -0.92 -50.87 11.32 21.45 0.24 -50.63 16 19 Si 0.96 41.31 29.54 68.60 2.03 43.34 16 20 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 O -0.31 -11.05 9.51 -73.48 -0.70 -11.75 16 24 C 0.07 2.15 6.52 22.62 0.15 2.29 16 25 C -0.14 -3.56 9.97 22.37 0.22 -3.34 16 26 C -0.10 -1.92 10.03 22.27 0.22 -1.69 16 27 C -0.13 -2.61 10.05 22.28 0.22 -2.38 16 28 C -0.13 -3.37 9.02 22.35 0.20 -3.17 16 29 C 0.06 1.59 6.34 38.06 0.24 1.83 16 30 H 0.10 0.66 5.30 -2.39 -0.01 0.64 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.16 2.28 2.63 -2.38 -0.01 2.27 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 1.46 7.08 -2.39 -0.02 1.44 16 36 H 0.08 1.53 6.08 -2.39 -0.01 1.51 16 37 H 0.08 2.23 7.02 -2.39 -0.02 2.22 16 38 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.06 2.12 7.67 -2.39 -0.02 2.10 16 40 H 0.07 3.32 6.07 -2.39 -0.01 3.30 16 41 H 0.26 13.99 8.31 -92.71 -0.77 13.21 16 42 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 43 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.17 4.39 4.92 -19.02 -0.09 4.30 16 Total: -1.00 -76.73 357.95 4.82 -71.91 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.95 Total: 17.31 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 6.26 Total: 13.31 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -3.92 Total: -89.80 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -0.49 Total: -56.08 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -76.73 4.82 -71.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728873910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.332 kcal (2) G-P(sol) polarization free energy of solvation -76.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds