Wall clock time and date at job start Tue Mar 31 2020 17:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.64569 * 2 1 4 4 C 1.55160 * 110.71498 * 236.85800 * 2 1 3 5 5 C 1.54915 * 101.58033 * 206.13645 * 4 2 1 6 6 H 1.08997 * 110.36353 * 278.17405 * 5 4 2 7 7 C 1.52991 * 110.36636 * 155.85120 * 5 4 2 8 8 N 1.47428 * 104.83184 * 37.01009 * 5 4 2 9 9 C 1.34770 * 125.64976 * 155.83666 * 8 5 4 10 10 O 1.21360 * 119.99704 * 359.97438 * 9 8 5 11 11 C 1.49350 * 120.00332 * 180.02562 * 9 8 5 12 12 O 1.21380 * 119.99666 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99949 * 179.97438 * 11 9 8 14 14 C 1.39727 * 119.99396 * 175.48967 * 13 11 9 15 15 C 1.39024 * 120.04051 * 214.85932 * 14 13 11 16 16 C 1.38134 * 120.06276 * 179.72467 * 15 14 13 17 17 C 1.38184 * 120.14294 * 0.55558 * 16 15 14 18 18 C 1.38920 * 120.08111 * 359.72594 * 17 16 15 19 19 O 1.35752 * 120.02899 * 180.02562 * 18 17 16 20 20 C 1.34834 * 117.00068 * 5.31831 * 19 18 17 21 21 H 1.08003 * 119.99912 * 354.96538 * 20 19 18 22 22 C 1.38656 * 120.00060 * 174.95792 * 20 19 18 23 23 N 1.31562 * 119.99483 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47361 * 60.00766 * 24 22 20 26 26 H 1.48503 * 109.47334 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47246 * 300.00615 * 24 22 20 28 28 C 1.38755 * 119.93981 * 359.97438 * 18 17 16 29 29 C 1.47323 * 108.73656 * 335.71853 * 8 5 4 30 30 H 1.08996 * 109.47568 * 180.69831 * 1 2 3 31 31 H 1.09004 * 109.47193 * 60.69491 * 1 2 3 32 32 H 1.09001 * 109.46923 * 300.70223 * 1 2 3 33 33 H 1.08994 * 111.00697 * 324.20799 * 4 2 1 34 34 H 1.08997 * 111.00376 * 88.02854 * 4 2 1 35 35 H 1.09003 * 109.47315 * 60.00083 * 7 5 4 36 36 H 1.09003 * 109.47068 * 179.97438 * 7 5 4 37 37 H 1.09004 * 109.47457 * 299.99655 * 7 5 4 38 38 H 0.96997 * 120.00449 * 355.49890 * 13 11 9 39 39 H 1.08001 * 119.96722 * 0.02562 * 15 14 13 40 40 H 1.08004 * 119.93259 * 180.28005 * 16 15 14 41 41 H 1.08003 * 119.95432 * 179.70034 * 17 16 15 42 42 H 0.97008 * 119.99552 * 179.97438 * 23 22 20 43 43 H 1.08001 * 120.07240 * 179.97438 * 28 18 17 44 44 H 1.08999 * 110.06339 * 241.86984 * 29 8 5 45 45 H 1.08999 * 109.85263 * 120.61030 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0788 -0.7934 -1.2152 5 6 3.4632 -1.2488 -0.6897 6 1 4.1930 -0.4467 -0.7993 7 6 3.9301 -2.5007 -1.4350 8 7 3.2445 -1.5521 0.7363 9 6 3.9914 -2.3873 1.4853 10 8 4.9370 -2.9647 0.9901 11 6 3.6546 -2.6032 2.9242 12 8 2.7085 -2.0261 3.4192 13 7 4.4013 -3.4388 3.6730 14 6 4.1452 -3.5690 5.0404 15 6 5.1946 -3.7762 5.9284 16 6 4.9425 -3.8993 7.2810 17 6 3.6462 -3.8285 7.7545 18 6 2.5925 -3.6274 6.8718 19 8 1.3195 -3.5575 7.3381 20 6 1.1557 -3.5801 8.6763 21 1 2.0078 -3.7329 9.3221 22 6 -0.1066 -3.4071 9.2233 23 7 -1.1445 -3.2213 8.4365 24 14 -0.3336 -3.4392 11.0771 25 1 0.4758 -2.3575 11.6937 26 1 -1.7674 -3.2326 11.4039 27 1 0.1103 -4.7533 11.6075 28 6 2.8424 -3.4971 5.5132 29 6 2.0760 -0.7893 1.2086 30 1 -0.3634 -1.0275 0.0125 31 1 -0.3634 0.5030 -0.8962 32 1 -0.3633 0.5247 0.8836 33 1 1.4451 -1.6511 -1.4403 34 1 2.1843 -0.1485 -2.0875 35 1 4.0089 -2.2815 -2.4998 36 1 4.9044 -2.8077 -1.0546 37 1 3.2101 -3.3046 -1.2817 38 1 5.1165 -3.9497 3.2627 39 1 6.2084 -3.8361 5.5609 40 1 5.7598 -4.0557 7.9695 41 1 3.4521 -3.9299 8.8120 42 1 -2.0277 -3.1006 8.8191 43 1 2.0248 -3.3412 4.8250 44 1 2.3741 -0.0992 1.9979 45 1 1.3129 -1.4732 1.5801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741098864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:25 Heat of formation + Delta-G solvation = -59.060508 kcal Electronic energy + Delta-G solvation = -28252.966657 eV Core-core repulsion = 24236.689256 eV Total energy + Delta-G solvation = -4016.277400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07381 -39.69786 -38.57489 -37.80162 -36.59112 -34.25413 -33.18339 -32.26313 -32.02817 -29.64288 -28.64017 -27.36926 -26.14025 -25.40588 -24.74497 -22.52484 -21.63862 -20.87168 -20.73282 -19.52454 -18.31398 -17.68255 -17.26396 -16.98049 -16.31633 -15.67340 -15.31279 -15.09428 -14.70117 -14.63129 -14.35176 -14.22899 -13.93719 -13.62629 -13.52190 -13.38819 -13.10492 -12.86186 -12.80709 -12.53173 -12.42228 -12.09678 -11.94171 -11.79481 -11.58006 -11.51566 -11.12627 -11.04329 -11.01121 -10.98276 -10.82521 -10.67607 -10.48835 -9.82837 -9.53250 -9.13589 -8.93805 -8.82602 -7.78020 -7.22385 -6.43583 -4.02821 1.30812 2.07614 2.29021 2.33715 3.13752 3.14734 3.17887 3.26366 3.41626 3.97021 4.14907 4.22408 4.44851 4.49029 4.57741 4.88711 4.97050 5.03038 5.10538 5.21222 5.29401 5.31621 5.38211 5.52446 5.56519 5.59870 5.63269 5.77430 5.79845 5.83105 5.88866 5.93096 6.04692 6.06153 6.15038 6.23155 6.32290 6.57557 6.73185 6.97948 7.02511 7.08011 7.31652 7.39215 7.44664 7.68356 7.78056 8.00749 8.11250 9.01221 9.71421 10.74099 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002901 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.489488 B = 9650.025095 C =11376.257438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.132 3.868 6 H 0.081 0.919 7 C -0.165 4.165 8 N -0.588 5.588 9 C 0.527 3.473 10 O -0.523 6.523 11 C 0.499 3.501 12 O -0.485 6.485 13 N -0.638 5.638 14 C 0.169 3.831 15 C -0.230 4.230 16 C -0.058 4.058 17 C -0.242 4.242 18 C 0.166 3.834 19 O -0.172 6.172 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.185 4.185 29 C 0.107 3.893 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.417 0.583 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.271 0.729 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.953 4.566 -17.411 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.104 0.896 4 C -0.164 4.164 5 C 0.030 3.970 6 H 0.098 0.902 7 C -0.222 4.222 8 N -0.323 5.323 9 C 0.311 3.689 10 O -0.399 6.399 11 C 0.280 3.720 12 O -0.358 6.358 13 N -0.284 5.284 14 C 0.076 3.924 15 C -0.251 4.251 16 C -0.077 4.077 17 C -0.262 4.262 18 C 0.111 3.889 19 O -0.075 6.075 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.206 4.206 29 C -0.015 4.015 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.129 0.871 40 H 0.132 0.868 41 H 0.147 0.853 42 H 0.080 0.920 43 H 0.152 0.848 44 H 0.100 0.900 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.320 4.704 -17.398 19.453 hybrid contribution 0.293 -0.204 0.835 0.908 sum 7.613 4.501 -16.563 18.777 Atomic orbital electron populations 1.21754 0.93386 1.02570 1.02316 1.22297 0.96871 0.99390 0.94127 0.89634 1.22987 0.95117 1.00553 0.97766 1.22049 0.97496 0.98136 0.79302 0.90153 1.22162 1.03913 0.96581 0.99553 1.48412 1.30001 1.42923 1.10955 1.19752 0.82684 0.79733 0.86772 1.90699 1.28330 1.47957 1.72946 1.20076 0.83927 0.80843 0.87164 1.90846 1.26182 1.46404 1.72375 1.42989 1.35623 1.42256 1.07562 1.17178 0.93302 1.01010 0.80901 1.20305 0.96611 1.15042 0.93101 1.20517 0.95928 0.97136 0.94086 1.21217 0.92504 1.11751 1.00698 1.19098 0.85673 0.92056 0.92034 1.83987 1.20167 1.78448 1.24937 1.21304 0.95276 1.51494 0.78810 0.89009 1.25300 0.94324 0.96393 1.00465 1.70047 0.99427 1.44550 1.35449 0.85777 0.77903 0.79151 0.80568 1.19476 1.20284 1.19489 1.20143 0.95443 1.10930 0.94081 1.22432 0.87364 0.95304 0.96448 0.92141 0.92171 0.91811 0.90145 0.89641 0.91799 0.89651 0.92415 0.74595 0.87100 0.86835 0.85330 0.91956 0.84825 0.90044 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.14 37.16 0.34 -0.74 16 2 C -0.11 -0.87 3.54 -88.78 -0.31 -1.19 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -0.91 5.95 -24.58 -0.15 -1.05 16 5 C 0.13 1.23 3.77 -66.42 -0.25 0.98 16 6 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.16 -1.54 8.59 37.15 0.32 -1.22 16 8 N -0.59 -7.16 3.25 -163.35 -0.53 -7.69 16 9 C 0.53 7.58 7.69 -11.64 -0.09 7.49 16 10 O -0.52 -7.81 14.20 5.49 0.08 -7.73 16 11 C 0.50 8.22 7.69 -11.63 -0.09 8.13 16 12 O -0.49 -9.27 11.56 5.47 0.06 -9.20 16 13 N -0.64 -10.17 5.32 -10.31 -0.05 -10.23 16 14 C 0.17 3.20 6.29 -83.77 -0.53 2.67 16 15 C -0.23 -3.98 9.96 -39.33 -0.39 -4.37 16 16 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 17 C -0.24 -5.27 9.17 -39.35 -0.36 -5.63 16 18 C 0.17 4.13 6.64 -39.14 -0.26 3.87 16 19 O -0.17 -5.02 9.76 0.03 0.00 -5.02 16 20 C -0.39 -11.05 9.49 30.89 0.29 -10.75 16 21 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 23 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 24 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 28 C -0.18 -4.19 8.64 -39.19 -0.34 -4.53 16 29 C 0.11 1.22 5.10 -2.90 -0.01 1.21 16 30 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.59 7.96 -51.93 -0.41 0.18 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.97 6.09 -51.93 -0.32 0.65 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.42 5.52 8.30 -40.82 -0.34 5.18 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 41 H 0.13 2.76 5.63 -52.48 -0.30 2.47 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.13 3.20 6.23 -52.49 -0.33 2.87 16 44 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 45 H 0.08 1.10 7.23 -51.93 -0.38 0.73 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -32.59 369.69 -7.56 -40.15 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.10 Total: 8.87 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -2.32 Total: -5.57 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.17 Total: -42.58 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.14 Total: -21.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.59 -7.56 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741098864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.908 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds