Wall clock time and date at job start Tue Mar 31 2020 17:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.64569 * 2 1 4 4 C 1.55160 * 110.71498 * 236.85800 * 2 1 3 5 5 C 1.54915 * 101.58033 * 206.13645 * 4 2 1 6 6 H 1.08997 * 110.36353 * 278.17405 * 5 4 2 7 7 C 1.52991 * 110.36636 * 155.85120 * 5 4 2 8 8 N 1.47428 * 104.83184 * 37.01009 * 5 4 2 9 9 C 1.34770 * 125.64976 * 155.83666 * 8 5 4 10 10 O 1.21360 * 119.99704 * 359.97438 * 9 8 5 11 11 C 1.49350 * 120.00332 * 180.02562 * 9 8 5 12 12 O 1.21380 * 119.99666 * 359.97438 * 11 9 8 13 13 N 1.34778 * 119.99949 * 179.97438 * 11 9 8 14 14 C 1.39727 * 119.99396 * 175.48967 * 13 11 9 15 15 C 1.39024 * 120.04051 * 214.85932 * 14 13 11 16 16 C 1.38134 * 120.06276 * 179.72467 * 15 14 13 17 17 C 1.38184 * 120.14294 * 0.55558 * 16 15 14 18 18 C 1.38920 * 120.08111 * 359.72594 * 17 16 15 19 19 O 1.35752 * 120.02899 * 180.02562 * 18 17 16 20 20 C 1.34834 * 117.00068 * 5.31831 * 19 18 17 21 21 H 1.08003 * 119.99912 * 354.96538 * 20 19 18 22 22 C 1.38656 * 120.00060 * 174.95792 * 20 19 18 23 23 N 1.31562 * 119.99483 * 0.02562 * 22 20 19 24 24 Si 1.86790 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47361 * 60.00766 * 24 22 20 26 26 H 1.48503 * 109.47334 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47246 * 300.00615 * 24 22 20 28 28 C 1.38755 * 119.93981 * 359.97438 * 18 17 16 29 29 C 1.47323 * 108.73656 * 335.71853 * 8 5 4 30 30 H 1.08996 * 109.47568 * 180.69831 * 1 2 3 31 31 H 1.09004 * 109.47193 * 60.69491 * 1 2 3 32 32 H 1.09001 * 109.46923 * 300.70223 * 1 2 3 33 33 H 1.08994 * 111.00697 * 324.20799 * 4 2 1 34 34 H 1.08997 * 111.00376 * 88.02854 * 4 2 1 35 35 H 1.09003 * 109.47315 * 60.00083 * 7 5 4 36 36 H 1.09003 * 109.47068 * 179.97438 * 7 5 4 37 37 H 1.09004 * 109.47457 * 299.99655 * 7 5 4 38 38 H 0.96997 * 120.00449 * 355.49890 * 13 11 9 39 39 H 1.08001 * 119.96722 * 0.02562 * 15 14 13 40 40 H 1.08004 * 119.93259 * 180.28005 * 16 15 14 41 41 H 1.08003 * 119.95432 * 179.70034 * 17 16 15 42 42 H 0.97008 * 119.99552 * 179.97438 * 23 22 20 43 43 H 1.08001 * 120.07240 * 179.97438 * 28 18 17 44 44 H 1.08999 * 110.06339 * 241.86984 * 29 8 5 45 45 H 1.08999 * 109.85263 * 120.61030 * 29 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0788 -0.7934 -1.2152 5 6 3.4632 -1.2488 -0.6897 6 1 4.1930 -0.4467 -0.7993 7 6 3.9301 -2.5007 -1.4350 8 7 3.2445 -1.5521 0.7363 9 6 3.9914 -2.3873 1.4853 10 8 4.9370 -2.9647 0.9901 11 6 3.6546 -2.6032 2.9242 12 8 2.7085 -2.0261 3.4192 13 7 4.4013 -3.4388 3.6730 14 6 4.1452 -3.5690 5.0404 15 6 5.1946 -3.7762 5.9284 16 6 4.9425 -3.8993 7.2810 17 6 3.6462 -3.8285 7.7545 18 6 2.5925 -3.6274 6.8718 19 8 1.3195 -3.5575 7.3381 20 6 1.1557 -3.5801 8.6763 21 1 2.0078 -3.7329 9.3221 22 6 -0.1066 -3.4071 9.2233 23 7 -1.1445 -3.2213 8.4365 24 14 -0.3336 -3.4392 11.0771 25 1 0.4758 -2.3575 11.6937 26 1 -1.7674 -3.2326 11.4039 27 1 0.1103 -4.7533 11.6075 28 6 2.8424 -3.4971 5.5132 29 6 2.0760 -0.7893 1.2086 30 1 -0.3634 -1.0275 0.0125 31 1 -0.3634 0.5030 -0.8962 32 1 -0.3633 0.5247 0.8836 33 1 1.4451 -1.6511 -1.4403 34 1 2.1843 -0.1485 -2.0875 35 1 4.0089 -2.2815 -2.4998 36 1 4.9044 -2.8077 -1.0546 37 1 3.2101 -3.3046 -1.2817 38 1 5.1165 -3.9497 3.2627 39 1 6.2084 -3.8361 5.5609 40 1 5.7598 -4.0557 7.9695 41 1 3.4521 -3.9299 8.8120 42 1 -2.0277 -3.1006 8.8191 43 1 2.0248 -3.3412 4.8250 44 1 2.3741 -0.0992 1.9979 45 1 1.3129 -1.4732 1.5801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741098864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:23 Heat of formation + Delta-G solvation = -80.961150 kcal Electronic energy + Delta-G solvation = -28253.916340 eV Core-core repulsion = 24236.689256 eV Total energy + Delta-G solvation = -4017.227084 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.30551 -41.05329 -40.14654 -38.88056 -38.28156 -35.74244 -34.27509 -34.01696 -32.90489 -31.31529 -30.27360 -28.12586 -27.42295 -27.00327 -25.97903 -23.91355 -23.16402 -22.23211 -21.46881 -20.74272 -20.02164 -19.18363 -18.56486 -18.27356 -17.52402 -17.05347 -16.81614 -16.71285 -16.03884 -15.96046 -15.81192 -15.48286 -15.37826 -14.95918 -14.86927 -14.41016 -14.29169 -14.20573 -13.77600 -13.72173 -13.60100 -13.27201 -13.20788 -13.09632 -12.78784 -12.68291 -12.67156 -12.48661 -12.31196 -12.16195 -11.78948 -11.71164 -11.53122 -11.41861 -11.24739 -10.77422 -10.51596 -9.94296 -9.43663 -8.95426 -8.46629 -6.16253 -0.04488 0.58180 0.67649 1.08458 1.35446 1.46886 1.52423 1.97051 2.16072 2.27992 2.79727 3.04677 3.14796 3.43535 3.52611 3.62118 3.81517 4.09820 4.11315 4.25400 4.29995 4.32662 4.35957 4.53465 4.56334 4.61464 4.67087 4.68615 4.78429 4.80257 4.94018 4.97424 5.00487 5.08803 5.09678 5.12195 5.26253 5.29167 5.34474 5.37233 5.46059 5.59376 5.69490 5.91096 6.01965 6.07868 6.12875 6.55999 6.80441 6.96920 7.77635 8.76600 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.002901 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.489488 B = 9650.025095 C =11376.257438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.115 4.115 5 C 0.124 3.876 6 H 0.096 0.904 7 C -0.159 4.159 8 N -0.584 5.584 9 C 0.530 3.470 10 O -0.528 6.528 11 C 0.494 3.506 12 O -0.518 6.518 13 N -0.628 5.628 14 C 0.175 3.825 15 C -0.200 4.200 16 C -0.046 4.046 17 C -0.249 4.249 18 C 0.129 3.871 19 O -0.232 6.232 20 C -0.416 4.416 21 H 0.107 0.893 22 C -0.025 4.025 23 N -0.922 5.922 24 Si 1.022 2.978 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.254 1.254 28 C -0.207 4.207 29 C 0.103 3.897 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.433 0.567 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.127 0.873 42 H 0.272 0.728 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.141 5.036 -18.416 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.121 0.879 4 C -0.152 4.152 5 C 0.023 3.977 6 H 0.114 0.886 7 C -0.217 4.217 8 N -0.318 5.318 9 C 0.312 3.688 10 O -0.406 6.406 11 C 0.276 3.724 12 O -0.392 6.392 13 N -0.276 5.276 14 C 0.081 3.919 15 C -0.220 4.220 16 C -0.065 4.065 17 C -0.269 4.269 18 C 0.078 3.922 19 O -0.138 6.138 20 C -0.491 4.491 21 H 0.125 0.875 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.840 3.160 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.178 1.178 28 C -0.229 4.229 29 C -0.020 4.020 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.273 0.727 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.124 0.876 44 H 0.084 0.916 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.581 5.166 -18.468 21.902 hybrid contribution -0.430 -0.351 0.906 1.062 sum 10.151 4.816 -17.562 20.849 Atomic orbital electron populations 1.21752 0.93077 1.02107 1.02981 1.22294 0.96989 0.99756 0.92716 0.87882 1.23005 0.93289 1.00821 0.98130 1.22406 0.99354 0.98675 0.77249 0.88620 1.22104 1.02222 0.96094 1.01249 1.48580 1.29300 1.41682 1.12234 1.19282 0.83171 0.80610 0.85765 1.90701 1.28690 1.48585 1.72651 1.20668 0.83178 0.80201 0.88308 1.90853 1.27496 1.47569 1.73297 1.42927 1.35915 1.42280 1.06470 1.17310 0.92282 0.99658 0.82663 1.20903 0.98126 1.10614 0.92405 1.21042 0.95389 0.94726 0.95314 1.21391 0.93439 1.11769 1.00269 1.19602 0.85574 0.93709 0.93352 1.83956 1.22719 1.81524 1.25591 1.21879 0.96296 1.51843 0.79128 0.87547 1.26679 0.93573 0.95623 1.06319 1.70215 1.00118 1.47525 1.38147 0.84610 0.78107 0.80046 0.73193 1.18026 1.19779 1.17845 1.20143 0.96730 1.12776 0.93242 1.22465 0.86684 0.94781 0.98023 0.93177 0.89845 0.92825 0.90324 0.86285 0.88867 0.91706 0.93661 0.72658 0.82124 0.81961 0.85485 0.91857 0.87591 0.91623 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.14 71.98 0.66 -1.39 16 2 C -0.10 -1.46 3.54 -9.60 -0.03 -1.49 16 3 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -1.33 5.95 31.99 0.19 -1.14 16 5 C 0.12 2.05 3.77 45.47 0.17 2.22 16 6 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 7 C -0.16 -2.67 8.59 71.98 0.62 -2.05 16 8 N -0.58 -14.09 3.25 -789.08 -2.56 -16.65 16 9 C 0.53 15.20 7.69 87.24 0.67 15.87 16 10 O -0.53 -15.32 14.20 -3.28 -0.05 -15.37 16 11 C 0.49 16.68 7.69 87.24 0.67 17.35 16 12 O -0.52 -21.12 11.56 -3.34 -0.04 -21.16 16 13 N -0.63 -19.55 5.32 -304.88 -1.62 -21.17 16 14 C 0.17 6.49 6.29 38.20 0.24 6.73 16 15 C -0.20 -6.16 9.96 22.43 0.22 -5.94 16 16 C -0.05 -1.52 10.03 22.23 0.22 -1.29 16 17 C -0.25 -10.80 9.17 22.42 0.21 -10.59 16 18 C 0.13 6.75 6.64 22.56 0.15 6.90 16 19 O -0.23 -14.56 9.76 -22.80 -0.22 -14.78 16 20 C -0.42 -24.68 9.49 67.92 0.64 -24.03 16 21 H 0.11 5.68 5.20 -2.91 -0.02 5.66 16 22 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 23 N -0.92 -58.11 13.67 21.61 0.30 -57.82 16 24 Si 1.02 43.27 29.55 68.60 2.03 45.30 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 28 C -0.21 -9.92 8.64 22.52 0.19 -9.73 16 29 C 0.10 2.44 5.10 86.67 0.44 2.88 16 30 H 0.05 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.98 7.96 -2.39 -0.02 0.97 16 34 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.38 6.09 -2.39 -0.01 1.37 16 37 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.43 10.57 8.30 -92.71 -0.77 9.80 16 39 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 40 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.13 5.47 5.63 -2.91 -0.02 5.45 16 42 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 43 H 0.11 5.58 6.23 -2.91 -0.02 5.56 16 44 H 0.07 1.75 7.71 -2.39 -0.02 1.73 16 45 H 0.06 1.72 7.23 -2.39 -0.02 1.71 16 Total: -1.00 -79.31 369.69 3.82 -75.49 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.26 Total: 32.81 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.74 Total: -6.66 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -3.89 Total: -95.64 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -0.31 Total: -51.30 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -79.31 3.82 -75.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741098864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.471 kcal (2) G-P(sol) polarization free energy of solvation -79.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds